BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476977
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-... 1657 0.0
> AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-29389112
FORWARD LENGTH=1318
Length=1318
Score = 1657 bits (897), Expect = 0.0
Identities = 1039/1107 (94%), Gaps = 12/1107 (1%)
Strand=Plus/Plus
Query 23 AACACAAAGTGAG--AGAACTCTCTAAACAGTCCCGAAGGTTTCAAAAGGGTATTTTAGT 80
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 36 AACACAAAGTGAGACAGAACTCTCTAATTAGTCCCGAAGGTTTCAAAAGGGTATTTTGGT 95
Query 81 AAAACCATAGAAAAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 140
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 -AAA--ATCG--AAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 150
Query 141 CGACATTTTGAACAAAGTCGGTGACGTCAAAACGTTAATACGATGCCGTTCCGTTTCCAA 200
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 151 CGACATTTTGAACAGAGTCGGTGACGTCAAAACGTTAATACGATGTCGTTCCGTTTCTAA 210
Query 201 ACGATTCAACTCGTTAGCCACTCAGTCCGACTCACTCCTTCTTCAACTCGATCAGATCCT 260
||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 211 ACGATTCAACTCGTTAGCCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCT 270
Query 261 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCGATCGCTAGCTTCTTCCGATCTCT 320
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 271 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGATCTCT 330
Query 321 GTTCAAATCCATTTACGGTCTCCT-CC-C-TAGCTTCTCCAAACCAGCTAAAACTGACGA 377
|||||||||||| |||||||||| || | || |||||||||||||||||| |||||||
Sbjct 331 CTTCAAATCCATTCACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCTAACTCTGACGA 390
Query 378 AATCTTAACCCGATCCCCGAAAACTCCGGCTCAGATTCTCGCCGGATTTGAACGGATCCG 437
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 391 AATCCTAACCCGATCTCCGAAAACTCCGGCTCAGATTCTCTCCGGATTTGAACGGATCCG 450
Query 438 GAATCTGGAGGTGGAGTTATACGGCGGAGATGTCAAGCTCGAGAAAGGCGCCGCCGTTAA 497
||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 451 GAATCTGGAGGTGGAATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAA 510
Query 498 GTGGAAGGCTGAGTTCGGAAAAACTCTCAAGAGCTGCGTCATCGTTGCTTTCCGTTCCGC 557
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 511 GTGGAAGGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGC 570
Query 558 GACGGTTAATACTTCAGCAGCTACGGAATCTGCCGCCGTCGTTGACGGTGGCGTGGAGTC 617
|||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||
Sbjct 571 GACGGTTAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTC 630
Query 618 TGATTCGGAGTTCGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 677
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGATTCGGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 690
Query 678 GGCGGCTTCGACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 737
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GGCGGCTTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 750
Query 738 GAAATTGATTGTGCGTGACAGAGAAGGAGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 797
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 751 GAAATTGATTGTGCGTGACAGTGATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 810
Query 798 GAAAGAATACAGAGAGACGGAGGCGCGTGGAGATGATAAA-ACATTAGAGCGCGTGGGTG 856
||||||||||||||||||||||| |||||| ||| ||||| | || |||||||||||| |
Sbjct 811 GAAAGAATACAGAGAGACGGAGGTGCGTGGGGATAATAAAGA-ATCAGAGCGCGTGGGGG 869
Query 857 AACGCACGGTGGTTCCTAGCGTCAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 916
|||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 870 AACGAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 929
Query 917 AGAGCGGGATTTGTCTTGAAGCCGCGACGCTGGTTGTCGTAAGGCCGACTGGTGTGGCTT 976
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 930 AGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCTT 989
Query 977 CCGATGATAACGATGTTGAGCTGGTGACTGAGGCGTTTGCCGGAGATGGCGGTGATTGTA 1036
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 990 CCGATGATAACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGATGGCGACGATTGTA 1049
Query 1037 TGTACGGAGAAGCCGTTACGGCGTTGCTCAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1096
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1050 TGTACGGAGAAGCTGTTACGGCGTTGCTTAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1109
Query 1097 CTTTCTAAGGCCTAATGGGCttttttt 1123
|||||||||||||| ||||||||||||
Sbjct 1110 CTTTCTAAGGCCTAGTGGGCTTTTTTT 1136
Score = 244 bits (132), Expect = 1e-63
Identities = 144/150 (96%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 1124 TATATACATACGCATCGTACAAAGCCGACCGTACTATTGGCGTACGACTTTTGGGTCAAA 1183
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1167 TATATACATACGCATCGTACAAAGCCAACTGTACTATTGGCGTACGACTTTTGGGTCAAA 1226
Query 1184 TGACATCGAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGACATCAAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1286
Query 1244 GCAGCTAATATAATATATAGATATGATTCG 1273
||| ||||||| ||| ||||||||||||||
Sbjct 1287 GCATCTAATATTATACATAGATATGATTCG 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5