BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476978
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1903 0.0
> AT1G78110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G22230.1);
Has 5452 Blast hits to 3541 proteins in 289 species: Archae
- 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants
- 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI
BLink). | chr1:29391827-29393334 FORWARD LENGTH=1508
Length=1508
Score = 1903 bits (1030), Expect = 0.0
Identities = 1196/1272 (94%), Gaps = 27/1272 (2%)
Strand=Plus/Plus
Query 1 ATCGATCcaaaaaccaaaccccaagaaaacaaaagcagactaaaaaaaaGCTATGATCAA 60
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 ATCGATCCAAAAACCAAACACCAAGAAAACAAAAGCAGACTTAAAAGAAGCTATGATCAA 60
Query 61 AGGAAACAATGGAAACAGAGGATCTTCATCTTCTGGTTACTCTGCCGATTTGTTGGTTTG 120
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 AGGAAACAATGGAAACAGAGGATCTTCTTCTTCTGGTTACTCTGCAGATTTGTTGGTTTG 120
Query 121 TTTCCCTTCAAGAGCCCACTTAGCTCTGACTCCTAAGCCCATTTGTAGCCCATCTCGTCT 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCCCTTCAAGAACCCACTTAGCTCTGACTCCTAAGCCCATTTGTAGCCCATCTCGTCC 180
Query 181 CTCCGACTCCTCCATTAACCGTCGTCCCCAACACCGTCGCCAGCTCAGTAAACTCTCCGG 240
||| ||||| |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 CTCAGACTCTTCCACTAACCGTCGTCCTCACCACCGTCGCCAGCTCAGTAAACTCTCCGG 240
Query 241 CGGCGGTGGAGGA--A-ACGGTAGTCCTGTTTTGTGGGCTAAACAAGCAAGCAGTAAGAA 297
||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CGGCGGTGGAGGAGGACACGGTAGTCCTGTTTTGTGGGCTAAACAAGCAAGTAGTAAGAA 300
Query 298 TATGGGCGGTGACGAAATAGCCGAACCGACTTCTCCTAAAGTAACTTGCGCCGGTCAGAT 357
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 301 TATGGGAGGTGACGAAATAGCAGAACCAACTTCTCCTAAAGTAACTTGCGCAGGTCAGAT 360
Query 358 CAAAGTCCGGCCAAGTAAATGCGGCGGGAGAGGAAAGAATTGGCAATCGGTGATGGAAGA 417
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 361 CAAAGTCCGGCCAAGTAAATGCGGAGGGAGAGGAAAGAACTGGCAATCGGTGATGGAAGA 420
Query 418 GATTGAGAGGATACATGATAATAGATCGCAAAGCAAGTTTTTTGGATTGAAGAAAGATGT 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GATTGAGAGGATACATGATAATAGATCGCAAAGCAAGTTTTTTGGGTTGAAGAAAGATGT 480
Query 478 GATGGGTTTCTTGACTTGTCTTAGAAACATCAAATTCGATTTCAGGTGTTTTGGTGATTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGGGTTTCTTGACTTGTCTTAGAAACATCAAATTCGATTTCAGGTGTTTTGGTGATTT 540
Query 538 CCGACATGCTGATGTCACAAGCGACGACgatgaggaagaagatgatgatgatgatgacga 597
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CCGACATGCTGATGTCACTAGCGACGACGATGAGGAAGAAGATGATGATGATGATGAGGA 600
Query 598 ggaagaagaag-gcgaaagagaagaagaagagaaCTCAAAGACTGTTTTCTCCAAATGGT 656
||||| | || | ||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 601 AGAAGAGGTAGTG-GAAGGAGAAGAAGAAGAGAATTCAAAGACTGTTTTCTCTAAATGGT 659
Query 657 TTATGGTTTTACAAGAGGAACAGAGCAACAAAGATGACGACAAGAACAACAGCAAGTGTG 716
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 660 TTATGGTTTTACAAGAGGAACAGAACAACAAAGATGACGACAAGAACAACAACAAGTGTG 719
Query 717 ATGAGAAACGCGATCTTGAAGACACAGAGACAGAGCCAGAGGTTCCGCCGCCAAACGCGC 776
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 720 ATGAGAAACGCGATCTTGAAGACACAGAGACAGAACCAGCGGTTCCGCCGCCAAACGCGC 779
Query 777 TTTTGCTGATGCGATGTAGATCAGCTCCAGCGAAGAGTTGGCTagaagagagaatgaaag 836
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 TTTTGTTGATGCGGTGTAGATCAGCTCCAGCGAAGAGTTGGTTAGAAGAGAGAATGAAAG 839
Query 837 taaaaacagagcaagaaaacagagaagagcaacaagaagaggaagaggaaaaagaaacag 896
||||||||||||||||||| |||||||| | ||| || || | | | ||||||||||||
Sbjct 840 TAAAAACAGAGCAAGAAAAGAGAGAAGA--A-CAA-AA-AG-A-G-G-AAAAAGAAACAG 890
Query 897 aggatcaagaaacgagtatgaagacaaagaagaaggaTTTGAGGTCATTAATGGAGGAAG 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 891 AGGATCAAGAAACGAGTATGAAGACAAAGAAGAAGGATTTGAGATCATTAATGGAAGAAG 950
Query 957 AGAAGATGGAATTGGTGTTGATGAGATACGATACTGAGTTTTACAGACTCTCTTCAGACA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGAAGATGGAATTGGTGTTGATGAGATACGATACTGAGTTTTACAGACTCTCTTCAGACA 1010
Query 1017 TAGCTAAGGAAACTTGGGTTGTCGGCGGAATTCAAGATCCTCTGTCTCGGAGTCGAAGCT 1076
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 TAGCTAAGGAAACTTGGGTTGTCGGAGGAATTCAAGATCCTCTGTCTCGGAGTCGAAGCT 1070
Query 1077 GGAAAAGTTGATTATACATATCCTCCACCGTTACTCATCATTAAACATCGTATTTTTAAA 1136
|||||| ||||||| ||| || || | |||||||||||| ||||||||||||||| |||
Sbjct 1071 GGAAAAATTGATTACACAGAT--TC-ATCGTTACTCATCAGTAAACATCGTATTTT-AAA 1126
Query 1137 AATCTAATCAAGCGTTTTTACTACA-TTTGATTATCTGTTAATTAATTTTGATACT--CG 1193
|| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1127 AACCTAATCAAGCGTTTTTACTATAATTTGATTATCTGTTAATTAATTTTGATACTTACA 1186
Query 1194 ttttttttttctttgggtttcttgaggtttttttttCATGGTTCTTCTTCTCCCTT-GTT 1252
|||||||||| ||||||||||||||| |||||||| ||||||||||| | || || |||
Sbjct 1187 TTTTTTTTTT-TTTGGGTTTCTTGAG-TTTTTTTTA-ATGGTTCTTCT-C-CCTTTTGTT 1241
Query 1253 TCGTATCTCAAA 1264
||||||||||||
Sbjct 1242 TCGTATCTCAAA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62148274710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5