BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476943
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77770.1 | Symbols: | Protein of unknown function (DUF1644)... 1461 0.0
> AT1G77770.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:29246074-29248022 REVERSE LENGTH=1216
Length=1216
Score = 1461 bits (791), Expect = 0.0
Identities = 868/905 (96%), Gaps = 6/905 (1%)
Strand=Plus/Plus
Query 1 TAGAAGCAATCTCGCtttttttCCCTTTTTATCTGTACATCATCATCCTTCAAGCTCGGA 60
||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 TAGAAGCAATCTCAC--TTTTTCCC--TTTCTCTGTACATCATCATCCTTCAAGCTCGGA 56
Query 61 GCTCTCTCTTCCCGCCGGCGATCTCCTCCGCTTCTTTCCGATTTTTAA-TCGATCGAATG 119
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 57 GCTCTCTCTTCCCGCCGGCGATCTCCTCCGCTTCTCTCCGA-TTTTAAGTCGATCGAATG 115
Query 120 GGGAAAATCAAGAAAGCGAATCAAAGGGGTCACATTGCTACACCTTATCCATCACCATGT 179
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 116 GGGAAAATCAAGAAAGTGAATCAAAGGGGTCATATTGCTACACCGTATCCATCACCATGT 175
Query 180 TGCAAGAAAGAATGGGCTGGCTCAACCTGCCCAGTATGCTTGGAGTCTCCACACAATGCG 239
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 TGTAAGAAAGAATGGGCTGGCTCAACCTGTCCAGTATGCTTGGAGTCTCCACACAATGCG 235
Query 240 GTTCTTCTCCTGTGTTCATCTTATCACAAAGGATGTCGTCCTTACATGTGTGCAACAAGC 299
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 236 GTTCTTCTCCTGTGTTCGTCTTATCACAAAGGATGCCGTCCTTACATGTGTGCTACAAGC 295
Query 300 AGCCGTTTTGCCAACTGCCTCGAGCAATACAGGAAATCATACAGTAACGAGAACTCAGGA 359
|||||||||||||||||||| || |||||||||||||| ||| ||||||| |||||||||
Sbjct 296 AGCCGTTTTGCCAACTGCCTTGATCAATACAGGAAATCCTACGGTAACGAAAACTCAGGA 355
Query 360 CAACCCGAGCTCTTGTGTCCACTGTGTAGAGGTCAAGTGAAAGGTTGGACTGTTGTGAAA 419
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 356 CAACCCGAGCTTTTGTGTCCACTGTGTAGAGGTCAAGTGAAAGGCTGGACTGTTGTGAAA 415
Query 420 GATGCTCGGATGCATTTTAACTCCAAGAGAAGGACTTGTATGCAGGATAACTGTTCCTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GATGCTCGGATGCATTTTAACTCCAAGAGAAGGACTTGTATGCAGGATAACTGTTCCTTT 475
Query 480 GTAGGAAACTTCCGAAAGCTCAAGAAACACATGAAGGAAAACCACCCACATGCTTGCCCG 539
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 476 TTAGGAAATTTCCGAAAGCTCAAGAAACACATGAAGGAAAAACACCCACATGCTTGCCCA 535
Query 540 AGAGCCATTGATCCAGCTCTGGAAACCAAATGGAAGAGGCTTGAGAGGGAAAGAGACAGA 599
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 536 AGAGCCATTGATCCAGCTTTAGAAACTAAATGGAAGAGGCTTGAGAGGGAAAGAGACAGA 595
Query 600 AGAGACGTGATAAGCACGATAATGTCATCGACACCAGGTGCTGTTGTGTTGGGAGATTAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGAGACGTGATAAGCACGATAATGTCATCGACACCAGGTGCTGTTGTGTTGGGAGATTAT 655
Query 660 GTGATAGAGCCACATAACCGAGCTGTTTATGATGAAGAAGACGAAGAAGAAGATTACAGC 719
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGATAGAGCCGCATAACCGAGGTGTTTATGATGAAGAAGACGAAGAAGAAGATTACAGC 715
Query 720 TCAGATGACTCTCTGAGCAACGGGATATTGGATCTAGAATCATCATGGCAAGGACAAAGC 779
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 TCAGATGACTCTCTAAGCAACGGGATACTGGATCTAGAATCATCATGGCAAGGACAAAGC 775
Query 780 CATCATATTCGGTTTCTCGATATGGAATCAAGTGATTTCGCATCCTCTTCCAGCTCCCCT 839
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 CATCATATTCGGTTTCTTGATATGGAATCAAGTGACTTCGCATCCTCTTCCAGCTCCCCT 835
Query 840 GCTTCTCCAAGCCGTTCGCTTCACCGTTTGCTCTTTCCAAGGAACCAGAGAGGCGGCAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCTTCTCCAAGCCGTTCGCTTCACCGTTTGCTCTTTCCAAGGAACCAGAGAGGCGGCAAT 895
Query 900 AGAGG 904
|||||
Sbjct 896 AGAGG 900
Score = 300 bits (162), Expect = 2e-80
Identities = 178/185 (96%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1001 AGGAGCAGTATAAAAAGGCTAACATGACTAGCCAATTAGCCATACACAGGGAATT-Gaaa 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 AGGAGCAGTATAAAAAGGCTAACATGACTAGCCAATTAGCCATACACAGGGAATTGGAAA 957
Query 1060 aaaaaaaCTCGCAGTCGTCCCTTTCTTTTATTTATTTTCATGTAAATTAT-GTATTCTGT 1118
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 AAAAAAACTCGCAGTCGTCCCTTTCTTTTATTTATTTTCATGTAAATTATTGTATTCTGT 1017
Query 1119 GTAATTGTAGTATTGTTTCCGCATTGTTGTACTCTA-TGAGGCATGATCTCTTATGCCTC 1177
||||||||| ||||||||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 1018 GTAATTGTATTATTGTTTCTGCATTGTTGTACTTTAATGAGGAATGATCTCTTATGCCTC 1077
Query 1178 ATTTC 1182
|||||
Sbjct 1078 ATTTC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5