BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476988
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78200.1 | Symbols: | Protein phosphatase 2C family protein... 1635 0.0
> AT1G78200.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:29420355-29421864 FORWARD LENGTH=1194
Length=1194
Score = 1635 bits (885), Expect = 0.0
Identities = 1011/1070 (94%), Gaps = 15/1070 (1%)
Strand=Plus/Plus
Query 119 AATTCAGAATCCAAATGCCCAAGATCTGCTGTTCTCGTTCCGCTACACAAGTTGTGGTAG 178
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 AATTCAGAAT-CAAATGCCCAAGATCTGCTGCTCTCGTTCCGCTACACAAGTTGTGGTAG 174
Query 179 CACAAAAATCAAACTCGGGTAAAGGGAGAAACAGTGAAGGAAGAATCAAGTATGGATTTA 238
||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 175 CACAAAAATCAAACTCGGGTAAAGGAAGAAACGGTGAAGGAGGAATCAAGTATGGATTTA 234
Query 239 GTTTGATAAAGGGGAAATCTGACCATTCAATGGAGGATTATCATGTTGCTAAGTTTATGA 298
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 235 GTTTGATAAAAGGGAAATCTAACCATTCAATGGAGGATTATCATGTTGCTAAGTTTACCA 294
Query 299 ATTTCAATGGCAATGAATTGGGGCTTTTTGCTATCTTTGATGGTCATAAAGGTGAT-AGT 357
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 295 ATTTCAATGGCAATGAATTGGGGCTTTTTGCAATCTTTGATGGTCATAAAGGTGATCA-T 353
Query 358 GTAGCTGCTTATTTGCAGAAACACCTCTTCTCTAATATCCTCAAAGATGGAGAGTTCTTG 417
|| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 354 GTTGCTGCTTATCTGCAGAAACATCTCTTCTCTAATATCCTTAAAGATGGAGAGTTCTTG 413
Query 418 GTTGATCCTCGAAGAGCAATTGCGAAAGCTTATGAGAATACAGACCAAATGATTTTAGCA 477
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 414 GTTGATCCTCGAAGAGCAATTGCGAAAGCTTATGAGAATACAGATCAAAAGATTTTAGCA 473
Query 478 GATAATAGAACGGATTTAGAGAGTGGCGGTTCGACTGCTGTGACTGCGATTTTGATCAAT 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 474 GATAATAGAACGGATTTAGAGAGTGGTGGTTCGACTGCTGTGACTGCGATTTTGATCAAT 533
Query 538 GGGAAAGTTTTGTGGGTAGCTAATGTTGGCGATTCGCGTGCTATTGTTTCTAGTCGAGGT 597
||||||| ||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 534 GGGAAAGCTTTGTGGATAGCTAATGTTGGTGATTCACGAGCTATTGTTTCTAGTCGAGGT 593
Query 598 AAAGCAAAACAGATGAGTGTAGATCATGATCCTGATGATGATACTGAGAGGAGTATGATT 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 AAAGCAAAACAGATGAGTGTTGATCATGATCCTGATGATGATACTGAGAGGAGTATGATT 653
Query 658 GAGAGTAAAGGTGGATTTGTGACCAACAGGCCAGGTGATGTTCCTCGAGTGAACGGTTTG 717
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 654 GAGAGTAAAGGTGGATTTGTGACCAACAGACCAGGTGATGTTCCTCGAGTGAACGGTTTG 713
Query 718 TTAGCTGTCTCTCGTGTCTTTGGTGACAAAAACCTCAAAGCATATTTGAACTCAGAGCCT 777
||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 714 TTAGCGGTCTCTCGTGTCTTTGGAGATAAAAACCTTAAAGCATATTTGAACTCAGAGCCT 773
Query 778 GACATTAAGGATGTAACCATTGATAGTCACACAGATTTTCTTATTATGGCTAGTGACGGT 837
|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 GAGATTAAGGACGTAACCATTGATAGTCACACAGATTTTCTTATTCTGGCTAGTGACGGT 833
Query 838 ATTTCGAAGGTGATGTCAAACCAAGAAGCAGTTGACATAGCTAAGAAGTTGAAAGATCCA 897
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 834 ATTTCGAAGGTGATGTCAAACCAAGAAGCAGTTGATGTAGCTAAGAAGTTGAAAGATCCA 893
Query 898 AAGGAAGCAGCGAGGCAAGTAGTTGCTGAAGCATTGAAAAGAAACAGTAAGGATGACATA 957
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 AAGGAAGCGGCGAGGCAAGTAGTTGCTGAAGCATTGAAAAGAAACAGCAAGGATGACATA 953
Query 958 TCTTGCATTGTTGTCCGGTTTAGATGATAACCAAGAAGACGCAGCTTATATTGGATTTGG 1017
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 954 TCTTGCATTGTTGTCCGGTTTAGATGATAACCAAGAAGACTCAGCTTATATTGGATTTGG 1013
Query 1018 AGCTTGCTTTTGCTTCACCAAGATTATTTTGGGGTCCGGTTTAGTTCGAT-CTGGTTCTT 1076
||||| |||| ||||||||| |||| |||||||||||||||||||| ||| |||| ||||
Sbjct 1014 AGCTTCCTTT-GCTTCACCATGATTCTTTTGGGGTCCGGTTTAGTTTGATTCTGGGTCTT 1072
Query 1077 CGTTACTTGTGCATTTTCAAGAACA-GCAGTTT-AATAGGAATATTATTATATTATACTA 1134
|||||||||||||||| ||||||| | ||||| ||||||| |||||| |||||| |||
Sbjct 1073 GGTTACTTGTGCATTTTTAAGAACATG-AGTTTGAATAGGACTATTAT-ATATTA--CTA 1128
Query 1135 GTTTGACAAACCAGATGAGTTATATCATA-AAATTTACATGAAAAGAATA 1183
|||||||||||||||| | || ||||||| ||||| ||||||||||||||
Sbjct 1129 GTTTGACAAACCAGAT-ATTT-TATCATATAAATT-ACATGAAAAGAATA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5