BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476940

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77765.4 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   743    0.0  
  AT1G77770.1 | Symbols:  | Protein of unknown function (DUF1644)...   220    1e-56


> AT1G77765.4 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29245050-29246237 
FORWARD LENGTH=837
Length=837

 Score =  743 bits (402),  Expect = 0.0
 Identities = 447/468 (96%), Gaps = 6/468 (1%)
 Strand=Plus/Plus

Query  1    ATTATCAAAGAAATGCAAATGGGATATGAAAATCCAAGGATTATGTACGGTGTGATCATC  60
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  20   ATTATCAAAGAAATGCAAATGGGATATGAAAATCCAAGGACTATGTACGGTGTGATCATC  79

Query  61   ACCGTGTACGTTGATCGTCAAACGACGACCGTCCGATCATTTCAAGGGAGACGGAAAAAT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  80   ACCGTGTACGTTGATCGTCAAACGACGACCGTCCGATCATTTCAAGGGAGACAGAAGAAT  139

Query  121  GATGAAGGGGAGAGATTCATTGAACGGACGTGGAAGCCTGGGATCGGAAAGATACGTGGT  180
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  140  GATGAAGGGGAGAGATTCATTGAACGGACGTGGAAGCGTGGGATCGGAAAGATACGCGGT  199

Query  181  TATGATCGGAGAGCGAATCTGTTAGCTTATATTCGTCAGATGAGGGCCGAGAGTCTCACC  240
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  200  TATGATCGGAGAGCGAATCTGTTAGCTTATATTCGTCAGAAGAGGGCCGAGAGTCTCACC  259

Query  241  GGAGATTCGAAATGCGACGTCGTAGAGAGTGACAACAAGCCTGAACGGCTGAGTCCGAGT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  GGAGATTCGAAATGCGACGTCGTAGAGAGTGACAACAAGCCTGAACGGCTGAGTCCGAGT  319

Query  301  CCGAAGAAGAA-AA--GAAGGTGGATAAGAAAAATGATGAGTAAGTTCCGGTTACCGTTT  357
            ||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  320  CCGAAGAAGAAGAAAAGAAGGTGGATAAGAAGAATGATGAGTAAGTTCCGGTTACCGTTT  379

Query  358  CTTCGTCCATTTCGACGAAAAAATAGAACGTGGAGATACCGCCATTTTGTTCCAGATGAA  417
            ||||| |||||||| || ||||||||||||||||||||| | ||||||| ||||||||||
Sbjct  380  CTTCGGCCATTTCGCCGGAAAAATAGAACGTGGAGATACAGACATTTTGATCCAGATGAA  439

Query  418  GAAGGAG-A-A-GCAAGGAGCAAAGCTAAACACAACTCAGATCTTTGG  462
            |||| || | | |||||||||||||||||||||||||||||| |||||
Sbjct  440  GAAGAAGGAGATGCAAGGAGCAAAGCTAAACACAACTCAGATATTTGG  487


 Score =  331 bits (179),  Expect = 5e-90
 Identities = 247/278 (89%), Gaps = 11/278 (4%)
 Strand=Plus/Plus

Query  462  GAATAAGCTTAAACATATGGTTGGAGGATTATCACGCGGTTGCGTACGAAGTAGAAGAGA  521
            ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  565  GAATAAGCTAAAACATATGGTTGGAGGATTATCACGCGGCTGCGGACGAAGTAGAAGAGA  624

Query  522  TTCTTGATGGAC-ACAACAAGAATCAAGGAA-CGGATTATTGTCTGAAGTTGGCTAAGAA  579
            ||| ||||| || | ||||||||||||| || | || | ||||||||| || | |   ||
Sbjct  625  TTCGTGATGAACTA-AACAAGAATCAAGAAATC-GAATGTTGTCTGAATTTCG-T--TAA  679

Query  580  GAAGTGAGAAAtttttttttttctatt-tttt-ttttCACATAACCTTTTTATTGGTCTT  637
            |||||||||||    ||||||||| || |||| |||||||||||||||||||||| ||||
Sbjct  680  GAAGTGAGAAA-AGCTTTTTTTCTTTTCTTTTCTTTTCACATAACCTTTTTATTGTTCTT  738

Query  638  CCAGAACTTGAGGAAGATGAAGATCAAATCAATACAGAGaaaaaaaaG-GGAAATAAAAG  696
            |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct  739  CCAGAACTTGAGGAAGATGAAGATCATATCAATACAGAGGAAAAAAAGTGGAAATAAAAG  798

Query  697  AGAAATTTTGAAATGAGGCATAAGAGATCATGCCTCAT  734
            ||||||| ||||||||||||||||||||||| ||||||
Sbjct  799  AGAAATTATGAAATGAGGCATAAGAGATCATTCCTCAT  836


> AT1G77770.1 | Symbols:  | Protein of unknown function (DUF1644) 
| chr1:29246074-29248022 REVERSE LENGTH=1216
Length=1216

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 147/160 (92%), Gaps = 4/160 (3%)
 Strand=Plus/Minus

Query  578   AAGAAGTGAGAAAtttttttttttctatt-tttt-ttttCACATAACCTTTTTATTGGTC  635
             |||||||||||||    ||||||||| || |||| |||||||||||||||||||||| ||
Sbjct  1212  AAGAAGTGAGAAA-AGCTTTTTTTCTTTTCTTTTCTTTTCACATAACCTTTTTATTGTTC  1154

Query  636   TTCCAGAACTTGAGGAAGATGAAGATCAAATCAATACAGAGaaaaaaaaG-GGAAATAAA  694
             |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||
Sbjct  1153  TTCCAGAACTTGAGGAAGATGAAGATCATATCAATACAGAGGAAAAAAAGTGGAAATAAA  1094

Query  695   AGAGAAATTTTGAAATGAGGCATAAGAGATCATGCCTCAT  734
             ||||||||| ||||||||||||||||||||||| ||||||
Sbjct  1093  AGAGAAATTATGAAATGAGGCATAAGAGATCATTCCTCAT  1054



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35616010223


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5