BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476961
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-... 1733 0.0
AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387... 599 2e-170
> AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-29317067
REVERSE LENGTH=1370
Length=1370
Score = 1733 bits (938), Expect = 0.0
Identities = 1223/1349 (91%), Gaps = 65/1349 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCGAGTGAAATTGGAGATAAAACGAATAGAAAACACAACGAATCGACAAGTTACG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGAGTGAAATTGGAGATAAAACGAATAGAAAACACAACGAATCGACAAGTTACA 60
Query 61 TTCTCAAAAAGACGTAATGGTCTGATAAAGAAAGCTTATGAATTGTCCATTCTTTGTGAC 120
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCCAAAAGACGAAATGGTCTTATAAAGAAAGCTTATGAATTGTCCATTCTTTGTGAC 120
Query 121 ATCGACATTGCTCTCCTCATGTTCTCTCCCTCCGATCGCCTTAGCCTTTTTTCCGGCAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 121 ATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGGCAAA 180
Query 181 ACAAGGATCGAAGACGTTTTCTCAAGATACATCAATCTTTCTGATCAAGAACGAGAGAAT 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGATTGAAGACGTTTTCTCTAGATACATCAATCTTTCTGATCAAGAACGAGAGAAT 240
Query 241 GCTCTAGTATTCCCCGATCAAAGCCGACGCCCAGATTTCCAGAGCAAAGAGTATCTACTC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCTAGTATTCCCCGATCAAAGTCGACGCCCAGATTTCCAGAGCAAAGAGTATCTACTC 300
Query 301 CGGACTTTGCAGCAACTCAAGACTGAGAATGATATTGCTCTTCAACTTACAAACCCTACA 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 301 CGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCAACCCTACA 360
Query 361 GCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAACAGCTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAACAACTT 420
Query 421 CACATGGCAGAGGAAGAACTAAGAAAATACGAACCAGATCCAATCAGGTTTACAACAATG 480
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTACAACAATG 480
Query 481 GAAGAGTACGAAACTTGTGAGAAGCAGCTAATGGATACCTTAACACGTGTCAATCAACGA 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GAAGAGTACGAAACTTGTGAGAAGCAGCTCATGGACACCTTAACACGTGTCAATCAACGA 540
Query 541 CGGGAACATATGTTGAGTCATGATCACTTATCTTCATACGAAGCATCTGCTATACAACAA 600
||||||||||| |||||||| || || ||||||||||| |||||||||||| ||||||||
Sbjct 541 CGGGAACATATATTGAGTCAAGACCAATTATCTTCATATGAAGCATCTGCTTTACAACAA 600
Query 601 CAGCAAAACATGGGTGGACCTTTTGTAAACGACGTCGTTGGGGGATGGCTGACTGAAAAT 660
||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 601 CAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGGCTGACTGAAAAT 660
Query 661 GGGCCTAACCAAGCCCATTTATTCGACGCATCAGCCCATTCAGCAATGTATGAAACGTTG 720
||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 661 GGGCCTAACGAAGCCCATTTATTCGACGCATCGGCACATTCAGCAATGTATGAAACTTTA 720
Query 721 TTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATGGGTGAATCCAATGTGTCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATGGGTGAATCCAATGTGTCA 780
Query 781 AATCATAACGGTGACATGTTCCAAGAATGGGCCCAGGCATATAATTCTACTACGGCCCAT 840
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 781 AATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTATAATTCTACTACGGCCCAT 840
Query 841 AATCCGACAACCCTATTTCCTCCTATGCAGCATCAGCACGGA-T--TGGTTGATCCCAAT 897
|| || | || |||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 841 AACCCTTCGACTCTATTTCCTCCTATGCAGCATCAGCATGGACTGGTGGTTGATCCCAAT 900
Query 898 ATGGAAGAAATTGAAATCCCGGTTATGAAGAAGGAGGCACAAGCAGACCAGGAGGTCTCC 957
|| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 901 ATAGAAGAAATTGAAATACCGGTTATGAAGAAGGATGCACAAGCAGACCACGAGGTCTCC 960
Query 958 GACTATGATATAAGAATGCCTCAGCTCAGTAGCCAATAATCTCAAGGaatttcaatttta 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GACTATGATATAAGAATGCCTCAGCTCAGTAGCCAATAATCTCAAGGAATTTCAATTTTA 1020
Query 1018 cc-t-tatcata-a-a-aatttatacgtttttt-----ac-----a-a----t-a----t 1052
|| | ||| || | | |||||||||||||||| | | | | | |
Sbjct 1021 CCATATATTATTGACATAATTTATACGTTTTTTCTTTTATTTTTTAGAAAAGTTAACAAT 1080
Query 1053 -t-tatacggttttatttatttatgat-a-a-gatattactatacat-t-t--atataAA 1103
| ||||||||||||||||| ||||| | | |||||||||||| || | | |||||||
Sbjct 1081 ATATATACGGTTTTATTTATCTATGAAGACAAGATATTACTATATATATGTTTATATAAA 1140
Query 1104 ACACAATTTCCACCCTTAAG-GCCTTAA----TTAACCTTTTATTGACTTGCATATTGTA 1158
|||||| |||||| |||||| | |||| ||||||||||||||||||| ||||||||
Sbjct 1141 ACACAACTTCCACACTTAAGAG--TTAAGACCTTAACCTTTTATTGACTTGTATATTGTA 1198
Query 1159 CATAACGTTTCTATTaaaaaaaaaaaCCATTTTTACTCTTAAACAATGTATATT-T-TAT 1216
|||||||||||||||| |||||||| | ||||| ||| ||||||||||||||| | |||
Sbjct 1199 CATAACGTTTCTATTATAAAAAAAA-C-ATTTT-ACTGTTAAACAATGTATATACTATAT 1255
Query 1217 -TTATGAAAAATAAATAAATGGAAAACCATGTTTTGCTCTCAA----G-AT-T-AT---G 1265
||||| | | |||| | ||| ||||| ||||||||||||||| | || | || |
Sbjct 1256 ATTATGTATA-TAAA-ACATGAAAAAC-ATGTTTTGCTCTCAAATATGCATATGATTATG 1312
Query 1266 TCAATTTTGCTTGTCTTAATTTTTT-AAA 1293
|||||||||||||||| |||||||| |||
Sbjct 1313 TCAATTTTGCTTGTCT-AATTTTTTTAAA 1340
> AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814264
REVERSE LENGTH=1013
Length=1013
Score = 599 bits (324), Expect = 2e-170
Identities = 689/857 (80%), Gaps = 58/857 (7%)
Strand=Plus/Plus
Query 1 ATGGGTCGAGTGAAATTGGAGAT-AAAACGAATAGAAAACACAACGAATCGACAAGTTAC 59
|||||||| |||||||| || || || | ||||||| |||||||||||||||||||||||
Sbjct 6 ATGGGTCGGGTGAAATTAGAAATCAAGA-GAATAGAGAACACAACGAATCGACAAGTTAC 64
Query 60 GTTCTCAAAAAG-ACGTAATGGTCTGATAAAGAAAGCTTATGAATTGTCCATTCTTTGTG 118
||| |||||| | | | |||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 65 GTTTTCAAAACGTA-GAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTG 123
Query 119 ACATCGACATTGCTCTCCTCATGTTCTCTCCCTCCGATCGCCTTAGCCTTTTTTCCGGCA 178
| |||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 124 ATATCGACATTGCTCTTATCATGTTCTCTCCTTCTGATCGCCTTAGCCTTTTCTCCGGAA 183
Query 179 AAACAAGGATCGAAGACGTTTTCTCAAGATACATCAATCTTTCTGATCAAGAACGAGAGA 238
|||| |||| ||||||||||| ||||||| |||||||||| || | |||||||||||||
Sbjct 184 AAACTCGGATTGAAGACGTTTTTTCAAGATTCATCAATCTTCCTAAACAAGAACGAGAGA 243
Query 239 ATGCTCTAGTA-TTCCCCGATCA-AAGCCGACGCCCAGAT-TTCCAGAGCAAAGAGTATC 295
||||||| || || || || || || ||||||||||| || || | |||||||| ||
Sbjct 244 GTGCTCTA-TACTTTCCTGACCAGAA-TAGACGCCCAGATATT-CAAAACAAAGAGTGTC 300
Query 296 TACTCCGGACTT-TGCAGCAACTCAAGACTGAGAATGATATTGCTCTTCAACTTACAAAC 354
|||| ||| || ||||||||||||||||||| ||||| || ||||||||| | || |||
Sbjct 301 TACTAAGGA-TTCTGCAGCAACTCAAGACTGAAAATGACATCGCTCTTCAAGTCACGAAC 359
Query 355 CCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAA 414
||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 360 CCTGCAGCTATCAACTCTGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAA 419
Query 415 CAGCTTCACATGGCAGAGGAAGAACTAAGAAAATACGAACCAGATCCAATCAGGTTTACA 474
|| || || |||||||| ||||||||||| | ||||||||| |||||||| || || ||
Sbjct 420 CAACTCCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAATAAGATTCACG 479
Query 475 ACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCTAATGGATACCT-TAACACGTGTCAA 533
|| ||||| || |||||| || ||||||||| || | || | || |||||| |||
Sbjct 480 ACCATGGAGGAATACGAAGTTTCTGAGAAGCAACTTCTCGACA-CTCTAACACATGT-TG 537
Query 534 T-CAACGACGGGAACATATGTTGAGTCATGATCACTTATCTTCATACGAAGCATCTGCTA 592
| ||||| || || ||| | |||| || | || |||||||| || ||||||||| |||
Sbjct 538 TCCAACGGCGAGACCATCTCATGAG-CA--ACCATTTATCTTCGTATGAAGCATCTACTA 594
Query 593 TACAACAACAGCAAAACATGGGTGGACCTTTTGTAAACGACGTCGTTGGGGGATGGCTGA 652
| |||| | |||||| ||||| ||||||||||| |||||||||| || ||||| |
Sbjct 595 T---GCAAC--C-AAACATTGGTGGTCCTTTTGTAAATGACGTCGTTGAAGGTTGGCT-A 647
Query 653 -CTGAAAATGGG-CCTAACCAAGCCCA----TTT-AT---TCGACGCA-TC--AGC--C- 696
||||||||||| || || ||| |||| ||| || ||| | || || | | |
Sbjct 648 CCTGAAAATGGGACC-AATCAAACCCATTTGTTTGATGCATCGGCCCATTCTAACCAACT 706
Query 697 C-----A-T-TCA---GCAATGTATGAAACGTTGTTGCAAGGAAGTAGCTCAAGCTCGAA 746
| | | ||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 707 CAGAGAATTATCATCGGCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAA 766
Query 747 CCAAAACAACATTATGGGTGAAT-CCAATGTGTCAAATCATAACGGTGACATGTTCCAAG 805
|||||||||||| | | ||||| ||| ||| | || || || ||||| ||||||| |
Sbjct 767 CCAAAACAACATGA-G--TGAATGCCAC-GTGACGAACCACAATGGTGAAATGTTCCCTG 822
Query 806 AATGGGCCCAGGCATAT 822
| ||||| ||||| |||
Sbjct 823 AGTGGGCTCAGGCGTAT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5