BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476957
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77930.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1495 0.0
> AT1G77930.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:29301000-29302639 FORWARD LENGTH=1172
Length=1172
Score = 1495 bits (809), Expect = 0.0
Identities = 996/1081 (92%), Gaps = 33/1081 (3%)
Strand=Plus/Plus
Query 72 AAGA-GTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTGCGAAATTGATCGGTTT 130
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 105 AAGAGGTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTACGAAATTGATCGGTTT 164
Query 131 CTGGGTCGGAGCTTGAAGTTATGAGCAATCTTCGAGCTATTTGTAGACCACACACTGTTT 190
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| || |||| |
Sbjct 165 CTGGGTTGGAACTTGAAGTTATGAGCAATCTTCGAGCTATCTGTAGACCATACTCTGTGT 224
Query 191 TCTCTTCGGTCGTGTGTTGTAGTAGACACCAAAGTCGATCACTTTTTAGGGTTTCGATTA 250
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 225 TCTCTTCGATTGTGTGTTGTAGTAGACATCAAAGTCGATCACTTTTTAGGGTTTCGATTA 284
Query 251 AAAACCTCGCCTTTAGAAACC-GAGTATCGAATTCGTCTTGGTTTAGGTCTAAAGAAGAT 309
||||| ||||||||||||||| |||| |||||||||||||||||||||||| || || ||
Sbjct 285 AAAACGTCGCCTTTAGAAACCAGAGT-TCGAATTCGTCTTGGTTTAGGTCT-AA-AA-AT 340
Query 310 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 400
Query 370 GAAGAGAAATCTCCGTACGAGACTCTTGAGTTGGATCGAGATGCAGAGGAAGAGCAGATT 429
||||||||||||| ||||| ||||| ||||||||| || ||||||||||||| ||||||
Sbjct 401 CAAGAGAAATCTCCTTACGATACTCTCGAGTTGGATAGAAATGCAGAGGAAGAACAGATT 460
Query 430 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 520
Query 490 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATCAAGATTCAGGCGGCATACGAG 549
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 521 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATTAAGATTCAGGCTGCATACGAG 580
Query 550 CTGCTCATGGACTCAGAAAAGAAAAG-ACAATATGATATGGATAACCGAGTGAATCCGAT 608
|||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 581 CTGCTCATGGACTCGGAAAAGAAA-GTACAATATGATATGGATAACCGAGTTAATCCGAT 639
Query 609 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGAAAAGCGTTTGATCAGAG 668
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 640 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGTAAAGCTTTTGATCAAAG 699
Query 669 AGGCGACATGGCTATTGCAGCTTGGGCTGAGCAACAACAGCTTGAGATAAACCTTCGTGC 728
||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 700 GGGCGACATGGCGGTTGCCGCTTGGGCTGAGCAACAACAGCTTGATATAAACCTGCGTGC 759
Query 729 TCGTCGCCTTTCACGTTCTAAGGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 788
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 760 TCGTCGTCTTTCTCGTTCTAAAGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 819
Query 789 GAAGAAAGCATCAAGAGAGTTATTTAACAGCACTTTAAAGAGACACACACTAGTGTTGAA 848
|||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 820 GAAGAAAGCATCGAGAGAGTTATTCAACAGCACTTTAAAGCGACACACGCTAGTGTTGAA 879
Query 849 GAAAAGAGATCTAATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 908
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAAAGAGATCTGATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 939
Query 909 ATTAGCAGCAGAAGGTCTCGAGCTTGATTCTGAAGAAGAAGAGGAAGAAGCAGCCAAGTA 968
|||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 940 ATTAGCAGCAGAAGGTCTCGAGCTTGATACCGAAGCAGAAGAGGAAGAAGCAGCAAAGTA 999
Query 969 AGAGCCCAAACGTTTTGGAAGCGTCATCTTCGATATCTACTTCAAGTAATTAAGCACTTG 1028
||| |||||| |||||||||| | ||| ||| ||||||||||||||||||||| ||
Sbjct 1000 AGATTCCAAACATTTTGGAAGC-T--TCT---ATAGCTACTTCAAGTAATTAAGCACATG 1053
Query 1029 GTACTTACTCCctctctctctctttctctTGTAGTATAAACATACATGTA-A-A-T-AT- 1083
|||||| |||||||||| ||||| || | |||||||||||||||||||| | | | ||
Sbjct 1054 GTACTTGCTCCCTCTCTGTCTCT--CT-T-GTAGTATAAACATACATGTAGATAATCATA 1109
Query 1084 T---AC------CA-GATCTTCACTTCACGGTTCATCATTAAAAATAAGACAAGTACCAA 1133
| || || |||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1110 TTTGACAATTTACAAGATCTTCACTGCACGGTTCATTATTAAAAATAAGACAAGTACCAA 1169
Query 1134 T 1134
|
Sbjct 1170 T 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5