BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476952
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77870.1 | Symbols: MUB5 | membrane-anchored ubiquitin-fold ... 880 0.0
> AT1G77870.1 | Symbols: MUB5 | membrane-anchored ubiquitin-fold
protein 5 precursor | chr1:29285078-29285889 FORWARD LENGTH=637
Length=637
Score = 880 bits (476), Expect = 0.0
Identities = 578/624 (93%), Gaps = 20/624 (3%)
Strand=Plus/Plus
Query 1 GCTCTGCTCAAAGACAACGGAtctctcttcttcttcttctttctAGAGACTTTTTGAGCT 60
||||||||||||||||||||| |||||| ||| |||||||||||||||| | ||
Sbjct 26 GCTCTGCTCAAAGACAACGGAACTCTCTGCTT-TTCTTCTTTCTAGAGA-----T---CT 76
Query 61 ATTCTTGTGGAAATAATTTAAAGATATGGGAGATGAAGATTGGATAGAATTGAAGTTCAG 120
|||||| || |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 77 TTTCTTGAGGTAATAATTTAAAG--ATGGGAGATGAAGATTTAATAGAATTGAAGTTCAG 134
Query 121 ACTCGCAGATGGCACTGACATTGGTCCAAGCAAATATAGTCAACTCATGACTGTTGCATC 180
|||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 135 ACTCGCAGATGGTACCGACATTGGTCCAAGCAAATATAGTCAATTCATGACTGTTGCATC 194
Query 181 TCTTAAAGAGAAAATCATTGCACAATGGCCTAAAGACAAAGAAAACGCACCAAAGTTGAT 240
||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 195 TCTCAAGGAGAAAATCATTGCTCAATGGCCTAAAGACAAAGAAAACGCACCAAAGATGAT 254
Query 241 AAATGAGGTTAAGCTCATCAATGGTGGGAAGATACTGGAGAACAACACAACACTTTCTGA 300
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 255 AAATGAGGTTAAGCTCATCAATGGTGGGAAGATACTTGAGAACAACAAAACACTTTCTGA 314
Query 301 AGCAAGGT-C--ATTACCTATTTGTGAACTTCCTGGAATTGTAACTACAATGCATGTTGT 357
|||||||| | | || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 315 AGCAAGGTCCTTAATAACTATTGGTGAACTTCCTGGAATTGTAACTACAATGCATGTTGT 374
Query 358 TCTTCGTCCTCCTCTCTTTGAGAAGAAAAAAGAGAAACTGCAGAATGATCCTCCAATGAA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 375 TCTTCGTCCTCCTCTCTTTGAGAAGAAAAAAGAGAAACTGCAGAATGATCCTCCAAGGAA 434
Query 418 GAGTCACTGTGTATGCTGCATTTTGTAGCTCCACTTAGAGATTTTTGATCCTTT-TACAT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 435 GAGTCACTGTGTATGCTGCATTTTGTAGCTCCACTTAGAGATTTTTGATCCTTTATACA- 493
Query 477 AATTTATTCCATTGGAAAAAACTTTACATAGCTTCAAGTCTTCAACATGGATCTTCATTA 536
| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 494 A-TTTATTCCATTGGAAAAAACTTTCCATATCTTAAAGTCTTCAACATGGATCTTCATTA 552
Query 537 CCAGAATGAATTTGGttttttctt--ttctttttcttcttcATTGTTTATCAAAAATGGC 594
||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 553 CCAGAATGATTTTGGTTTTT-CTTCCTTCCTTTTCTTCTTCATTGTTTATCAAAAATGGC 611
Query 595 TTGAGAAAAATTACTGTGTTGTTG 618
|| |||||||||||||||||||||
Sbjct 612 TTAAGAAAAATTACTGTGTTGTTG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5