BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476976
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78090.1 | Symbols: ATTPPB, TPPB | trehalose-6-phosphate pho... 2037 0.0
AT1G22210.1 | Symbols: TPPC | Haloacid dehalogenase-like hydrol... 516 2e-145
> AT1G78090.1 | Symbols: ATTPPB, TPPB | trehalose-6-phosphate phosphatase
| chr1:29373889-29376504 FORWARD LENGTH=1400
Length=1400
Score = 2037 bits (1103), Expect = 0.0
Identities = 1283/1365 (94%), Gaps = 32/1365 (2%)
Strand=Plus/Plus
Query 1 tctctctctacatctctttctttctctgtcttctctctgtctcAACGAGAATATGACTAA 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TCTCTCTCAACATCTCTCTCTTTCTCTGTCTTCTCTCTGTCTCAACGAGAATATGACTAA 74
Query 61 CCAGAATGTCATCGTTTCCGACAGAAAACCCATCTTGGGTTTGAAAACCATCACTGTCTC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 75 CCAGAATGTCATCGTTTCCGACAGGAAACCCATCTTGGGTTTGAAAACCATCACTGTCTC 134
Query 121 TGTCACTAACTCTCCTCTGTTCTCTAATTCATTTCCCACTTACTTTAACTTCCCTCGTCG 180
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 135 TGTCTCTAACTCTCCTCTGTTCTCTAATTCCTTTCCCACTTACTTTAACTTCCCTCGTCG 194
Query 181 AAAGTTGTTGAAACTTCTTGAAGTAGCCGACAAGAACAACAACAACAACTTAGTTGTTGC 240
|||| | |||||||||||||||| || | | | || | || |||||||||||||||||
Sbjct 195 AAAGCTCTTGAAACTTCTTGAAGCAG-C--C--G-AC-A-AA-AACAACTTAGTTGTTGC 245
Query 241 TCCAAAGATTACATCTTTGATCGTTTCCATGCGTGATTCTTCCCCTACACGTCTCAGATC 300
|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 246 TCCAAAGATTACGTCTATGATCGATTCCATGCGTGATTCTTCCCCTACACGTCTCAGATC 305
Query 301 CTCTTCCCATGACTCTGTCTCAGATATCGACGACAAAACATCTTGGATCGTTAGATTTCC 360
||||||| |||||||||| ||||||| ||||||||||||||||||||||||| | |||||
Sbjct 306 CTCTTCCTATGACTCTGTTTCAGATAACGACGACAAAACATCTTGGATCGTTCGTTTTCC 365
Query 361 TTCGGCTTTAAATATGTTTGATGAGATTGTGAATGCTGCGAAAGGGAAACAGATTGTTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 TTCGGCTTTAAATATGTTTGATGAGATTGTGAATGCTGCGAAAGGGAAACAGATTGTCAT 425
Query 421 GTTTCTTGATTACGACGGAACTCTTTCTCCCATAGTTGAAGATCCCGACAAAGCTTTCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GTTTCTTGATTACGACGGAACTCTTTCTCCCATAGTTGAAGATCCCGACAAAGCTTTCAT 485
Query 481 AACCCATGAGATGCGAGATGTTGTAAAAGACGTGGCTTCGAATTTTCCGACTGCTATCGT 540
||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct 486 AACCCATGAGATGAGAGAAGTCGTAAAAGACGTGGCTTCGAATTTCCCGACTGCTATTGT 545
Query 541 CACCGGAAGATCCATAGATAAGGTTCGTAGTTTTGTCAAAGTAAACGAGATTTACTACGC 600
|||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 546 CACCGGGAGATCCATTGAGAAGGTTCGTAGTTTTGTCCAAGTAAACGAGATTTACTACGC 605
Query 601 CGGAAGCCACGGCATGGACATTAAAGGTCCGACCAACGAAAATAGTTACGGCCAGAGTAA 660
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 606 CGGAAGCCACGGCATGGACATTGAAGGTCCGACCAACGAAAATAGTAACGGCCAGAGTAA 665
Query 661 TGAAAGAGTGCTATTCCAACCTGCACGTGAATTTTTACCAATGATCGAGAAGGTGGTTAA 720
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 666 TGAAAGAGTGCTATTCCAACCTGCTCGTGAATTTTTACCGATGATCGAGAAGGTGGTTAA 725
Query 721 GATTTTGGAGGAAAAGACAAAATGGATCCCTGGGGCTATGGTGGAGAACAACAAGTTTTG 780
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TATTTTAGAGGAAAAAACAAAATGGATCCCTGGGGCTATGGTGGAGAACAACAAGTTTTG 785
Query 781 TCTATCCGTACATTTTCGACGTGTTGATGAGAAGAGATGGACTGCATTAGCTGAAGTAGT 840
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 TCTGTCCGTACATTTTCGACGTGTTGATGAGAAGAGATGGCCTGCATTAGCTGAAGTAGT 845
Query 841 AAAATCAGTTCTTATTGATTATCCAGAGCTGAAACTAACCCAGGGTAGAAAGGTGCTTGA 900
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 846 AAAATCAGTTCTTATTGATTATCCAAAGCTGAAACTAACCCAAGGTAGAAAGGTACTTGA 905
Query 901 AATCCGCCCCACAATCAAATGGGACAAGGGCCAGGCACTCAATTTTTTACTAAAATCATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AATCCGCCCCACAATCAAATGGGACAAGGGCCAGGCACTCAATTTTTTACTAAAATCATT 965
Query 961 AGGATATGAGAATTCGGAAGATGTTGTGCCGGTGTACATCGGGGATGACCGTACTGACGA 1020
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 966 AGGATATGAAAATTCGGATGATGTTGTGCCGGTGTATATCGGGGATGACCGTACTGACGA 1025
Query 1021 AGATGCGTTTAAGGTTTTACGTGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGATGCGTTTAAGGTTTTACGTGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGT 1085
Query 1081 TCCAAAGGACACCAATGCCTCTTATTCTCTACAAGACCCTTCTCAGGTTAACAAGTTTCT 1140
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1086 ACCAAAGGACACCAATGCCTCTTATTCTCTTCAAGACCCTTCTCAGGTTAACAAGTTTCT 1145
Query 1141 GGAGCGTTTAGTGGAGTGGAAGAGGAAGATAGTGGGAGAAGAGTGAAAGACATGCGACAT 1200
||| |||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1146 GGAACGTTTAGTAGAATGGAAGAGGAAGACAGTGGGAGAAGAGTGAAAGACATGCAACAT 1205
Query 1201 AATT-------T------TGAGT----AG-A--TTATTAGTTTATATAAACACCCTTTT- 1239
|||| | ||||| || | |||||| |||||||||||||||||||
Sbjct 1206 AATTACACAAATAACACCTGAGTTTTGAGTAGATTATTAATTTATATAAACACCCTTTTT 1265
Query 1240 AAATTAGTAGATGCCTGGAGGGTGTTTCGGCCAGAAGTGttttttttttAATCTACATCG 1299
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 1266 AAATTAGTAGATGCCTGGAGGGTGTTTCGGCCAGAAGT-TTTTCTTTT-AATCTACATCG 1323
Query 1300 AACCGAAAATTGTAAATTTCGTGTAACGATTTAGAAATGGAAAAA 1344
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AACCGAAAATTGTAAATTTCGTGTAACGATTTAGAAATGGAAAAA 1368
> AT1G22210.1 | Symbols: TPPC | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7841518-7844056 FORWARD
LENGTH=1207
Length=1207
Score = 516 bits (279), Expect = 2e-145
Identities = 623/783 (80%), Gaps = 48/783 (6%)
Strand=Plus/Plus
Query 402 AAGGGAAACAGATTGTTATGTTTCTTGATTACGACGGAACTCTTTCTCCCAT-AGTTGAA 460
|||| ||||| ||| |||||||||||||||||||||||||||| || | || | | |||
Sbjct 188 AAGGCAAACAAATTATTATGTTTCTTGATTACGACGGAACTCTCTCGCTAATCACT-GAA 246
Query 461 GATCCCGACAAAGCTTTCATAACCCATGAGATGCGAGATGTTGTAAAAGACGTGGCTTCG 520
|||| ||||| ||| | ||||||| | ||||||||||| |||||||| || |||||| |
Sbjct 247 GATCACGACAGAGCCTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAGTGGCTAC- 305
Query 521 A-ATTTTCC-GACTGCTATCGTCACCGGAAGATCCA-TAGATAAGGTTC-GTAGTTTTGT 576
| |||| | ||| || ||| ||| |||| || || | || || || | | ||||||||
Sbjct 306 ATATTT-CAAGACAGCGATCATCAGCGGACGAAGCACT-GACAAAGTACAG-AGTTTTGT 362
Query 577 CAAAGTAAAC-GAG-ATTTACTACGCCGGAAGCCACGGCATGGACATTAAAGGTCCGACC 634
||| | | | | | ||| ||||||| || |||||||||||||||||||| ||||||||
Sbjct 363 GAAACTCA-CTG-GTATTCACTACGCTGGGAGCCACGGCATGGACATTAAGGGTCCGACA 420
Query 635 AA--C-GAAAATAGTTACGGCCAGAGTAATGAAA-GAGTGCTATTCCAACCTGCACGTGA 690
|| | || | ||| || | | || || ||| || || | ||| |||||||| ||||
Sbjct 421 AATACCGATCAGAGTAAC--C-A-AG-AA-GAAGTGA-TG-T-TTC-AACCTGCAAGTGA 470
Query 691 ATTTTTACCAATGATCGA-GAAGGTGGTTAA-GATTTTGGAGGAAAAGACAAAATGGATC 748
| |||||| ||||| || || ||||||||| | ||||| ||||||||||||||| |||
Sbjct 471 CTATTTACCGATGATTGACGA-GGTGGTTAATG-TTTTGAAGGAAAAGACAAAATCTATC 528
Query 749 CCTGGGGCTATGGTGGAGAACAACAAGTTTTGTCTATCCGTACATTTTCGACGTGTTGAT 808
||||| |||| ||| ||| ||||||||||||||||| | ||||||||||| || || |||
Sbjct 529 CCTGGAGCTACGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGGGTCGAT 588
Query 809 GAGAA-GAGATGGACTGCATTAGCTGAAGTA-GTAAAATCAGTTCTTATTGATTATCCAG 866
|| || | ||||| ||||||||||||| | | || | || ||||| ||||||||||| |
Sbjct 589 GA-AACGGGATGGGCTGCATTAGCTGA-GCAAGTGAGATTGGTTCTCATTGATTATCC-G 645
Query 867 AGCT-GAAACTAACCCAGGGTAGAAAGGTGCTT-GAAATCCGCCCCACAATCAAATGGGA 924
| | || ||| || || || |||||||| ||| ||| |||| || | |||||||||||
Sbjct 646 AAATTGAGACTGACACAAGGCAGAAAGGT-CTTAGAACTCCGACCTTCCATCAAATGGGA 704
Query 925 CAAGGGCCAGGCACTC-AATTTTTTACTAAAATCATTAGG-ATATG-AGAATTCGGAAGA 981
|||||| |||| ||| ||||||| ||||| |||||||| ||| | ||||| | ||||
Sbjct 705 CAAGGGAAAGGCTCTCGAATTTTTG-CTAAACTCATTAGGGATA-GCAGAAT-CTAAAGA 761
Query 982 TGTTGTGCCGGTGTACATCGGGGATGACCGTACTGACGAAGATGCGTTTAAGGTTTTACG 1041
|||| | ||||| ||||| || |||||||||||||| |||||||| |||||||||||| |
Sbjct 762 TGTTTTACCGGTTTACATTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATG 821
Query 1042 TGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGTTCCAAAGGACACCAATGCCTC 1101
||||||||||||||||||||||||| | ||||||||| | ||||| || | |||||
Sbjct 822 TGAAAGGGGACAAGGTTTTGGGATTATCGTCTCAAAAACTATTAAGGAAACGTACGCCTC 881
Query 1102 TTATTCTCTACAAGACCCTTCTCAGGTTAAC-AAGTTTCTGGAGCGTTTAGTGGAGTGGA 1160
||| ||||| |||||||| ||||||||||| || |||||||||||||| || ||||||
Sbjct 882 TTACTCTCTTCAAGACCCATCTCAGGTTAAAGAA-TTTCTGGAGCGTTTGGTAAAGTGGA 940
Query 1161 AGA 1163
|||
Sbjct 941 AGA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5