BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476953
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77885.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 913 0.0
> AT1G77885.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22065.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:29289873-29290915 FORWARD LENGTH=1043
Length=1043
Score = 913 bits (494), Expect = 0.0
Identities = 626/684 (92%), Gaps = 32/684 (5%)
Strand=Plus/Plus
Query 218 GGTGGCAAACAAAGCCACTAAATTCAGTAAAATGGAACCCACGAAATTTATCTATAAATA 277
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 GGTGGCAAACAAACCCACTAAATTCAGTAAAATGGAACCCACCAAATTTATCTATAAATA 368
Query 278 AGTCCCCAAACCTCTCCCCCAAAAATGCAACAACACTCATCTTTCTTTCCCAATATAAGT 337
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 369 AGTCCCCAAACCTCTCCCCCAAAAATGCAACAACACTCA----TCTTTCCCAATATAAG- 423
Query 338 TTTTATTACCTAACAGCAAC-----TTTTG--TTT-CTCAAAACATAATTTTGTCTTATT 389
||| ||||| |||| |||| ||||| ||| ||||||||||||||||||||||||
Sbjct 424 -TTT-TTACCAAACAACAACTTTTGTTTTGCCTTTCCTCAAAACATAATTTTGTCTTATT 481
Query 390 TCCTAAATTGGTAAAAGATGTCGCTAGCTATCGCAGAAGTTTACACGGTGAGGAAGTTTC 449
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTCTAAACCGGTAAAAGATGTCGCTAGCTATCGCAGAAGTTTACACGGTGAGGAAGTTTC 541
Query 450 ACAGAGAGAGTATGAAGAAACCGGCCAAACCGACGGTTACCGGCGAGGGAGATGAAAAGA 509
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 542 ACAGAGAGAGTATGAAGAAACCGGCCAAACAGACGGTTACCGGCGAGGGAGATGAAAAGA 601
Query 510 CTGCCGGAGGAAGTTTCAAGGAGGCGCCGGTGAAATCTGGTGG-TAGTAGAAGATTCGGA 568
|| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||
Sbjct 602 TTGGCGGAGGAAGTTTCAAGGAGGCGCCGGTGAAGTCAGGTGGGT-GTAGAAGATTCGGA 660
Query 569 CGGTGGTTTGTTGGAAAGCCGGGAATGAAGAAAAGCTCTGCTAAAGTTTCGGATCCCATG 628
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGTGGTTTTTTGGGAAGCCGGGAATGAAGAAAAGCTCTGCTAAAGTTTCGGATCCCATG 720
Query 629 GCGATTGAGTGATAAAGAAGAAACAAAAACTAttctcttctttgc-tttttttcttt-ct 686
||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| ||| ||
Sbjct 721 GCGATTGAGTGATGAAGAAGAAATTAAAACTTTTCTCTTCTTTGCCTTTTTTTTTTTTCT 780
Query 687 ttctttattttgttttttttttcattggtctttttt-a-tggctttttctagtgtcttct 744
|||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||
Sbjct 781 TTCTTTATTTTGTTTTATTTT-CATTGGTCTTTTTTTAATGGCTTTTTCTAGTGTCTTCT 839
Query 745 ctttttctttattggatgattttATAAATAGTCGGTAACCGTTGTAGAATATGAACTTCA 804
||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||| ||
Sbjct 840 CTTTTTCTTTATTGGGTGATTTTATAAATAGTCGGTAAACATTGTACAATATGAACTACA 899
Query 805 AAATATATGAGAAA-TCTATATATGTATGTAGAGTGGATGTATATATAAATTCCCTAAAT 863
||| |||||||||| |||||||||||||||||| ||||||||| | ||||||||
Sbjct 900 AAA-ATATGAGAAAATCTATATATGTATGTAGAATGGATGTAT-T-------CCCTAAAT 950
Query 864 ACCACAGCTAGTTTGATAAGTTTT 887
||||||||||||||||||||||||
Sbjct 951 ACCACAGCTAGTTTGATAAGTTTT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5