BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476938
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77750.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 1024 0.0
> AT1G77750.1 | Symbols: | Ribosomal protein S13/S18 family |
chr1:29230154-29231524 REVERSE LENGTH=691
Length=691
Score = 1024 bits (554), Expect = 0.0
Identities = 648/690 (94%), Gaps = 19/690 (3%)
Strand=Plus/Plus
Query 1 TTCACCGTCAAATCTCTGAAACTGAGCTTCGACGATGTTGGGTTTACGAAGATCTGCGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCACCGTCAAATCTCTGAAACTGAGCTTCGACGATGTTGGGTTTACGAAGATCTGCGAC 60
Query 61 GACCTTGTTCGATATCAGCCAATCTCTGCTTCGTAATGTTACGTTTCATGGCTTACGAGT 120
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GACCTTGTTCGACATCAGCCAGTCTCTGCTTCGTAATGTTACGTTTCATGGGTTACGAGT 120
Query 121 CCAAGGAATTCGTGTGGGGAACGCAGAGGTTCCAAACAATATGCCACTCAAAACCGGTCT 180
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CCAAGGAATTCGTGTGGGAAACGCAGAGGTTCCAAACAATAAGCCACTCAAAACCGGTCT 180
Query 181 TCAAGCAGTTTATGGGATTGGCCGCCGTAAGTCTCACCAGGTTCTCTGTCATCTTGGAAT 240
||||| ||||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 TCAAGAAGTTTATGGAATCGGCCGCCGTAAATCTCACCAGGTTCTCTGTCACCTTGGAAT 240
Query 241 CACTAACAAACTTGCCAGAGACTTAACTGGAAAAGAACTCATTGACCTCCGTGAAGAAGT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CACTAACAAACTTGCCAGAGACTTAACTGGAAAAGAACTCATTGATCTCCGTGAAGAAGT 300
Query 301 TGGCCAGCACCAGCATGGTGATGAATTGAGGAGGCGTGTTGGATCAGAAATACAGAGACT 360
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 301 TGGCCAGCACCAGCATGGTGATGAACTGAGGAGGCGTGTTGGATCGGAAATACAGAGACT 360
Query 361 GGTCGAAGTAGACTGCTACAGAGGTAGTAGACATAGACATGGAATGCCTTGCAGAGGACA 420
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GGTCGAAGTAGATTGCTACAGAGGTAGTAGACATAGACATGGATTGCCTTGCAGAGGACA 420
Query 421 AAGAACCAAAACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCAGGAAAGAA 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAACCAGTACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCAGGAAAGAA 480
Query 481 GAAAGCTCCTCGCAAGTAAACCTGTCTTTCAATCTATTTTCTGGGATTCATAAGTTGTAA 540
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 481 GAAAGCCCCTCGCAAGTAAACCTGTCTTTCTATCTATTCTCTGGGATTCATAAGTTGTAA 540
Query 541 TCCATGTCTCATTGTTTACAGACATGGCTTTGTGTTACTTTTGGGATGAAACTGATCAAA 600
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TCCATGTCTTATTGTTTACAGACATGGCTTTGTGTTATTTTTGGGATGAAACTGATCAAA 600
Query 601 TAAGTAAAA---G-T----C---t-tttttt-GTCATTGTCATTGCCATTGC-A--G--G 642
||||||||| | | | | |||||| ||||||| |||||||||||| | | |
Sbjct 601 TAAGTAAAACATGATTTGTCCAGTCTTTTTTTGTCATTGCCATTGCCATTGCCATTGCAG 660
Query 643 -GGAAGAAGAATGCTTCAAAACTGTTCTGC 671
|||||||||||||||||||||||||||||
Sbjct 661 AGGAAGAAGAATGCTTCAAAACTGTTCTGC 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5