BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476984
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-... 2859 0.0
> AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-29410184
FORWARD LENGTH=1953
Length=1953
Score = 2859 bits (1548), Expect = 0.0
Identities = 1833/1969 (93%), Gaps = 25/1969 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAGTTTCGTGAAGCTTCTTCGGTCTCTTCGTCTCCTTCGACTCCACTACGAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAGTTTCGTGAAGCTTCTTCGGTCTCTTCGTCTCCTTCGACTCCACTACGAACA 60
Query 61 CCGTTACATTCTCCAAACCTCTTTCACGGAGATTTCTCCATTAGCAACAGATTCTCTTTC 120
|| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 61 CCCTTACATTCTCCAAACCTCTTTAATGGAGATTTCTCCGTTAGCAACAGATTCTCTTTC 120
Query 121 AACTCTTCATCTGATTATTCTTTATCAAGTTCTTTCTCTAATGGATTCTGTTCTCCTGAA 180
|| |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 121 AAGTCTTCATCAGACTATTCTTTATCAAGTTCCTTCTCTAATGGACTCTGTTCTCCTGAA 180
Query 181 GATAGTTCTTCTCCGTTCGCTTCTCCTCCGTTTAGCGGGATCATTCCTAAGCTA-AATCA 239
||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||
Sbjct 181 GATAGTTCTTCTCCGTTTTCTTCTCCTCCGTTTAACGGGATCATTCCTAAGC-ACAATCA 239
Query 240 CACTTCACCAGTCTCTTTTCATAACCATAATAATGATTTATTGTTTCACAAGGATCATGA 299
||||||| || || | | || | | | | ||||| ||||||| ||||||||||||
Sbjct 240 CACTTCATCA-TCACCTGTC-T---C-T--T-TTGATTCATTGTTTTTCAAGGATCATGA 290
Query 300 AAAGAGTCATGTTAATGGTGA-TGATGATTTAGGTTTGTGTGAAGATCTCTACCGTATGA 358
||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 291 AAAGAGTCATGTTAATGGT-ACTGATGATTTAGGTTTGTGTGAAGATCTCTATCGTATGA 349
Query 359 ATATCAAGGAGGATGTTGAAGAAGATCAAGTACGTTACGCACGAACTGAGACTC---ACG 415
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
Sbjct 350 ATATCAAGGAGGATGTTGAAGAAGATCAAATACGTTACGCACGAACCGAGACTCTTAAAG 409
Query 416 GTTCGATTCCTAAGTCTGATCACACCGACTTCACTCTTGATCCACTCTACAACTTTTCAC 475
| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 410 ATCCTCTTCCTAAGTCTGATCACACTGACTTCACTCCAGATCCACTCTACAACTTTTCAC 469
Query 476 CTAAACACTATGAATCTAACAATGGTGGATTTGTGTCTGGAGGCTTTCCATGTGGATTCT 535
|||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct 470 CTAAACACTATGAACCTAGCAATGGTGGATTTGTCTCTGGAGGCTTTCCATATGGATTCT 529
Query 536 TTCGTCCAACAAAAGAGTCTAGTGTTAACCAGCCATGTGACTCGTGGTCTGGATTCGATC 595
|||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 530 TTCGTCCACCAAAGGAGTCTAGTATTAACCAGTCATGTGCCTCGTGGTCTGGATTCGATC 589
Query 596 AAAGCAAAAATGTCGACAAGAGAAACATGTTTGGGAATAATCCTCAACAAATTGGATGGC 655
|||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 590 AAAGCAAAAATGACGACAAGAGAAACATGTTTGGGAACAATCCTCAACAATTTGGATGGC 649
Query 656 CTAGCTACTCAAGCAGTAATGGTGGCACTAGTCCTTACAACAATGGTCAGGAGATTTTCG 715
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 650 CTAGCTACTCAAGCAGTAATAGTGGTACTAGTCCTTACAACAATGGTCAGGAGATTTTCG 709
Query 716 GAAATCGAGTTGGAATGAGAGAGTATTCAGCTTACTCGCCGCCACAACAACAACCCGATA 775
|||||||| |||||||||||||| |||||||||||||| || | ||| |||||||| |
Sbjct 710 AAAATCGAGGCGGAATGAGAGAGTACTCAGCTTACTCGCC-CC-C-ACATCAACCCGA-A 765
Query 776 -TTTCGTATAATCATCAAAGTTACAGAACAACAACATCAGACATCTTACCATTTTTCTGC 834
|||| ||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 766 GTTTCTTATAAGCATCAAAATTACAGAACAACAACATCAGACATATTACCATTGTTCTGC 825
Query 835 CAAGGAACTCAAGCT-CCTATGGTTTCAAAATGGTCTGAGCCATTTAGCGCTGATGATAG 893
||| ||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 826 CAACGAACTCAAG-TCCCTATGGTTTCAAAATGCTCTGAGCCATTTAGCTCTGATGAGAG 884
Query 894 TTTCTTCATGAATGGGAAAAGC-TTGGATCATCAGAGAAGCAGTACTCGAGCAGTGATGT 952
||||||||||||||| |||||| || |||||||||||||||| |||||||||| ||||||
Sbjct 885 TTTCTTCATGAATGGTAAAAGCATT-GATCATCAGAGAAGCAATACTCGAGCATTGATGT 943
Query 953 CTGATCATGGGAGTACTACAGAGATATGTCATCCGAGTCTGCCTAACATGTGTGACATTC 1012
|| || |||| | | |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 944 CTAATAATGGAAATCCTACGGAGATATGTCATCCAAGTCTGCCTAACATGTGTGACATTC 1003
Query 1013 AAGGATATGTATACTTAATGGCTAAAGATCAACACGGATGTCGATTCTTGCAGAGGATTT 1072
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AAGGATATGTTTACTTAATGGCTAAAGATCAACACGGATGTCGATTCTTGCAGAGGATTT 1063
Query 1073 TCGATGAAGGAACTTCCGCTGACGCAATGATCATATTCAATGAAGTTATTGCTCATGTCG 1132
|||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1064 TCGATGAAGGAACTTCTGTTGACGCGATGATTATATTCAATGAAGTTATTGCTCATGTTG 1123
Query 1133 TTGAGCTTATGATGGATCCTTTTGGGAATTACCTGATGCAGAAACTCTTAGATGTTTGTA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TTGAGCTTATGATGGATCCTTTTGGGAATTACCTGATGCAGAAACTCTTAGATGTTTGTA 1183
Query 1193 CTGAAGAACAGAGGACGCAAATCGTGCTCGTGGCAACCGCGGAGCCTGGTCAACTTATCC 1252
|||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1184 CTGAAGAACAGAGGACACAGATCGTGCTCGTGGCAACTGAGGAGCCTGGTCAACTTATCC 1243
Query 1253 GGATATCTCTCAATGCATACGGTACTCGGGTTGTCCAAAGATTAGTGGAAACAATCAGAA 1312
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1244 GGATATCTCTCAATGCATACGGTACTCGAGTTGTCCAAAGATTAGTGGAAACAATCAGAA 1303
Query 1313 CCGGAAAACAGATTTCTCTGGTGAAATCGGCATTGAGACCCGGTTTTCTTGATTTGATCA 1372
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1304 GCGGAAAACAGATTTCTCTGGTGAAATTGGCTTTGAGACCCGGTTTTCTTGATTTGATCA 1363
Query 1373 AAGATTTAAATGGCAACCATGTGATTCAACGTTGCTTGCAATGCCTAAGCACTGAAGATA 1432
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1364 AAGATTTAAATGGAAACCATGTGATTCAACGTTGCTTGCAATGCCTTAGCACTGAAGATA 1423
Query 1433 ACAAGTTTATCTTTGATGCGGCGACAAAGTTCTGCACTGAAATCGCAACACATAGACATG 1492
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1424 ACAAGTTTATCTTTGACGCGGCGACAAAGTTCTGCACTGAAATCGCAACACATCGACATG 1483
Query 1493 GATGTTGTGTGCTTCAAAAATGCATTGCTTACTCAATGAGACAACAACGAGAGAAGCTGA 1552
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1484 GATGTTGTGTGCTACAAAAATGCATTGCTTATTCAATGAGACAACAACGAGAGAAACTGA 1543
Query 1553 TAGCTGAAATCTCTAGAAACAGCCTCCTCCTTGCTCAAGACCCCTTTGGGAACTACGCAG 1612
| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1544 TCGCTGAGATCTCTAGAAACAGTCTCCTTCTTGCTCAAGACCCCTTTGGGAACTACGCAG 1603
Query 1613 TCCAATTCGTTATAGAACTGAGGATTCCTTCTGCGGTGGCGATGATGCTGGCTCAGTTAA 1672
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1604 TCCAATTTGTTATAGAACTAAGGATTCCTTCTGCGGTGGCGATGATGCTGGCTCAATTAA 1663
Query 1673 AAGGGCATTACGTTCAGCTTTCAATGCAGAAATTCAGTAGCCACATGGTCGAAAGATGTT 1732
|||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 1664 AAGGGCATTACGTTCAGCTTTCGATGCAGAAATTCAGTAGCCACATGGTGGAACGATGTC 1723
Query 1733 TGATGCATTGTCCCGAGAGTCGTCCACAAATTGTGCGTGAGCTCATCTCTGTTCCTCACT 1792
| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1724 TCATGCATTGTCCAGAGAGTCGTCCACAAATCGTGCGTGAGCTCGTCTCTGTTCCTCACT 1783
Query 1793 TTGATCAGCTTCTTCAAGACCCTTACGCAAATTTTGTCATCCAAGCCGCTCTTGCCGCCA 1852
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1784 TTGATCAGCTTCTTCAAGACCCTTACGCAAATTTCGTCATCCAAGCCGCTCTTGCTGCCA 1843
Query 1853 CAAAGGGTCCAATTCATGCTTCACTTGTGGAAGTCATAAGGCCACATTCGATTCTACGTA 1912
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1844 CAAAGGGTCCACTTCATGCTTCACTAGTGGAAGTCATAAGGCCACATTCGATTCTACGTA 1903
Query 1913 ATAATCCTTATTGCAAGAGGATTTTTTCGAGGAATCTACTGAAGAAGTG 1961
||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1904 ATAATCCTTATTGCAAGAGGATTTTCTCGAGGAATCTATTGAAGAAGTG 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5