BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476959
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77950.1 | Symbols: AGL67 | AGAMOUS-like 67 | chr1:29306957-... 1201 0.0
> AT1G77950.1 | Symbols: AGL67 | AGAMOUS-like 67 | chr1:29306957-29309863
FORWARD LENGTH=1027
Length=1027
Score = 1201 bits (650), Expect = 0.0
Identities = 763/818 (93%), Gaps = 5/818 (1%)
Strand=Plus/Plus
Query 1 AATAATAGAGTGCGTTTTGATTA-TTTGCAGCGATCATTGGACATGGGTCGGGTGAAATT 59
||||||||| || |||||||||| ||||||| || ||| ||| ||||||||||| |||||
Sbjct 30 AATAATAGATTGTGTTTTGATTATTTTGCAGTGACCATCGGATATGGGTCGGGTTAAATT 89
Query 60 GGAGTTAAAGCGGATAGAGAAGAACACGAACCGACAAATTACGTTCTCAAAACGTAAAAA 119
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 90 GGAGTTAAAGCGTATAGAGAAGAGCACGAACCGACAAATTACGTTCTCAAAACGTAAAAA 149
Query 120 AGGTTTAATaaaaaaaGCGTATGAATTGTCAACACTTTGTGATATCGATCTTGCCCTCCT 179
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 150 AGGTTTAATAAAAAAGGCTTATGAATTGTCAACACTTTGTGACATCGATCTTGCCCTCCT 209
Query 180 CATGTTCTCTCCTTCCGATCGACTATGTCTCTTTTCCGGTCAAACAAGGATCGAGGACGT 239
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAAACAAGGATCGAGGACGT 269
Query 240 TTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAACGCCATAGTTTTTCCTGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 270 TTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAACGCCATAGTTTTCCCTGA 329
Query 300 TCAGAGCAAACGCCAAGCTATCCAAAACAAAGAGTATTTGTTAAGAACTCTGGAAAAACT 359
||||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 330 TCAGAGCAAGCGCCAAGGTATCCAAAACAAAGAGTATTTGTTAAGGACTTTGGAAAAACT 389
Query 360 CAAAATTGAAGATGACATGGCTCTCCAAATCAACGAACCTCGCCCTGAAGCTATCAA-TA 418
||||||||| |||||||||||||||||||||||||||||||| || ||||| | ||| |
Sbjct 390 CAAAATTGAGGATGACATGGCTCTCCAAATCAACGAACCTCGTCCAGAAGCCACCAACT- 448
Query 419 CCGATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAGCAGCTTCAGATATCAG 478
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 449 CCAATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAACAGCTTCAGATATCAG 508
Query 479 AGGAAGAACTAAGGAAATTCGAACCAGATCCAATGAGGTTTACATCAATGGAGGAGATTG 538
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 509 AGGAAGAACTCAGGAAATTCGAACCAGATCCAATGAGGCTAACATCAATGGAGGAGATTG 568
Query 539 AAGCATGTGAAACTCATCTCATCAATACATTGACAAGTGTCGTACAGAGAAGGGAACATT 598
||||||||||| || | ||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 569 AAGCATGTGAAGCTAACCTCATCAATACGTTGACACGTGTCGTCCAGAGAAGGGAACATT 628
Query 599 TGTTGAGGAAGTCCTGCGAAGCACCAAGTAACCAACAAAGCATGCAGGGGATCCTTCTAA 658
||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 629 TGTTGAGAAAGTCCTGCGAAGCACAAAGTAACCAACAAAGCATGGACGGGATCCTTCTAA 688
Query 659 ATGACATCGTCGAGGATTGGGGGTCTGAGGCTGAGCCCAAACAAGCCCATGTGATGGCTA 718
|||||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||
Sbjct 689 ATGACATCGTCGAGGATTGGGGACCTGAGCCCGAGCCCAAACAAGCCCATATGATAGCTA 748
Query 719 AGTCGGCCCATCAGTCAAATCAGCTAAGCTATGATTTGCTCTTACA-AGGGAGTAATTCG 777
| ||||||||||| |||||||||| |||||||||||| ||||||| ||| |||||||||
Sbjct 749 ATTCGGCCCATCATTCAAATCAGCCAAGCTATGATTTACTCTTACGCAGG-AGTAATTCG 807
Query 778 AGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 815
||||||||||||||||||||||||||||||||||||||
Sbjct 808 AGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5