BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476949
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77840.1 | Symbols: | Translation initiation factor IF2/IF5... 2237 0.0
> AT1G77840.1 | Symbols: | Translation initiation factor IF2/IF5
| chr1:29268487-29270586 FORWARD LENGTH=1788
Length=1788
Score = 2237 bits (1211), Expect = 0.0
Identities = 1441/1550 (93%), Gaps = 24/1550 (2%)
Strand=Plus/Plus
Query 12 ACGAATCGAATTTTGAAGCTTTCTTTTATGTCTGACAAGATATCTCCGTTTTGTTGTCAA 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 ACGAATCGAATTTTGAAGCTTTCTTTTATGTCTGACAAGATATCTCCGTTTTGTTGTCAA 157
Query 72 TCTGGTTGCTTGGTAAACACTA-TCCTACATCCAGAATTAAGGACTACTACTAGTTCCTC 130
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 158 TCTGGTTGCTTGGAAAACAC-AGTCCTACATCCAGAATTAAGGACTACTACTAGTTCCTC 216
Query 131 CATCACTTTAGGTTCTCGCATCTTCAAACCGGAGATCCTTCCTATTTCTGTCCAGTTTTT 190
|||||||||||| ||||||||||||||||||||||||| |||| ||||| |||| |||||
Sbjct 217 CATCACTTTAGGGTCTCGCATCTTCAAACCGGAGATCCCTCCTCTTTCTCTCCACTTTTT 276
Query 191 GAGCTAAGAAGAATGGCGCTGCAGAACATTGGTGCTTCCAACCGTAACGATGCCTTCTAC 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TAGCTAAGAAGAATGGCGCTGCAGAACATTGGTGCTTCCAACCGTAACGATGCCTTCTAC 336
Query 251 AGGTACAAGATGCCTAAGATGGTTACCAAGACTGAAGGCAAAGGTAATGGCATTAAGACC 310
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 337 AGGTACAAGATGCCTAAGATGGTTACCAAAACCGAAGGCAAAGGTAATGGCATTAAGACC 396
Query 311 AACATTATCAATAATGTTGAGATTGCCAAAGCCTTGGCGAGACCTCCTTCTTATACCACA 370
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 397 AACATTATCAACAATGTTGAGATTGCCAAAGCCTTGGCTAGACCGCCTTCTTATACGACC 456
Query 371 AAGTACTTTGGTTGCGAGCTTGGGGCGCAGTCTAAATTTGACGAGAAGACTGGGACTTCG 430
|||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 457 AAGTACTTTGGTTGTGAGCTTGGAGCGCAGTCTAAGTTTGATGAGAAGACTGGGACGTCG 516
Query 431 CTTGTGAATGGGGCTCACAACACGTCTAAGCTTGCTGGGCTTTTGGAGAATTTCATTAAG 490
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 517 CTTGTGAATGGAGCTCACAACACGTCTAAGCTTGCTGGGCTTTTGGAGAATTTTATTAAG 576
Query 491 AAGTATGTCCAGTGCTATGGATGTGGTAACCCGGAGACTGAGATCATTATCACAAAGACG 550
|||| ||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 577 AAGTTTGTTCAGTGTTATGGATGTGGTAACCCGGAGACTGAGATTATTATTACGAAGACG 636
Query 551 CAGATGGTGAATCTCAAGTGTGCTGCTTGCGGGTTTATCTCTGAGGTTGACATGAGGGAC 610
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 637 CAGATGGTGAATCTCAAGTGTGCTGCTTGTGGGTTTATCTCTGAGGTCGACATGAGGGAT 696
Query 611 AAGTTGACTAATTTCATTCTCAAGAACCCACCTGAGCAGAAGAAGGTGTCAAAGGACAAG 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 697 AAGTTGACTAATTTCATTCTCAAGAACCCACCTGAGCAGAAGAAGGTGTCAAAGGATAAG 756
Query 671 AAAGCAATGAGAAAAGCTGAGAAGGAGAGGCTTAAAGAAGGCGAGCTGGCTGATGAGGAG 730
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 AAAGCAATGAGGAAAGCTGAGAAGGAGAGGCTTAAAGAAGGCGAGCTAGCTGATGAGGAG 816
Query 731 CAGAGAAAGCTCAAGAAGGAAGCTAAGAAGAAAGCATTGTCTAACGGGAAGGATGCTTCG 790
||||||||||| ||| | |||||||||||||||||||||||||| |||||| | |
Sbjct 817 CAGAGAAAGCT---GAA--A-GCTAAGAAGAAAGCATTGTCTAACGGCAAGGAT--T-C- 866
Query 791 TCTAAGACTTCCAAGAACCATTCTTCTGATGAGGATATAAGCCCAAAGCATGATGAGAAT 850
| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 867 T--AAGACGTCTAAGAACCATTCTTCTGATGAGGATATAAGCCCGAAGCATGATGAGAAT 924
Query 851 GCAC-AGGATGTGGATGAGGATGAAGACGATGATGATGGTGTCCAGTGGCAAACTGATAC 909
|| | || | ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 925 GCTCTAG-AGGTGGATGAGGATGAAGATGATGATGATGGTGTCGAGTGGCAAACTGATAC 983
Query 910 TTCCCGAGAAGCTGCTGAGAAAAGAATGAAAGAACAGTTGAGTCCTGTAACTGTCGAAAT 969
||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||
Sbjct 984 TTCCCGAGAAGCTGCTGAGAAAAGAATGATGGAACAGTTGAGTGCTAAAACTGCCGAAAT 1043
Query 970 GGTGATGCTCTCTACAGTGGAAGCAGAAGAGAAAAAGGCGCCCAAAAGCAAACCGAATGG 1029
||||||||||||| || |||||| |||||||||||||||||||||||||||| | || ||
Sbjct 1044 GGTGATGCTCTCTGCAATGGAAGTAGAAGAGAAAAAGGCGCCCAAAAGCAAATCTAACGG 1103
Query 1030 GGATGTTGTGAAAACTGAGA-TAC-C-TCCGCAAGAGAAGAATCTCGTGCAGGATATGAA 1086
| | |||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1104 GAACGTTGTGAAAACTGAGAATCCTCCTCCGCAAGAGAAGAATCTCGTGCAGGATATGAA 1163
Query 1087 AGAGTATCTGAAGAAAGGGTCACCAATAAGCGAGTTCAAGAGTTTCATCTCCTCTCTCTC 1146
|||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||
Sbjct 1164 AGAGTATCTGAAGAAAGGGTCACCAATAAGCGCGCTCAAAAGTTTCATCTCGTCTCTCTC 1223
Query 1147 TGATCCTCCACAAGACATCATAGACGCACTCTTCAATGCTCTCTTTGACGGCGTGGGCAA 1206
||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 1224 TGAACCTCCTCAAGACATCATGGACGCACTCTTCAATGCTCTCTTTGATGGTGTGGG-AA 1282
Query 1207 AGG-ATTCTCCAAAGAAGTGA-TGAAGAAGAAGAACTACTTAGCGGCTGCTGCAACAACG 1264
||| |||| |||||||||||| | ||||||||||| |||||||||||||||||||||| |
Sbjct 1283 AGGGATTCGCCAAAGAAGTGACT-AAGAAGAAGAATTACTTAGCGGCTGCTGCAACAATG 1341
Query 1265 CAAGAGGATAGATCACAGATGCATCTGCTCAATTCGATCGGGACATTCTGTGGAAAGAAT 1324
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1342 CAAGAGGATGGATCACAGATGCATCTGCTCAATTCGATTGGGACATTCTGTGGAAAGAAT 1401
Query 1325 GGAAACGAAGAAGCGTTGAAAGAGGTGGCTCTGGTTCTCAAAGCATTGTACGACCAAGAC 1384
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1402 GGAAACGAAGAAGCTTTGAAAGAGGTGGCTCTGGTTCTTAAAGCATTGTACGACCAAGAC 1461
Query 1385 ATCATTGAGGAAGAGTTTGTGTTGGATTGGTATGAAAAGGGTCTCACCGGAGTTGACAAA 1444
||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1462 ATCATTGAGGAAGAGGTAGTGTTGGATTGGTACGAAAAGGGTCTCACCGGAGCTGACAAA 1521
Query 1445 AGCTCCCCGGTTTGGAAGAATGTTAAGCCTTTTGTGGAGTGGCTCCAGAGCGCTGAGTCA 1504
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1522 AGCTCGCCGGTTTGGAAGAATGTTAAGCCTTTTGTGGAGTGGCTTCAGAGCGCTGAGTCT 1581
Query 1505 GAGTCCGAAGAGGAAGATTGAGACAtttttttctttcctctttactgttt 1554
|||||||||||||| ||||||| || ||||||||| |||| | ||| |||
Sbjct 1582 GAGTCCGAAGAGGAGGATTGAGTCACTTTTTTCTTCCCTCCTAACT-TTT 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5