BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476964
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78020.1 | Symbols: | Protein of unknown function (DUF581) ... 1227 0.0
> AT1G78020.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:29338693-29339755 FORWARD LENGTH=847
Length=847
Score = 1227 bits (664), Expect = 0.0
Identities = 731/763 (96%), Gaps = 6/763 (1%)
Strand=Plus/Plus
Query 61 GAATACGATGTTGCTTGGGAAGAGACAACGACCACCTATTAACAGAACCACAAGTCTATC 120
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 88 GAATACGATGTTGCTTGGAAAGAGACAACGACCACCGATCAACAGAACCACAAGTCTATC 147
Query 121 GGAGATAAAGTTCGATCTAAACCTTCCCAGCGAATCAGAGCCGTCAAATCAACAGAATCA 180
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 148 GGAGATAAAGTTCGATCTAAACCTTCCCAGCGAGTCAGAGCCATCAAATCAACAGAAGCC 207
Query 181 AACCGTGGTGAGCCCGTACGGTTCCAACGGTCAAGCCGTAACAGCAGCCGTCGATCAAAA 240
|||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 208 AACCGTTGCGAGCCCGTACGGTTCCAACGGTCAAGCTGTAACAGCAGCCGTTGATCAAAA 267
Query 241 CCGTGCGTTCTTAGATCAACGGTTCTTATCTATGGTCTCACCGAGAGGTAACCTGAGGAG 300
||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 268 CCGTGGGTTCTTAGATCAACGGCTCTTATCCATGGTCACACCGAGAGGTAACCTGAGGAG 327
Query 301 ACACTCAGGCGATTTCTCCGACGCTGGACATTTCTTGAGATCTTGCTCACTTTGTGAACG 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 328 ACACTCAGGCGATTTCTCCGACGCTGGACATTTCTTGAGATCTTGCGCACTTTGTGAACG 387
Query 361 TCTTCTTGTTCCTGGCCGTGACATCTATATGTATAGGGGAGATAAGGCCTTTTGTAGCTC 420
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 388 CCTTCTTGTTCCTGGCCGCGACATCTATATGTATAGGGGAGATAAGGCTTTTTGTAGCTC 447
Query 421 AGAGTGCAGGCAAGAGCAAATGGCACAAGATGAGAGGAAAGAGAAAGGTAAATCGGCGGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AGAGTGCAGGCAAGAGCAAATGGCACAAGATGAGAGGAAAGAGAAAGGTAAATCGGCGGC 507
Query 481 ACCGGCGAAAGAACCGGCGGTGACAGCTCCGGCGAGAGCGAAACCCGGTAAAGGGAGAGC 540
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 508 ACCGGCGAAAGAACCGGCGGTGACAGCTCCCGCGAGAGCGAAACCCGGCAAAGGGAGAGC 567
Query 541 TGCAGCCGCCGTGTAATCCCCATTTTCATATACA-TTTAGTTATATATGTGTGTGGTTTG 599
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 568 TGCAGCCGCCGTGTAATCCCCATTTTCATATACATTTTAGCTATATATATGTGTGGTTTG 627
Query 600 CTATGTGTTTGTATATGATTATGATGGGTAATACATATATAAAGCATTAAGCGTTAATTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CTATGTGTTTGTATATGATTATGATGGGTAATACATATATAAAGCATTAAGCGTTAATTA 687
Query 660 ACCGTGATTAACTGTGTTAATCACCCTCGTGTTGTGGTGAAAGTAGATGATTTTTCGAGG 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 688 ACCGTGATTAACTGTGTTAATCACCCTCGTGTTGTGGTGAAATTAGATGATTTT-CGAGG 746
Query 720 GTTCAAATTTTACAAGTTTTGATCTATTTCAAATAAAATCAAATGTATTATATAT--GTA 777
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 747 GTT-AAATTTTACAAGTTTTGATCTATTTGAAATAAAATCAAATGTATTATATATATGTA 805
Query 778 AGACTTGTGtttttttAAGTACTTAATGAGAAAAATTAAGATT 820
|||||||||||| || |||||||||||||||||||||||||||
Sbjct 806 AGACTTGTGTTTGTT-AAGTACTTAATGAGAAAAATTAAGATT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5