BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476936
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77730.1 | Symbols: | Pleckstrin homology (PH) domain super... 1133 0.0
> AT1G77730.1 | Symbols: | Pleckstrin homology (PH) domain superfamily
protein | chr1:29214445-29215564 FORWARD LENGTH=798
Length=798
Score = 1133 bits (613), Expect = 0.0
Identities = 726/780 (93%), Gaps = 10/780 (1%)
Strand=Plus/Plus
Query 10 TCTCCACTCGCCGCGAAATCTAACCTAACCACGACTCGATCCGCTTCGTTAAACCTCCCT 69
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||| | ||
Sbjct 7 TCTCCACTCGCCGCAAAATCAAACCTAACCACGACTCGATCGGCTTCGTTAAACATTCCA 66
Query 70 CATTCGACACGTACCAATCACAACCACGATCTCCGGTATAGTCACTCCGCTGGTCCTCGT 129
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 67 CATTCGACACGTACCAATCACAACCACGATCTCCGGTATAGTCTTTCCGCTGGTCCTCGT 126
Query 130 ACAAACGAAGATCGACCACCGTCTGGGAACGGCGTCGCCGGAATCCTCTACAAATGGGTA 189
|| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 127 ACGAACGAAGATCGACCAGCTTCTGGGAACGGCGTCGCCGGAATCCTCTATAAATGGGTA 186
Query 190 AACTACGGCCAAGGATGGAAACGACGGTGGTTCGTTCTCCAGGACGGTGTTTTCTCGTAT 249
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 187 AACTACGGCCAAGGATGGAAACGACGGTGGTTCGTACTCCAGGACGGTGTTTTGTCGTAT 246
Query 250 TATAGAATCCATGGTCCCGATAAAATATCTCTCTCCGTTGAAATGGACCGGAGATCTAAA 309
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 247 TATAGAATCCATGGTCCCGATAAAATATCTCTCTCCGTTGAGATGGATCGGAGATCTAAA 306
Query 310 TTGATCGGCGGCGAATCTTTACGGTTTATTTGCCGACATAGCAAACGCGGTGATGTTCAT 369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTGATCGGCGGCGAATCTTTACGGTTTATTTGCCGACATAGCAAACGCGGTGATGTTCAT 366
Query 370 AGCCCCGGGAAACCTCTCGGCCAAATTCACCTCAAGGTCTCATCGATTGGACAAAGCATA 429
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 367 AGCCCCGGGAAACCTCTCGGCCAAATTCACCTCAAGGTTTCATCGATTGGACAAAGCATA 426
Query 430 TCAGACGGGAAGAGATTTACAGTATTCACTGGCACGAAGAGTCTGCATTTACGCGCAGCA 489
||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 427 TCAGATGGCAAGAGATTCACTGTATTCACGGGCACGAAGAGTCTGCATTTACGAGCAGCA 486
Query 490 ACGAGCGAGGATCGTATCGCTTGGATCGAAGCTTTGAAAGCTGTTAAAGACACGTTTCCT 549
||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 487 ACGAGCGAGGATCGTGCCTCTTGGATCGAAGCATTGAAAGCTGTTAAAGAAACGTTTCCA 546
Query 550 AGAATGTCAAACGAAGAACTAATGGCATCGACGACTAATGTCTCAGTCTCGACCGATAAG 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGAATGTCAAACGAAGAACTAATGGCATCGACGACTAATGTCTCAGTCTCGACCGATAAG 606
Query 610 CTAAGACAGAGATTAATGAAAGAAGAGGTTA-ATGAGACAACCATCAAAGATTGCGAAGA 668
||||| |||||||||||| |||||||||| | ||||||||| ||||||||||||||||||
Sbjct 607 CTAAGGCAGAGATTAATGGAAGAAGAGGT-AGATGAGACAATCATCAAAGATTGCGAAGA 665
Query 669 CATAATGAAGAACAATTTCGTT--CAATTGCATGATGAGGTTATGT-TGCTCAAACAGTA 725
||||||||||||||||||| || || ||||||||||||||||||| | || |||| |||
Sbjct 666 CATAATGAAGAACAATTTC-TTAGCA-TTGCATGATGAGGTTATGTCT-CTAAAACGGTA 722
Query 726 CCAACATCATCTCGTAGATTCTCTCAACAACGTTAATGAGTCAC-T-TAAGACCCACTAA 783
|||| ||||||| ||||||||||||| ||||| | | | |||| | ||||||||| |||
Sbjct 723 CCAATATCATCTTATAGATTCTCTCAAGAACGTCAGTAACTCACCTATAAGACCCAGTAA 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5