BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476975
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78080.1 | Symbols: RAP2.4 | related to AP2 4 | chr1:2936424... 1700 0.0
AT1G22190.1 | Symbols: | Integrase-type DNA-binding superfamil... 206 6e-52
> AT1G78080.1 | Symbols: RAP2.4 | related to AP2 4 | chr1:29364249-29366073
FORWARD LENGTH=1825
Length=1825
Score = 1700 bits (920), Expect = 0.0
Identities = 1257/1407 (89%), Gaps = 73/1407 (5%)
Strand=Plus/Plus
Query 1 CTTCTGTGAATCATCTGTCTTTCAAAAAGAAATAGAAAAG-AAAATTCGATTTCTGGGTT 59
||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 171 CTTCTGTTAATCATCTGTCTTTCAAAAAGAAAGAAAAAAGAAAAATTCGATTTCTGGGTT 230
Query 60 TGTTTTTGTCATACAG--AAAAATCAAGCTTATGAATTTGTGTTCAATTTTTTGTTTTAA 117
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 231 TGTTTTTGTCATACAGAAAAAAATCAAGCTTATGAATTTGTGTTTAATTTTTTGTTTTAA 290
Query 118 TTTGAAAGGCAGGTATTTTCAGAACGAGAtctttttttcaaatttcttctgattttaccc 177
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 291 TTTGAAAGGCAGGTTTTTTCAGAACGAGATCGTTTTTTCAAATTTCTTCTGATTTTA-CC 349
Query 178 tttttttcttcttcttagattttAGTAAACCGAGGGTG-AATTTTTGATTCCCTCTTTTC 236
| ||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 350 TCTTTTT-TTCTTCTTAGATTTTAGTGAATCGAGGGTGAAATTTTTGATTCCCTCTTTTC 408
Query 237 GGATCTA-ACAGAGGTTGCTTATTTCAAACCTTTTAGATCCAttttttttatttttcttg 295
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 409 GGATCTACACAGAGGTTGCTTATTTCAAACCTTTTAGATCCA------TT-TTTTT-TT- 459
Query 296 aattttctcgg-aaaatccttgtttctttactttttt-t---tttC-GGATTCAA--ATG 347
||||||||||| ||||||| ||||||||||||||||| | | || || ||||| |
Sbjct 460 AATTTTCTCGGAAAAATCCCTGTTTCTTTACTTTTTTATAAGTCTCAGG-TTCAATTTTT 518
Query 348 GCAGCTGC---TATGAATTTGTACA--GTAG-TAGC-A-GAACGTT-T-CA--AGCATCA 395
| | | | | | |||| || | | || | || | ||| || | || | | ||
Sbjct 519 TCGGATTCAAATTTTTATTT-TAAATGGCAGCT-GCTATGAA-TTTGTACACTTGTAGCA 575
Query 396 GATTCGTTTGGTG-GTAGTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAG 454
|| |||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GA-TCGTTTCAAGACT-CTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAG 633
Query 455 CGTTTCCGATTCCCCTTCTTCCGCGTCTGC-GTTTCTTCATC-CCGCAGCTTC-TGCGTC 511
|||||||||||| |||||||| | ||||| | ||| | || || |||| | ||
Sbjct 634 CGTTTCCGATTCTCCTTCTTCTTCTTCTGCAGCGTCTGCGTCTGCGTTTCTTCACCCCTC 693
Query 512 TGCGTTTTCTCTTCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTTCTTGACCCAACC 571
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TGCGTTTTCTCTCCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTTCTTGACCCAACC 753
Query 572 GTTTTCATACGGGTCGGATCTTCAACAAACCGGATCGTTAATCGGGCTCAACAACCTCTC 631
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 754 GTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTC 813
Query 632 TTCTTCTCAAATCCACCAGATCCAATCTCAGATCCATCATCCTCTACCTCCGACGCAT-- 689
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 814 TTCTTCTCAGATCCACCAGATCCAGTCTCAGATCCATCATCCTCTTCCTCCGACGCATCA 873
Query 690 C-ACAACAAC-A--CTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTCATGAAGCAATC 745
| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 874 CAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTGATGAAGCAATC 933
Query 746 TGGAGTCGCCGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTCCCAAGCCGACGAAGCT 805
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 934 TGGAGTCGCTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCT 993
Query 806 TTACAGAGGTGTGAGGCAACGTCACTGGGGTAAATGGGTGGCTGAGATCCGTTTGCCGAG 865
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 994 TTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGATCCGTTTGCCGAG 1053
Query 866 GAATCGGACTCGTCTCTGGCTTGGGACCTTTGACACGGCGGAGGAAGCTGCGCTGGCCTA 925
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1054 AAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTA 1113
Query 926 TGATAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTCCCTAACCTACG 985
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TGATAAGGCGGCGTACAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTCCCTAACCTACG 1173
Query 986 TCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATACAAACCTCTTCACTCTTCAGT 1045
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1174 TCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGT 1233
Query 1046 CGACGCTAAGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGAGAAACC 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1234 CGACGCTAAGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATC 1293
Query 1106 GACGAAATCATCGAAGAAACGTGGTTCATCGGTGACGGAGAAGAAGGTTTCGTCGCCAGA 1165
||||||||||||||||||||||| | | | ||||| | |||||||||||||
Sbjct 1294 GACGAAATCATCGAAGAAACGTG----A--G---A---AGAAG--G-TTTCGTCGCCAGA 1338
Query 1166 TCTAACGGAGAAAGAAGTCAAGGCGGAGGAAAAATCGGTCTCGA-CTGCTGGATCTCCAC 1224
|||| ||||||||| | ||||||||||| || ||||| |||| | | |||||||||||
Sbjct 1339 TCTATCGGAGAAAGT-G--AAGGCGGAGGAGAATTCGGTTTCGATCGG-TGGATCTCCAC 1394
Query 1225 CAGTGACGGAGTTTGAAGAGTCCACCGCCGGATCTTCGCCGTTGTCGGACTTGACCTTCG 1284
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1395 CGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCGGACTTGACGTTCG 1454
Query 1285 CTGATCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTTTCCGTCGT 1344
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1455 CTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGT 1514
Query 1345 ACGAGATCGATTGGGATTCGATT-TAG 1370
||||||||||||||||||||||| |||
Sbjct 1515 ACGAGATCGATTGGGATTCGATTCTAG 1541
> AT1G22190.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:7835782-7837288 FORWARD LENGTH=1507
Length=1507
Score = 206 bits (111), Expect = 6e-52
Identities = 256/321 (80%), Gaps = 29/321 (9%)
Strand=Plus/Plus
Query 795 CCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGTAAATGGGTGGCTGAGATC 854
||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 698 CCGACGAAGCTATACAGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATT 757
Query 855 CGTTTGCCGAGGAATCGGACTCGTCTCTGGCTTGGGACCTTTGACACGGCGGAGGAAGCT 914
||||| ||||||||||| ||||| || ||||| || || || ||||||||||||||||||
Sbjct 758 CGTTTACCGAGGAATCGAACTCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCT 817
Query 915 GCGCTGGCCTATGATAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTC 974
|| | || ||||| ||||||||||||||||| || || ||||| || |||||||| |||
Sbjct 818 GCTTTAGCTTATGACAAGGCGGCGTATAAGCTCCGAGGAGATTTTGCGCGGCTTAATTTC 877
Query 975 CCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATACAAACCTCTT 1034
||| | | | || | | ||| | | || ||| || || | ||||||||
Sbjct 878 CCTGA--T-C-TC----C-G---TCATAAC-GA--CGA-----GT--AT-C-AACCTCTT 913
Query 1035 CACTCTTCAGTCGACGCTAAGCTTGAAGCTATTTGT-AAAAGCATGGC-G-GA-GACTCA 1090
|| || |||||||||||||||||||||||||||||| |||| | | || | || ||| ||
Sbjct 914 CAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAA-CTTAGCTGAGACGACGCA 972
Query 1091 GAAACAGGAGAAACCGACGAA 1111
|||||||| || | | |||||
Sbjct 973 GAAACAGGTGAGATCAACGAA 993
Score = 97.1 bits (52), Expect = 4e-19
Identities = 99/119 (83%), Gaps = 13/119 (11%)
Strand=Plus/Plus
Query 1257 TCTTCGCCGTTGTCGGA-CTTGACCTTCGCTGAT-C--CGGAGGAG---CCGCCGCAGTG 1309
||||||||||||||||| | |||| || | |||| | ||||||| | ||||| |||
Sbjct 1109 TCTTCGCCGTTGTCGGAGC-TGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTG 1167
Query 1310 GAACGAG-ACGTTCTCGTTGGAGAAGTTTCCGTCGTACGAGATCGATTGGGATTCGATT 1367
||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1168 GAACGAGAACG----CGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67469532480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5