BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476935
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77720.1 | Symbols: PPK1 | putative protein kinase 1 | chr1:... 3557 0.0
> AT1G77720.1 | Symbols: PPK1 | putative protein kinase 1 | chr1:29210521-29214087
FORWARD LENGTH=2753
Length=2753
Score = 3557 bits (1926), Expect = 0.0
Identities = 2393/2602 (92%), Gaps = 97/2602 (4%)
Strand=Plus/Plus
Query 1 TGGTTTCTCGTTTCGGAAAATCTACGGTGTAGCAAGTCGGAGATGCAGTTGAGATTTAGC 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 149 TGGTTTCTCGTTTCTGAAAATCTACGGTGTAGTAAGTCGGAGATGCAGTTGAGATTTAGC 208
Query 61 CATGGACAGGGAGGCTAACCTTCCGGTTCAACCGGATAAACCTCCGAAGAGTCTGGTTCG 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AATGGACAGGGAGGATAACCTTCCGGTTCAACCGGATAAACCTCCGAAGAGTCTGGTTCG 268
Query 121 TCCCATCTTAAACCTGGAAACTACTTCGTCTTC-T--T-C-C-TCCTCCT-CGC-CC-GA 171
|||||| |||||||||||||| ||||||||||| | | | | ||||||| | | || ||
Sbjct 269 TCCCATTTTAAACCTGGAAACAACTTCGTCTTCTTCATCCTCTTCCTCCTCCTCACCGGA 328
Query 172 ACTTCTACGGCACTTGCAAGCCGCTTTCAAACGCCATCGCCCACTCAGTAAAATGCAGAC 231
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ACTTCTACGGCATTTGCAAGCCGCTTTCAAACGCCATCGCCCACTCAGTAAAATGCAGAC 388
Query 232 GACCACTATCGGGCCTCGACGGAGTGTTGCTCCACAACGACAAGCTTCAAGAAATACACG 291
||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 389 GACCAGTATCGGGCCTCGACGAAGTGTTGCTCCACAAAGACAAGCTTCAAGAAATACACG 448
Query 292 TTTGGTTACAGCTGAAGGGCAGAGATCTCAGGATGTTGTTACGCTCAGTCAGAGTCTTGC 351
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 449 ATTGGTTACAGCTGAAGGGCAGAGATCTCAGGATGTTGTTACGCTGAGTCAGAGTCTTGC 508
Query 352 TGCTAATACTTTGACACAGGATAC-A--AGCAACTTAGCCA-C--TTCTGTTGCTGGAGA 405
||| |||||||||||||||||||| | | ||||||||||| | |||||||||||||||
Sbjct 509 TGCCAATACTTTGACACAGGATACTACTAACAACTTAGCCATCACTTCTGTTGCTGGAGA 568
Query 406 ATCTATTGAGAATGCGTCAATTACGCCACCTTCAGTTTCAGGAACTGTTAATAATATGTT 465
|||| | | | | || |||||| |||| ||||||||| | | | | | |
Sbjct 569 ATCT---GCG--T-C--CA-TTACGCAACCTACAGTTTCAG-AGC----A-T--T-T--- 607
Query 466 TGGTCAGAATTTCAACCCATCAGACAGACAGATGGATTTTGGAAAATCTGCTGTTGCTAG 525
|| | | | | |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 608 ----CA-A-T--C--C--ATCAGATAGACAGATGGATTTTGGAAAATCTGCTGTTACTAG 655
Query 526 TCTAGGAAGCAATCTTGATATTGGATCTCAGAATGAAAATGACCAGAGAAAGTTCCAATC 585
||||| ||||||||| | | || | | ||||||||||| ||||||
Sbjct 656 TCTAGAAAGCAATCT-G-----G-AT----G--T--------CCAGAGAAAGTCCCAATC 694
Query 586 TCTCATTGGTAGCACCCTCACATCTCAAGATATGGAATGGGATGCAACAAATCAGGCTGA 645
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 695 TCTCATTGG---CAC----A--TCTCAAGATATGGAATGGGATGCAACAAATCAGGCTGA 745
Query 646 AGCATCACATCTTGGTGCTTGTATCGGATCAAAACGTCAGAATCTCCAATCTGTTGATTC 705
|||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 746 AGCATCACATCTTGATGCTTGTATTGGATCAAAACATCAGAATCTCCCATCTGTTGATTC 805
Query 706 TGAGATCAGTTTGAAATCTGAATACAAGGTTTCATCTTCATTGGCAAAGAACCACGGTCA 765
|||| ||||||| |||||||||||||||| |||||||||| ||||||||| ||| |||||
Sbjct 806 TGAGGTCAGTTTAAAATCTGAATACAAGGATTCATCTTCACTGGCAAAGATCCAGGGTCA 865
Query 766 GCTGGGTGAATTTCGCAACTTCTTGAACCAACCTAA-AACTCAGTGTTCTGCTGTGGGGT 824
|||||| ||||||| |||||||||||||||||| || ||||| |||||| ||||||||||
Sbjct 866 GCTGGGAGAATTTCCCAACTTCTTGAACCAACC-AAGAACTCGGTGTTCGGCTGTGGGGT 924
Query 825 CATCATGTGCCACAACTACGCTAATCCATTCGTCTTCAGCTCCTATGCTAAATGCTACTA 884
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 925 CATCATGGGCCACAACTACGCTAATCCATTCATCTTCAGCTCCTATGTTAAATGCTACTA 984
Query 885 CCCACGTTTCTCGTTCTTATGCAGAGGCTGATTCGAGTGCAAATCCCCATGCTGTTCAAA 944
|||| || ||||||||||||| || |||||||||| ||||||||| |||||||||||||
Sbjct 985 CCCATGTCTCTCGTTCTTATGTTGAAGCTGATTCGAATGCAAATCCTCATGCTGTTCAAA 1044
Query 945 GTCAAGGGAACTTGCCTTCTTGTTATCCTTCTTCCAAGGACAGCAACATACTACATACCA 1004
|||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||
Sbjct 1045 GTCAAGGGAACTTGCCTTCTTGTTGTCCGTCTTCCAAGGTCAGCAACATACTACATCCCA 1104
Query 1005 ATAAGGATGCCCCTCCATCAGCGATACCAGCCTCAACTAATGATCCAGAAGTAAGAGTCA 1064
||||||||||| || | || | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1105 ATAAGGATGCCACTGCGTCTGAGATGCCAGCTTCAACTAATGATCCAGAAGTAAGAGTCA 1164
Query 1065 AAGAGAGAGATAAGTCCAAGCAGCAACAG-TGCACCACAGAACTTGAAGCTCCAGTGGGA 1123
|||||| ||||| |||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 1165 AAGAGACAGATACGTCCAAGCAGCAACAGAT-CACCACAGGACTTGAAGCTCCAGTGGGA 1223
Query 1124 TCTTCCAGTCATGGGGGTGACGGACAAGCGAATGCTCGTCTACCTGATGAGTTGCTTACC 1183
||||||| | ||||| | ||||||||||||||||||||||| || || ||||||| ||||
Sbjct 1224 TCTTCCATTTATGGGAGCGACGGACAAGCGAATGCTCGTCTGCCCGAGGAGTTGCATACC 1283
Query 1184 AGTGTTAGCTCACAGCCACAGAAATCAGATAAGCAGGAAAAGGTTGCAAGTAGCAAAGGG 1243
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1284 AGTGTTAGCTCACAGCCACAAAAATCAGATAAGCATGAAAAGGTTGCAAGTAGCAAAGGG 1343
Query 1244 CCATCAGCGCCTCGTAAAAGAAATTATGATCCAGACTTGTTCTTTAAAGTCAATGGGAAG 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CCATCAGCGCCTCGTAAAAGAAATTATGATCCAGACTTGTTCTTTAAAGTCAATGGGAAG 1403
Query 1304 CTTTATCAGAGGCTTGGCAAGATAGGAAGTGGAGGAAGCAGTGAAGTCCACAAGGTTATT 1363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 CTGTATCAGAGGCTTGGCAAGATAGGAAGTGGAGGAAGCAGTGAAGTCCACAAGGTTATT 1463
Query 1364 TCTTCAGATTGTACCATATATGCGCTAAAAAAGATCAAGCTCAAGGGTCGTGACTATGCT 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TCTTCAGATTGTACCATATATGCGCTAAAAAAGATCAAGCTCAAGGGTCGTGACTATGCT 1523
Query 1424 ACAGCATATGGATTTTGCCAGGAAATTGGATATCTAAAGAAGCTGAAAGGGAAAACCAAC 1483
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1524 ACAGCATATGGATTTTGCCAGGAAATTGGATATCTAAAAAAACTGAAAGGGAAAACCAAC 1583
Query 1484 ATCATTCAGCTAATAGACTATGAGGTCACGGATAAGACTTTACTCCAGGAGGTTTTGAAT 1543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 ATCATTCAGCTTATAGACTATGAGGTCACGGATAAGACTTTACTCCAGGAGGTTTTGAAT 1643
Query 1544 GGCACAATGAGTAACAAAGATGGAAGAGTTAAGGACGATGGATTTATATATATGGTACTT 1603
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1644 GGCACAATGAGTAACAAAGATGGAAGAGTTAAGGAAGATGGATTTATATATATGGTACTA 1703
Query 1604 GAATATGGAGAAATCGATCTGGCACACATGTTATCCCAAAAATGGAGGGAAATTGAAGGA 1663
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1704 GAATATGGAGAAATCGATCTGGCTCACATGTTATCCCAAAAATGGAGGGAAATCGAAGGA 1763
Query 1664 TCTGACCGGACAATTGATGAAAATTGGCTTCGGTTCTACTGGCAGCAAATACTTCAAGCT 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 TCTGACCGGACAATTGATGAAAATTGGCTTCGGTTCTACTGGCAGCAAATACTTCAAGCT 1823
Query 1724 GTGAACACCATACATGAGGAGCGCATTGTGCACTCTGATTTGAAACCTGCAAATTTCCTT 1783
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1824 GTGAACACCATACATGAGGAGCGTATTGTGCACTCTGATTTGAAACCTGCAAATTTCCTT 1883
Query 1784 CTTGTTCGAGGCTTTCTAAAACTTATTGATTTTGGAATCGCTAAGGCCATCAATAGCGAT 1843
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1884 CTTGTTCGAGGCTTTCTAAAACTTATTGATTTTGGTATCGCTAAGGCCATCAATAGCGAC 1943
Query 1844 ACTACGAATATTCAACGAGATTCACAGGTGGGGACTTTAAGTTACATGTCACCAGAAGCA 1903
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1944 ACTACAAATATTCAACGAGATTCACAGGTGGGGACTTTGAGTTACATGTCACCAGAAGCA 2003
Query 1904 TTCATGTGTAACGAAAGCGACGAGAATGGAAACACTATAAAATGTGGAAGACCATCAGAT 1963
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2004 TTCATGTGTAACGAAAGCGACGAGAATGGGAACACTATAAAATGTGGAAGACCATCAGAT 2063
Query 1964 ATTTGGTCACTTGGTTGCATACTATACCAAATGGTATATGGAAGAACACCTTTTGCAGAT 2023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 ATTTGGTCACTTGGTTGCATACTATACCAAATGGTATATGGAAGAACACCTTTTGCAGAT 2123
Query 2024 TATAAGACCTTCTGGGCAAAGTTCAAAGTCATAACCGATCCAAACCACGAGATTACTTAC 2083
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2124 TATAAGACCTTCTGGGCAAAGTTCAAAGTCATAACTGATCCAAACCACGAGATTACTTAC 2183
Query 2084 AATCAACTCTCAAACCCGTGGCTTATCGACCTAATGAAGAAATGTCTAGCTTGGGACCGT 2143
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 AATCAACTCTCAAACCCATGGCTTATCGACCTAATGAAGAAATGTCTAGCTTGGGACCGT 2243
Query 2144 AACCAAAGATGGAGAATCCCTGAGCTTCTCCAACATCCTTTCCTTGCTCCGCCCATCCCA 2203
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2244 AACCAAAGATGGAGAATCCCTGAGCTTCTCCAACATCCTTTCCTTGCGCCACCCATCCCA 2303
Query 2204 CCCGAGCCTCAAGTCAAAACCATTAAACTTCT-CAGTCTCATAGCTGAATCTTGTGTTGG 2262
| |||||||||||| |||||||||||| || | ||||||||||||||||||||||| | |
Sbjct 2304 CACGAGCCTCAAGTGAAAACCATTAAA-TTGTTCAGTCTCATAGCTGAATCTTGTGGTAG 2362
Query 2263 TGATGACGATAAAGCCAATTCCATGATCTCTCAGCTTGAACAACTGCTTACAAATCCTGC 2322
||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 2363 TGATGACGATAAAGCAAATTCCATGATTTCTCAGCTTGAGCAACTGCTTTCAAATCCTGC 2422
Query 2323 TCCTCTTCCAAGAAATGATCACTTAGATTCAAGAGATCAAAATCAGCAACTTCTCTTTCG 2382
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2423 TCCTCTTCCAAGAAATGATGTGTTAGATTCAAGAGATCAAAATCAGCAACTTCTCTCTCG 2482
Query 2383 GGTTTCAGAACTTTGTATTCAACTCAAGGATCGGTTATGAGGTCTTGAA--AG----T-A 2435
|||||||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 2483 AGTTTCAGAACTTTGTATTCAACTCCAGGATCGGTTACAAGGTCTTGAAGGAGAAAATTA 2542
Query 2436 --A-GCAGTACTGATCTGATTTTACGGCTTTTGAATCTTGTAAATTGGTATGTTAATTGT 2492
| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2543 GTAAGCAGTGCTGATATGATTCTACGGCTTTTGGATCTTGTAAATTGGTATGTTAATTGT 2602
Query 2493 TAGATT-GGAAAGAA-GACGTTTGCTTATAATGTCCTGTTTGATTTCTTGTTTTGGAATG 2550
|||||| ||||| || ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2603 TAGATTTGGAAA-AACGACGTTTGCTTATAATGTCTTGTTTGATTTCTTGTATTGGAATG 2661
Query 2551 TATCATTTTGGGTGCTCGTCTT 2572
||||||||||||||||||||||
Sbjct 2662 TATCATTTTGGGTGCTCGTCTT 2683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127674869935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5