BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476958
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77940.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 833 0.0
> AT1G77940.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr1:29303897-29305382 REVERSE LENGTH=652
Length=652
Score = 833 bits (451), Expect = 0.0
Identities = 556/605 (92%), Gaps = 13/605 (2%)
Strand=Plus/Plus
Query 1 CGAAGCGGCGCTTTTTCGTTTTAGGTCATCGTGCTCCTCTTCTCCTCCGCCGCACAGATC 60
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1 CGAAGCGGCGCTTTTTCGGTTT-GGTCATCGTGCTCCTCTTCTCCTCCACCGCACAGATC 59
Query 61 CAAGACATTTTGACTCCACTTCATCGCCGGCGAAAATGGTGACGGCCAAGAAAACGAAGA 120
||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 60 CAAGACATTTTGATTACACTCCATCGCCGGCGAAAATGGTGACGGAAAAGAAAACGAAGA 119
Query 121 AGTCTCATGAGGGTATCAACAGTAGGTTGGCTCTTGTAATGAAGAGTGGTAAATACACTC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 AGTCTCATGAGGGTATCAACAGTAGGTTGGCTCTTGTTATGAAGAGTGGTAAATACACTC 179
Query 181 TTGGTTACAAGTCTGTTCTCAAATCCCTTCGTGGCTCCAAAGGGAAGCTGATTCTAATCT 240
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 180 TTGGTTACAAGTCTGTTCTCAAATCCCTCCGTGGCTCCAAAGGGAAACTGATTCTAATCT 239
Query 241 CCACCAATTGCCCACCCTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGCTAAAG 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCACCAATTGCCCACCGTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGCTAAAG 299
Query 301 TTGGTGTCCACCATTATAATGGAAATAACGTTGATTTGGGAACAGCTTGTGGGAAGTACT 360
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 300 TTGGTGTCCACCATTACAATGGAAATAACGTTGATTTGGGAACAGCTTGCGGAAAGTACT 359
Query 361 TCCGTGTTTCGTGTCTGAGCATTGTTGATCCTGGTGATTCTGACATTATCAAGTCAATCC 420
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TCCGTGTTTCTTGTCTGAGCATTGTTGATCCTGGTGATTCTGACATTATCAAGTCAATTC 419
Query 421 CTGGCGATCAGTGATTCAATTTTCAGATTTTCTTTCTTCCCGGACTTCT-ATCCATTTTT 479
|||| || ||||||| ||||||||||||||| ||| ||||| ||||| | | || | |||
Sbjct 420 CTGGTGACCAGTGATACAATTTTCAGATTTTATTT-TTCCCAGACTTTTTACCCGTCTTT 478
Query 480 GTATTTGAGCCTCTCTAAATTTTATGAGCAATAGACAATGTGTTTCTTCTTGGTCAAATT 539
||||| ||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 479 GTATTCGAGTCTCTCAAAATTTTATGAGCAATAGACATTGTGTTTCTTCTTTGTCAAGTT 538
Query 540 TTCTTATAT-G-G-A----AAA-GAA-TT-CTATAAAAGCTGCAAACAACTCAAGTTTAC 589
||||||||| | | | ||| ||| || || ||||||| || ||||| |||||||||
Sbjct 539 TTCTTATATTGAGGACCGGAAAAGAAATTTCTTTAAAAGCAGCTTACAACACAAGTTTAC 598
Query 590 GCATT 594
|||||
Sbjct 599 GCATT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5