BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476947
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77810.1 | Symbols: | Galactosyltransferase family protein ... 2154 0.0
AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family prot... 789 0.0
AT1G77800.1 | Symbols: | PHD finger family protein | chr1:2925... 95.3 2e-18
> AT1G77810.1 | Symbols: | Galactosyltransferase family protein
| chr1:29260562-29263113 REVERSE LENGTH=1631
Length=1631
Score = 2154 bits (1166), Expect = 0.0
Identities = 1509/1661 (91%), Gaps = 78/1661 (5%)
Strand=Plus/Plus
Query 4 AAATGTTGTTGATTGTGTTGTGtctctctctctctccctttaaatctggacatcttctga 63
||||||| |||||||||||||| ||||| | || |||||||||||||||||| |||| |
Sbjct 20 AAATGTTCTTGATTGTGTTGTG--TCTCT-T-TC-CCCTTTAAATCTGGACATGTTCTAA 74
Query 64 tct--cactctc--tcttccttcaacatctcCACCACGATGAAGCACAAAGTCTCCAAAA 119
||| ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 75 TCTCACACTCTCTTTCTTCTTTGAACCTCTCCACCACGATGAAGCACAAAGTCTCCAAAC 134
Query 120 GAGTAATATCTCTGAAATGGGTTCCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GAGTAATATCTCTGAAATGGGTTCCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAA 194
Query 180 TCTTCACCTCCAGGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TCTTCACCTCCAGGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGC 254
Query 240 -TCCGTCGTGATCATGAACTTCAGATTGTATCAGACGATTGTTCTCATAATAAAAAAGCT 298
| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 255 AT-CATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAAAAAGCT 313
Query 299 ACTCAAGAAAAAGATGTAATTGACCAAGTTTTGACAACTCACGAAGCAATACAGGGTGAC 358
|| |||||||||||||||| || | ||||||||| |||||| ||||| ||||||| ||||
Sbjct 314 ACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAGGATGAC 373
Query 359 AGGTCGTTGGATAAGTCGGTTTCTACGCTTGAAATGCAGTTGGCCTCTACAAAGACCTCT 418
||||||||||||||||| |||||||| ||| | | | ||||||| || ||||
Sbjct 374 AGGTCGTTGGATAAGTCAGTTTCTACACTT----T-C---T----TCTACAAGGAGCTCT 421
Query 419 CAAGATGGCTCGGAAACAACCAACTCTTTAACGGGAGAAACCCCGAGGAAGAAAGTGTTT 478
||||| | | || | ||| || | ||| |||||||||||||||||||
Sbjct 422 CAAGA--GAT-GG--TTGA-TGGCTC-GGAA----ACAAA-CCCGAGGAAGAAAGTGTTT 469
Query 479 ATGGTAATGGGAATCAATACCGCATTTAGCAGTAGAAAACGGCGTGATTCAGTTAGAGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATGGTAATGGGAATCAATACCGCATTTAGCAGTAGAAAACGGCGTGATTCAGTTAGAGAA 529
Query 539 ACCTGGATGCCTCAAGGGGAGAAGCTTGAAAAACTAGAACAAGACAAGGGAATTGTCATC 598
|| |||||||||||||| ||||||||||||| ||| ||||| || ||||| ||||| |||
Sbjct 530 ACATGGATGCCTCAAGGTGAGAAGCTTGAAAGACTGGAACAGGAGAAGGGGATTGTGATC 589
Query 599 AAGTTCATGATTGGACACAGTGCGACGTCAAATAGTATATTGGATAGAGCTATTGATTCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AAGTTCATGATTGGACACAGTGCGACGTCAAATAGTATATTGGATAGAGCTATTGATTCA 649
Query 659 GAAGATGCTCAACACAAAGACTTCCTTAGGCTGGAGCATGTTGAAGGATATCACGAACTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GAAGATGCTCAACACAAAGACTTCCTTAGGCTGGAGCATGTTGAAGGATATCACGAACTC 709
Query 719 TCAGCAAAAACCAAGATATTCTTTTCCACTGCATTAGCAAAATGGGATGCAGAGTTCTAT 778
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 710 TCAGCAAAAACCAAGATATTCTTTTCCACTGCAGTAGCCAAATGGGATGCAGAGTTCTAT 769
Query 779 ATCAAGGTCGATGATGATGTACACGTCAATCTCGGTATGCTGGCTTCCACACTTGCCCGT 838
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 770 ATCAAGGTAGATGATGATGTTCACGTCAATCTCGGTATGCTTGCTTCCACACTTGCCCGT 829
Query 839 CACCGCTCAAAGCCGAGGGTCTATATTGGGTGTATGAAATCAGGGCCTGTTCTTGCTCA- 897
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 830 CACCGCTCAAAGCCGAGGGTTTATATTGGTTGTATGAAGTCAGGGCCTGTTCTTGCTCAG 889
Query 898 AA---A--GA-C------AG-----TAAAGTACCATGAACCTGAGTATTGGAAATTTGGA 940
|| | || | || |||||||||||||||||||||||||||||||||||
Sbjct 890 AATTTATTGAACTGTTTCAGGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGA 949
Query 941 GAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCGAAGGAT 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 GAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT 1009
Query 1001 CTTGCCAAATACATATCCATCAACCAGCCAATTTTGCATAAGTATGCAAATGAAGATGTG 1060
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1010 CTTGCTAATTACATATCCATCAACCAGCCAATTTTGCATAAGTATGCCAATGAAGATGTG 1069
Query 1061 TCTTTGGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTTTGT 1120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1070 TCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGT 1129
Query 1121 TGTGGGACTCCTCCAGATTGTAGATGGAAGGCAGAGGCGGGCGATGTGTGTGTGGCCTCA 1180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1130 TGTGGGACTCCTCCAGATTGTAGATGGAAGGCAGAGGCGGGCGATGTTTGTGTGGCCTCA 1189
Query 1181 TTCGAATGGAGCTGTAGTGGGATTTGCAAGTCGGTAGAGAGAATGAAGATAGTGCATGAA 1240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1190 TTCGAATGGAGCTGTAGTGGGATTTGCAAGTCCGTAGAGAGAATGAAGATAGTGCATGAA 1249
Query 1241 GTATGTAGTGAAGGAGAAGGAGCAGTTTGGAATACACTTCTCTAAAAGAT-ATTTCAGTT 1299
|| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 1250 GTTTGTAGTGAAGGAGAAGGAGCTGTTTGGAATACGCTTCTGTAAAAGATCATTTCAGTT 1309
Query 1300 CCCAATCAGCTAAGTGGAGCCAATACTAAACATACACTCATAACTTTGATAGAC-GTCTA 1358
|||||||||| |||||| ||||||||||||||| ||| | | ||||||| | |||
Sbjct 1310 CCCAATCAGCCAAGTGGTTCCAATACTAAACATA-ACT--T---T--GATAGACTG-CTA 1360
Query 1359 TAAGAAAGGGAAAGAGGGAGCAAGAGAGGAGATGGCAAATTTTGTAAAGAAGAACCAAAG 1418
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1361 CAAGAAAGGGAAAGAGAGAGCAAGAGAGGAGAAGGCAAATTTTGTAAAGAAGAACCAAAG 1420
Query 1419 GTATACAAATCACATACTTGAGAATATATT-GCTTAGTTGTTGTTAAAACAGAGTGATTG 1477
|||||||||||| ||||||||||||||||| |||||||||||||| | |||||||
Sbjct 1421 GTATACAAATCATATACTTGAGAATATATTTGCTTAGTTGTTGTT------GTGTGATTG 1474
Query 1478 GCTTTGTTGTTTCTTCTACTTGAGTTAGATCATGTTAGTGTAATCTTCGaaaaaaaGCCA 1537
||||||||||||||||||||||||||||||||||||||| ||||||| || |||| | ||
Sbjct 1475 GCTTTGTTGTTTCTTCTACTTGAGTTAGATCATGTTAGTATAATCTTGGACAAAAGGGCA 1534
Query 1538 AATGAGCTAAAAA-TGCATAACTAAAGAATTTTCAGACAACCACTATTATTATTCCCTTG 1596
||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1535 AATGAGCTAAAAAATGCATAACTAAAGAATTTTCAGACAAC---TATTATT---CCCTTG 1588
Query 1597 GTCAGATTTTAGACACAATTGATGAATATTTACACTTATGC 1637
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1589 GTCAGATTTTAGACACAATTGATGAATATATACACTTATGC 1629
> AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family protein
| chr1:7751002-7753519 REVERSE LENGTH=1514
Length=1514
Score = 789 bits (427), Expect = 0.0
Identities = 943/1183 (80%), Gaps = 72/1183 (6%)
Strand=Plus/Plus
Query 105 ACAAAGTCTCCAAAAGAGTAATATCTCTGAAATGGGTTCCAT-TTCTCTGCATCTCTTTC 163
||||||||||||| ||| | || || ||| ||||||||| | |||| ||||| |||| |
Sbjct 108 ACAAAGTCTCCAAGAGACT--TA-CTATGACATGGGTTCC-TCTTCTTTGCATTTCTTGC 163
Query 164 -TTCGCTCTCGGAGCAATCTTCACCTCCAGGTCATG-GGAGCCGTCGTCAGATTCCGGAA 221
|| | |||||||||||||||||||||| | | | || | ||||| |||||||| |
Sbjct 164 TTTTTC-CTCGGAGCAATCTTCACCTCCAAATTACGATCAG-CTTCGTCGGATTCCGGTA 221
Query 222 GTCAGCTAATTTCACAGCTCCGTCGTGATCATGAACTTCAGATTG-TATCAGACGATTGT 280
| ||||| |||| ||||| ||| |||||||| || ||| |||||| || | | |||| |
Sbjct 222 GCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTTAAGATTGTTA-CCCAAGATTAT 280
Query 281 TCTCATAATAAAAAAGCTA-CTCAAGAAAAAGATGTAATTGACCAAGTTTTGACAACTCA 339
||||| | |||||| | | ||||| || |||||||| || | ||||| | ||||||
Sbjct 281 GCTCATGA-GAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTCA 339
Query 340 CGAAGCAATACAGGGTGACAGGTCGTTGGATAAGTCGGTTTCTACGCTTGA-AATGCAGT 398
||||||| | || | || ||||||||||| ||||||| |||| | || ||||
Sbjct 340 TAAAGCAAT-C-----GA-A--TCATTGGATAAGTCAGTTTCTATGCTTCAGAA-GCAGC 389
Query 399 TGGC-CT-CTACA-A-AGACCTCTC-A-AGA-TG-G---CTCGGAAACAACCAACTCTTT 447
| | || ||||| | || || ||| | ||| || | || | ||||||| ||||
Sbjct 390 T--CTCTGCTACACATAG-CC-CTCAACAGATTGTGAATGTC-TCAGCAACCAATTCTTC 444
Query 448 AACGGGA-GAAACCCCGAGGAAGAAAGTGTTTATGGTAATGGGAATCAATACCGCATTTA 506
||| | | |||| || | ||| ||||| |||||||| || || |||||||| |||||||
Sbjct 445 AACAGAAGGAAA-CCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTA 503
Query 507 GCAGTAGAAAACGGCGTGATTCAG-TTAGAGAAACCTGGATGCCTCAAGGGGAGAAGCTT 565
||||| ||||||| || ||||| | ||||||| || ||||||||||||||||| ||||||
Sbjct 504 GCAGTCGAAAACGTCGCGATTC-GCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTT 562
Query 566 GAAAAACTAGAACAAGACAAGGGAATTGTCATCAAGTTCATGATTGGACACAGTGCGACG 625
|| ||| | ||| |||| |||||||||||| |||| || ||||||||||||||| | |||
Sbjct 563 GAGAAATTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAACG 622
Query 626 TCAAATAGTATATTGGAT-A-GAGCTATTGATTCAGAAGATGCTCAACACAAAGACTTCC 683
|||| ||||| |||||| | ||| ||||||||||||||||||||| |||| || |||
Sbjct 623 CCAAACAGTATGTTGGATAAGGAG--ATTGATTCAGAAGATGCTCAATACAACGATTTCT 680
Query 684 TTAGGCTGGAGCATGTTGAAGGATATCACGAA-CTCTCAGCAAAAACCAAGATATTCTTT 742
|||||||||| ||||| ||||||||| || || || || ||||||||||| | |||||
Sbjct 681 TTAGGCTGGATCATGTCGAAGGATATTAC-AATCTATCTGCAAAAACCAAAAGCTTCTTC 739
Query 743 TCCACTGCA-TTAGCAAAATGGGATGCAGAGTTCTATATCAAGGTCGATGATGATGTACA 801
|| | |||| || ||||| |||||||| ||||| ||| ||||| | ||||||||||| ||
Sbjct 740 TCTAGTGCAGTT-GCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCA 798
Query 802 CGTCAATCTCGGTATGCTGGCTTCCACACTT-GCCCGTCACCGCTCAAAGCCGAGGGTCT 860
||||||||| || | ||| ||||||||| || || ||||||| || ||||| |||||||
Sbjct 799 CGTCAATCTTGGCACGCTTGCTTCCACA-TTAGCAAGTCACCGTTCTAAGCCAAGGGTCT 857
Query 861 ATATTGGGTGTATGAAATCAGGGCCTGTTCTTGCTC-AAAAGACAGTAAAGTACCATGAA 919
| ||||| ||||||||||| || ||||| ||| | | ||||||| | ||||||| ||||
Sbjct 858 ACATTGGATGTATGAAATCCGGTCCTGTCCTTAC-CAAAAAGACGGCCAAGTACCGTGAA 916
Query 920 CCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTT-CGACATGCTACAGGACA 978
|| |||| ||||||||||||||| || ||||||||||| ||| ||||||||||| |||||
Sbjct 917 CCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATA-TTTCCGACATGCTACGGGACA 975
Query 979 GATCTATGCCATCTCGAAGGATCTTGCCAAATACATATCCATCAACCAGCCAATTTTGCA 1038
||| |||||||| || ||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 976 GATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGCA 1035
Query 1039 TAAGTATGCAAATGAAGATGTGTCTTTGGGGTCATGGTTTATCGGTCTTGAGGTTGAACA 1098
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||
Sbjct 1036 TAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCA 1095
Query 1099 TATTGATGACCGCAACTTT-TGTTGTGGGACTCCTCCAGATTGT-AGATGGAAGGCAGAG 1156
|| ||||| || || ||| |||||||| ||||||||||| ||| | ||| | |||||||
Sbjct 1096 AATCGATGATCGTAA-TTTCTGTTGTGGTACTCCTCCAGACTGTGAAATG-AGGGCAGAG 1153
Query 1157 GCGGGCGATGTGTGTGTGGCCT-CATTCGAATGGA-GCTGTAGTGGGATT-TGCA-AGTC 1212
|| ||||| |||||||||| | |||| || |||| | |||||||| | | |||| | ||
Sbjct 1154 GCTGGCGAAATGTGTGTGGC-TACATTTGACTGGAAG-TGTAGTGG-AGTATGCAGA-TC 1209
Query 1213 GGTAGAGAGAATGAAGATAGTGCATGA-AGTATGTAGTGAAGG 1254
|| || |||||| ||| || |||| | | ||| |||||||
Sbjct 1210 AGTCGATAGAATGTGGATGGTTCATGTGA-TGTGTGGTGAAGG 1251
> AT1G77800.1 | Symbols: | PHD finger family protein | chr1:29253396-29260617
FORWARD LENGTH=4959
Length=4959
Score = 95.3 bits (51), Expect = 2e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 1584 TATTATTCCCTTGGTCAGATTTTAGACACAATTGATGAATATTTACACTTATGC 1637
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4959 TATTATTCCCTTGGTCAGATTTTAGACACAATTGATGAATATATACACTTATGC 4906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5