BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476979
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-l... 2639 0.0
> AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29393939-29396086 REVERSE LENGTH=1758
Length=1758
Score = 2639 bits (1429), Expect = 0.0
Identities = 1625/1719 (95%), Gaps = 16/1719 (1%)
Strand=Plus/Plus
Query 1 TCTTACTCCTCTGTTTCATCGAACTCTTTCTTCACTG-TGCTTATTTTC-T-AAAGCTTC 57
|||| ||||||||||||||| ||||| ||| ||| || | ||||||||| | ||||||||
Sbjct 1 TCTTTCTCCTCTGTTTCATCAAACTC-TTCATCAGTGCTTCTTATTTTCTTCAAAGCTTC 59
Query 58 AAA---CtttttttCTCTTCTTGAAATGGCCAAATCGAAGAAAATCTCTACGGGTCAACT 114
||| ||||||||| ||||||| |||||| |||||||||||||| ||||| |||||| |
Sbjct 60 AAATTTCTTTTTTTC-CTTCTTGCAATGGCAAAATCGAAGAAAATTTCTACAGGTCAAAT 118
Query 115 ATTTGGTTGTGAGAGTCTCCTTGGATGTATTTTCCAAAGCTGGAGCCCTCGCCGGCGAAA 174
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 119 ATTTGGTTGTGAGAGTCTCCTTGGGTGCATTTTCCAGAGCTGGAGCCCTCGCCGTCGAAA 178
Query 175 ACCCTCTTTACCGGAAAAAGATCATCGGGCAAAAGATAACTTGCCTTCCAAGTCATCAAC 234
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ACCCTCTTTACCGGAAAAGGATCATCGGGCAAAAGATAACTTGTCTTCCAAGTCATCAAC 238
Query 235 CACCGTTACAAACCCTAAAATCCTCCCAAGAAAATCGACCGATACTTCTTCTCAACCAAA 294
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 AACCGTTACAAACCCTAAAATCCTCCCAAGAAAATCCACCGATACTTCTTCTCAACCAAA 298
Query 295 GAAATCTGA-TCCTCAGAAACCCCAGCAAAAACAAAAATCC-GATGAGAATCTCCCGAGA 352
||||||||| ||| ||||||||||| ||||| | |||| || |||||||||| |||| ||
Sbjct 299 GAAATCTGACTCC-CAGAAACCCCAACAAAAGCCAAAA-CCAGATGAGAATCACCCGCGA 356
Query 353 AAATCATCGGATTCTGCCAGAAAATCATCAGATTCCGCAAGAAAATCGATTTCGTCAGGC 412
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 AAATCATCGGAATCCGCCAGAAAATCATCTGATTCCGCAAGAAAATCGATTTCGTCAGGC 416
Query 413 TCATCAAGAACAGAGAGCAAGAGATTCTCACTTAACGGCGTTATGGGAAACATTATAGTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 417 TCATCAAGAACAGAGAGCAAGAGATTCTCACTTAACGGCGTTATGGGAAACATCATCGTG 476
Query 473 AAACCACAGCCCGCCGTTAAAGCTGACGTGACACAGACGAGAAGACGGTGGGAGGGCAAA 532
||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||| |||
Sbjct 477 AAACCACAGCCAGCCGTTAAAACTGACGTGACACAGACGAAAAGTCGGTGGGAGGGTAAA 536
Query 533 CCGGTAAATTACAGACTCGATCCAGAGACTCTGAAGAAAATGGGAAACGAAGAGTATTGT 592
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCGGTAAATCACAGACTCGATCCAGAGACTCTGAAGAAAATGGGAAACGAAGAGTATTGT 596
Query 593 CGTGGGAGGTTTGGAGAAGCTCTTGTGTTTTACGAGAGAGCCATTTCAGCTGACCCCAAA 652
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 CGTGGGAGGTTTGGACAAGCTCTCGTGTTTTACGAGAGAGCCATTTCAGCTGACCCCAAA 656
Query 653 ACGCCGACGTATTGGTCTAACAAATCCGCCGCTTTGATCAGTCTCGGTCGTCTTCTTGAA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACGCCGACGTATTGGTCTAACAAATCCGCCGCTTTGATCAGTCTCGGTCGTCTTCTTGAA 716
Query 713 GCTTCTGATGCTTGCGAAGAAGCTTTAAGACTAAACCCAACTTACGAGAGAGCTCATCAG 772
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTTCTGATGCTTGTGAAGAAGCTTTAAGACTAAACCCAACTTACGAGAGAGCTCATCAG 776
Query 773 AGACTAGCTTCCCTCCAACTCAGATTGGGTGAGGTTGAAAAAGCTATGTGTCACTATAAC 832
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 777 AGACTAGCTTCCCTCCAACTCAGATTGGGTGAGGTTGAGAAAGCTTTGTGTCACTATAAT 836
Query 833 GAAGCTGGAAAATATACAGAGACAAAACATATAGAACAAGTTGAAGATGTTATAAAATGC 892
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 837 GAAGCTGGAAAATATACAGAGACAAAACATATTGAACAAGTTGAAGATGTTGTTAAATGC 896
Query 893 TTAAGGAGGTGTGATGAAGCTCGAAGATCAAAGGAATGGAATGTTGCGTTGAAAGAGACT 952
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 897 TTAAGGAGGTGTGACGAAGCTCGAAGATCAAAGGAATGGAATGTTGCATTGAAAGAGACT 956
Query 953 CTTTTTGCGATGTCATATGGAGCCGATTCATCGCCTCGGGTCTATGCGCTCCAAACCGAG 1012
||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||
Sbjct 957 CTTTTTGCGATATCATATGGAGCAGATTCTTCTCCTCGGGTCTATGCACTCCAAACCGAG 1016
Query 1013 GCCTTATTGCATCTGCAGCGACACGAGGAAGCGTACAGCGTGTATCAAAAAGGAACAAAA 1072
|| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1017 GCTTTATTGCATCTTCAGCGACACGAGGAAGCATACAGCGTGTATCAGAAAGGAACAAAA 1076
Query 1073 CGCTTCGAGATCGATAGTTTCATAAAGATTTTTGGTCTTTCCATCACTTCTTACCTCTTA 1132
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1077 CGCTTCGACATCGATAGTTTCATAAAGATTTTTGGTCTTTCCCTCACTTCTTACCTCTTG 1136
Query 1133 ATGGTCGGAGCTCAGGTCTACATTGCAGTAGGAAGATTTGAAGATGCAGTAACGGCATCA 1192
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1137 ATGGTCGGAGCTCAGGTCTACATAGCAGTAGGAAGGTTTGAAGATGCAGTAACGGCGTCA 1196
Query 1193 AGGCAAGCGGCTCGGCTGGATCCGAGCAGCGAAGAAGTAAACGCGGTGGCTAGAAAAGCG 1252
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGGCAAGCGGCTCGACTTGATCCAAGCAGCGAAGAAGTAAACGCGGTGGCTAGAAAAGCG 1256
Query 1253 AGAGCGGTTGCTTCTGCAAGACTGAGCGGAAATTTGCTTTTCAACGCGGCAAAATTTGAA 1312
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1257 AGAGCGGTTGCTTCTGCAAGACTGAGTGGAAATTTGCTTTTCAACGCATCAAAATTTGAA 1316
Query 1313 GGGGCTTGCGTGGTTTACACGGAAGGACTTGAGAAAGATCCCTATAATGCTCTCTTGCTC 1372
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1317 GGGGCTAGCGTGGTTTACACGGAAGGACTTGAGAACGATCCATATAATGCTCTCTTGCTC 1376
Query 1373 TGTAACAGAGCTGCTTCAAGATTCAAGCTTGGTCTGTTCGAGAAAGCCATTGAAGATTGC 1432
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1377 TGTAACAGAGCTGCTTCAAGATTCAAGCTTGATCTGTTCGAGAAAGCTATTGAAGATTGC 1436
Query 1433 ACATTGGCTCTCAGTCTCCAGCCATCGTACCGGAAGGCGAGGCGGCGCAGGGCAGATTCT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACATTGGCTCTCAGTCTCCAGCCATCGTACCGGAAGGCGAGGCGGCGCAGGGCAGATTCT 1496
Query 1493 TATGCCAAGTTGGAGAAATGGCAACACGCGATTCAAGATTATGAGTTGTTGATGATGGAG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TATGCCAAGTTGGAGAAATGGCAACACGCGATTCAAGATTATGAGTTGTTGATGATGGAG 1556
Query 1553 ACACCTGAAGACGAAGAGACTAGAAGAGCCTTGACTGAGGTGAATGTCCGGTTTAAGAAG 1612
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1557 ACACCTGAAGACGAAGAGACTAGAAGAGCCTTAACTGAGGTGAATGTCCGGTTTAAGAAA 1616
Query 1613 CAGACCGGTGGAGATTTCCGGTTTAAAGGAGTCGGCTCGGATAT-GGTTGCGG-TCAATT 1670
||||||||||||||| ||||||||||||||||||||||||| || ||||| || | ||||
Sbjct 1617 CAGACCGGTGGAGATGTCCGGTTTAAAGGAGTCGGCTCGGA-ATTGGTTGTGGCT-AATT 1674
Query 1671 GAAATGGGAGATTTGGCTAAACCGAATTGTATAGTTTTA 1709
||| || ||||||||||||| ||||||||||||||||||
Sbjct 1675 GAAGTGTGAGATTTGGCTAAGCCGAATTGTATAGTTTTA 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5