BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476982
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78150.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1031 0.0
> AT1G78150.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G35780.1). | chr1:29404880-29406374
FORWARD LENGTH=1061
Length=1061
Score = 1031 bits (558), Expect = 0.0
Identities = 629/664 (95%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 351 AGGAAACCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGT 410
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGGAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGT 458
Query 411 AACGAACATGATGATGCATCAGAGCCATTACCGGTTTATCAGCAAGCACTTAGTGGTATA 470
|||||| | |||||||| |||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 459 AACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGCAAGCAGTTAATGGTATA 518
Query 471 AGCCAGATATCATTTGGTGAGGAGGAAGATCTATCTCCTAAAAAGCCGGCTACTGTACCT 530
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 519 AGCCAGATATCATTTGGTGAAGAGGAAAATCTATCTCCTAAAAAGCCGGCTACTGTACCT 578
Query 531 GAAGTCGCCAAACAGCGAGAGCTCAGTGGGACTATGGAGAATGATTCAGCTAATAAGCTG 590
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 579 GAAGTGGCGAAACAGCGAGAGCTCAGTGGGACTATGGAGAATGAATCAGCTAATAAGCT- 637
Query 591 A-AGAAGCAGCTCTCTGATGCTAAGTATAAAGAGATCAGTGGACAGAACATCTTTGCACC 649
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 638 ACAGAAGCAGCTCTCTGATGCTAAATACAAAGAGATCAGTGGACAGAACATCTTTGCACC 697
Query 650 ACCGCCTGAGATCAAACCTAGATCTGGAACAAATCGTGCGTTGGCTCTTAAGGACAATTT 709
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 698 ACCGCCTGAGATCAAACCTCGATCTGGAACTAATCGTGCATTGGCTCTTAAGGACAATTT 757
Query 710 CAACCTCGGAGCTGAATCTCAATCTGCTGGAGAAGACTCATCTGTGAAGACAGCAAAGAA 769
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 758 CAACCTCGGAGCTGAATCTCAAACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAA 817
Query 770 GATTTATGACAAGAAATTCGCAGAACTTTCAGGGAACGACATATTCAAGGGAGCTGCGGC 829
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 818 GATTTATGACAAGAAATTCGCAGAACTTTCAGGAAACGACATATTCAAGGGAGATGCGGC 877
Query 830 ATCATCTTCTGTTGAAAAGCATCTGAGTCAAGCAAAGCTAAAGGAGATAGGAGGAAACAA 889
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 878 GTCATCTAATGTTGAAAAGCATCTGAGTCAAGCGAAGCTAAAGGAGATAGGAGGAAACAA 937
Query 890 CATATTTGCAGATGGGAAAGTAGAGGCAAGAGACTATCTAGGCGGTGTCCGTAAACCACC 949
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 938 CATATTTGCAGATGGGAAAGTAGAAGCAAGAGACTATTTAGGCGGTGTCCGTAAACCACC 997
Query 950 AGGTGGTGAGACAAGCATTGCCCTTGTTTAAAACCCtttttttCGGTAACAACTTAACTC 1009
|||||| ||||||||||| || ||||||||||| | | ||||||||||||||||||||||
Sbjct 998 AGGTGGAGAGACAAGCATCGCACTTGTTTAAAATCATCTTTTTCGGTAACAACTTAACTC 1057
Query 1010 TTTT 1013
||||
Sbjct 1058 TTTT 1061
Score = 329 bits (178), Expect = 3e-89
Identities = 200/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 144 GAGAGACAGACTATGGAGAGAAGTACGCCGGTGAGAAAGCCACATACATCCACTGCAGAT 203
||| || ||| ||||||||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct 105 GAGTGAGAGAGTATGGAGAGAAGTACTCCGGTGAGAAAGCCACACACATCGACCGCAGAT 164
Query 204 CTACTTACTTGGTCGGAGGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCC 263
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CTACTTACTTGGTCGGAAGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCC 224
Query 264 GTTCGTTCCCACCAGCCATCGGATGGGATTAGCAAAGTGGTGTTTGGAGGTCAAGTGACC 323
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 225 GTTCGTTCCCACCAGCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACC 284
Query 324 GATGAAGAAGTTGAGAGCTTGAACCGAAGGA 354
|||||||||||||||||||||||||| ||||
Sbjct 285 GATGAAGAAGTTGAGAGCTTGAACCGCAGGA 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5