BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476986
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78180.1 | Symbols: | Mitochondrial substrate carrier famil... 1975 0.0
> AT1G78180.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:29416913-29418640 FORWARD LENGTH=1378
Length=1378
Score = 1975 bits (1069), Expect = 0.0
Identities = 1203/1268 (95%), Gaps = 8/1268 (1%)
Strand=Plus/Plus
Query 1 ATCCAAATGTCAGGACTCGATATCTATCCTCACGAT-C-T-TTCTTCTTCTTC-A--AGC 54
|||||||||||||||||||||||||||||||||||| | | |||||||||||| | |||
Sbjct 1 ATCCAAATGTCAGGACTCGATATCTATCCTCACGATCCTTCTTCTTCTTCTTCGACCAGC 60
Query 55 TCTATCGATCTATCCAATGAAGCTTTCTTCAGCACCGGTGGTTTGTTTCTCGAACCACCA 114
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCTATCGATCTATCCAATGAAGCTTTCTTCAGCACCGGTGGTCTGTTTCTCGAACCACCA 120
Query 115 GGCAATTCCTCTTCTTTCTTCGACTCGATCTCCTCCAAATGCTCCGACTTC-GAACCGGT 173
||| ||||||||| ||||||||||| ||||||||||||||||||||| || || || |
Sbjct 121 GGCGTTTCCTCTTCCTTCTTCGACTCTATCTCCTCCAAATGCTCCGAC-TCAGAGCCACT 179
Query 174 GCATTTTCCCGGTTACTGGAGAAACAAAACTCGTCTTCGCTCAAGTAAGACCTTGATGTT 233
|||||| ||||||||||||||||||||||| ||||| ||||| |||||| ||| |||||
Sbjct 180 GCATTTCCCCGGTTACTGGAGAAACAAAACCCGTCTCCGCTCCGGTAAGAACTTTATGTT 239
Query 234 TCTGTCCGTGAGCTTGAGTAAAGACAGATCTAAGCAGCAATGCAAAAATGCTTTGGCGCA 293
|||||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct 240 CCTGTCCGTGAGCTTGAGTAAAGACAGATCTGAGCAGCAATGTAAGAAGGCTTTGGCGCA 299
Query 294 AAACGGCAAAATTCCCGGCAAAGATATTGGAAAACGAAGTGTTATCGGTGGAGGGAGGAG 353
||||| | ||||||||||||| |||| | |||||||||||||||||||||| | ||||||
Sbjct 300 AAACGACGAAATTCCCGGCAAGGATAATCGAAAACGAAGTGTTATCGGTGGCGTGAGGAG 359
Query 354 ACGCGGGACCATGAACACAAGGAAGCATCTCTGGGCTGGTGCTGTAGCTGCCATGGTTTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGCGGGACCATGAACACAAGGAAGCATCTCTGGGCTGGTGCTGTAGCTGCCATGGTTTC 419
Query 414 AAAAACATTCTTAGCTCCACTTGAGAGACTAAAGCTTGAATATACAGTTCGTGGTGAACA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAAACATTCTTAGCTCCACTTGAGAGACTAAAGCTTGAATATACAGTTCGTGGTGAACA 479
Query 474 GAGGAACTTGTTGGTGGTCGCTAAGTCAATTGCCACTACACAGGGCTTGACTGGATTCTG 533
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GAGGAACTTGTTGGTGGTTGCTAAGTCAATTGCAACTACACAGGGCTTGACTGGATTCTG 539
Query 534 GAAAGGTAATTTGCTCAATGTTCTCCGAACTGCTCCTTTCAAAGCCGTCAATTTTTGTGC 593
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GAAAGGTAATTTGCTCAATGTTCTTCGAACTGCTCCTTTCAAAGCCGTCAATTTTTGTGC 599
Query 594 CTACGATACCTATAGAAAGCAATTGCTTAAACTCGCTGGGAATCAAGAAGCAACCAACTT 653
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CTATGATACCTATAGAAAGCAATTGCTTAAAATCGCTGGGAATCAAGAAGCAACCAACTT 659
Query 654 TGAAAGATTCGTTGCTGGAGCTGCTGCTGGGATTACTGCTACTGTGCTCTGCTTGCCACT 713
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAAAGATTCGTTGCTGGTGCCGCTGCTGGGATTACTGCTACTGTGCTCTGCTTGCCACT 719
Query 714 CGACACTATACGAACCAAACTAGTGGCTCGGGGTGGAGAAGCCTTGGGTGGAATCGCAGG 773
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 720 CGACACTATACGAACCAAACTAGTGGCTCGGGGTGGAGAAGCCTTGGGGGGAATCGGAGG 779
Query 774 AGCTTTTCAGTATATGATCCAAACCGAAGGGTTGTTGTCACTTTACAAGGGTCTAGTCCC 833
|||||||| ||||||||||||||| ||||||||||| || || |||||||||||||| ||
Sbjct 780 AGCTTTTCGGTATATGATCCAAACAGAAGGGTTGTTCTCCCTCTACAAGGGTCTAGTGCC 839
Query 834 GTCCATAGCAAGCATGGCTCTGTCTGGTGCAGTTTTCTATGGCGTTTACGACATCCTTAA 893
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GTCCATAGCAAGCATGGCTCTGTCCGGTGCAGTTTTCTATGGCGTTTACGACATCCTTAA 899
Query 894 ATCATCCTATCTGCATACACCAGAAGGCCGGAAAAGACTGATAGACATGAAGCAGCAGGG 953
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCATCGTTTCTGCATACACCAGAAGGCCGGAAAAGACTGATAGACATGAAGCAGCAGGG 959
Query 954 ACATGAACTCAATGCTCTAGACCGGCTCGAGTTAGGACCCATCAGAACTCTCATGTACGG 1013
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 ACAAGAACTCAATGCTCTAGACAGGCTCGAGTTAGGACCCATCAGAACTCTCATGTACGG 1019
Query 1014 TGCTATCGCAGGTGCTTGTACTGAAGTGGCCACTTATCCTTTTGAAGTAGTGAGACGACA 1073
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1020 TGCTATAGCAGGTGCTTGTACTGAAGTAGCCACTTATCCTTTCGAAGTAGTGAGACGACA 1079
Query 1074 GCTTCAGATGCAGATGGGTAAAAACAAGCTCAATGCTTTAGCTATGGGATTCAGTATCAT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GCTTCAGATGCAGATGGGTAAAAACAAGCTCAATGCTTTAGCTATGGGATTCAATATCAT 1139
Query 1134 TGAGAGAGGAGGCCTCCCAGCTTTATACGCTGGACTTTTACCTAGCTTGCTCCAGGTATT 1193
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGAAAGAGGAGGGATCCCAGCTTTATACGCTGGACTTTTACCTAGCTTGCTCCAGGTATT 1199
Query 1194 GCCTTCGGCTTCAATAAGTTACTTTGTCTACGAGTGTATGAAGATAGTGCTTAAAGTAGA 1253
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GCCTTCGGCTTCAATAAGTTACTTTGTCTACGAGTGTATGAAGATAGTACTTAAAGTAGA 1259
Query 1254 ATGACAAG 1261
|| |||||
Sbjct 1260 ATAACAAG 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5