BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476991
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78230.1 | Symbols: | Outer arm dynein light chain 1 protei... 2820 0.0
> AT1G78230.1 | Symbols: | Outer arm dynein light chain 1 protein
| chr1:29430225-29432764 FORWARD LENGTH=2295
Length=2295
Score = 2820 bits (1527), Expect = 0.0
Identities = 1833/1978 (93%), Gaps = 32/1978 (2%)
Strand=Plus/Plus
Query 100 AAAACAAGTAG-GGCAATCTTTAACTCTGGCCGACACATCAACGGATTCGGCGGTGGTCG 158
||||||||| | ||| |||||||||||||||||||||||| |||||||| | |||||||
Sbjct 143 AAAACAAGT-GCGGCTATCTTTAACTCTGGCCGACACATCGGCGGATTCGACTGTGGTCG 201
Query 159 GATCAAGAAGTGCTTCCtttttttCCGGCGTCATTTCTTCTTTTAAATTCATCGATTTGG 218
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 202 GATCAAGAAGTGCTTCCTTTTTTTCCGGCGTCGTTTCTTCTTTTATATTCATCGATTTGG 261
Query 219 TGTTCTCGCAACTTCCAATAGATTACGGCTAATTTAAAAAATAAAATGAAGATATTACCA 278
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 262 TGCTCTCGCAACTTCCAATAGATTACGGCTAATTT-----CTAAAATGAAGATATTACCA 316
Query 279 TGCTTTGCTGGATTGATCCGTAGAAAGAAAAATAAGGGGAATTCAAAACCTCTGCCTCCG 338
||| || |||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 317 TGC-TT--TGGATTTATCCGTAGAAAGAAAAATAAGGGGAATTCAAAA------CCTCAG 367
Query 339 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTCTCGAGAATGAT 398
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 368 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTTTGGAGAATGAT 427
Query 399 GAGCCTAACAACAAGGGCAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 458
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAGCCTAACAACAAGGACAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 487
Query 459 GGCGACAAGGACTCAACGAACCGTGAGTTTCCTGAATTCCAAGTTCACGAACGAGCCGTT 518
| ||| ||||| |||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 488 GACGATAAGGATTCAACGAACCGTGAGTTTTCTAAATTCCACGTTCACGAACGAGCCGTT 547
Query 519 GAATCTCTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGTAAACGGCGATG---ATGAC 575
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 548 GAATCTGTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGAAAACGGCGATGACAATGAC 607
Query 576 GATGACGAAGGAGGTCACGTCAGCGATCCCGGATTAGGCAGAGCCACGGCTTGGGTGACT 635
|| || ||||||||||||||||| ||||| |||||||||| | | ||||||||||||||
Sbjct 608 GAGGATGAAGGAGGTCACGTCAGTGATCCTGGATTAGGCAAAACTACGGCTTGGGTGACG 667
Query 636 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTCAATGGCCGGTTCCATGGT 695
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTTAATGGCCGGTTCCATGGT 727
Query 696 TCTGATCTCCATGACCTGAGAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCCCAT 755
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 728 TCTGATCTCCATGACCTGAAAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCTCAT 787
Query 756 AGAAGTGCAGATAGAGTGATGCTCAAGAAACACTCGTCGATGCAGATACTTCCCTC-GGG 814
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 788 AGAAGTGCAGATAGAGTGATGCTCAAGAAACATTCGTCGATGCAGATACTTCCCTCTGGG 847
Query 815 TAGCCGGCGGCTCTGGTGGAAACTGTTCCTCTGGAGCCATAGGAACCTTCACAAACACCG 874
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 848 -AGCCGGCGGCTCTGGTGGAAGTTGTTCCTATGGAGCCATAGGAACCTTCACAAACACCG 906
Query 875 TGTTTCCCTAAAGTCACAGCCTTTAAACAAGAACCATCAGTCTGGATACACCTCTGACTT 934
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 TGTCTCGCTAAAGTCACAGCCTTTAAACAAGAACCAGCAGTCTGGATACACCTCTGACTT 966
Query 935 TGCTGAGCACAACCAATCGAGCCATGAAGAAGAATCTACAAACAATTGCGCCGATTTCAC 994
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 967 TGCTGAGCACAACCAATCCAGCCATGAAGAAGAATCTACAAACTATTGCGCTGATTTCAC 1026
Query 995 CAACCAATCATCCAACTTGTGGCCTCGTCATAATCAGTGGGTAGCGTTCTCTGCCGAATC 1054
|||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 1027 CAACCAGTCATCAAACTTGTGGCCTCATCATAATCAGTGGGTCGCGTTCTCTGCCGAGTC 1086
Query 1055 ATCTTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTCGATGTTGAAACCGCCGCAGT 1114
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||
Sbjct 1087 CTCGTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTGGATGTCGAAACCG-TG--GT 1143
Query 1115 ACCCA-TAAACGAGGATAAAGACGTCTTGGCCAGCTTCCCAACCTCTCCCAATACAGAGA 1173
||| | ||||||||||| || |||||||||| ||||||||||||||| ||||| ||||
Sbjct 1144 -TCCAGTGAACGAGGATAAGGATGTCTTGGCCATCTTCCCAACCTCTCCTAATACTGAGA 1202
Query 1174 GATCACCCTTAGGAAATGTGATTCAGTCCGGAAATGTCTCAGAGGCTATAGTGCACGCAA 1233
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1203 GATCACCCTTAGGAAATGTGGTTCAGTCCGGAAACGTCTCAGAGGCTATAGTGCACGCAA 1262
Query 1234 ATAGCCTTATCCAGTCTATGAGCAAATCCTCGAGTGTGGCTCACATATCGAGTATCGGCT 1293
|||||||||| || || |||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 1263 ATAGCCTTATTCAATCGCTGAGCAAATCATCGAGCGTGGCTCACATCTCGAGCATCGGCT 1322
Query 1294 TGAAAGCTATCCCGAGCATCTCACATTTTACAAGCCTCAAGTCGATTGATCTTTCAAACA 1353
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1323 TGAAAGCTATCCCGAGCATCTCACATTTTACCAGCCTCAAGTCGATTGATCTATCAAACA 1382
Query 1354 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCAAAGGGCCTGCACGCGCTGAATCTTT 1413
|||||||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||
Sbjct 1383 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCTAAGGGCCTCCACGCGTTGAACCTTT 1442
Query 1414 CCAAGAACAAGATCAGTGTTATCGAAGGACTGAGAGATTTGACACGCCTAAGAGTACTCG 1473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1443 CCAAGAACAAGATCAGTGTTATCGAAGGACTAAGAGATTTGACACGCCTAAGAGTACTCG 1502
Query 1474 ATCTCAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1533
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ATCTAAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1562
Query 1534 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1622
Query 1594 AACTTATCGTTCTTGATCTTAGCTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1653
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1623 AACTTATTGTTCTTGATCTTAGTTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1682
Query 1654 TTGTTGCCAACTACAACTCTCTTGTCGCTTTGAACATCCTCGGAAACCCGATTCAGAGTA 1713
|||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 1683 TTGTAGCCAACTACAACTCTCTCGTTGCTTTGAACATCCTCGGAAACCCGATCCAGAACA 1742
Query 1714 ACGTAGGCGAGGACCAGCTACGCAAGACCGTCTCCAGCCTTCTCCCTAAGCTAGTTTATC 1773
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1743 ATGTAGGCGAGGACCAGCTACGCAAGACCGTTTCCAGCCTTCTCCCTAAGCTAGTTTACC 1802
Query 1774 TTAACAAGCAGCTCATCAAGCCACAACGAGCCAGGGAAGTACTCAAAGATAGTGTAGCGA 1833
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1803 ATAACAAGCAGCTCATTAAGCCACAACGAGCCAGGGAAGTTCTCAAAGATAGTGTAGCGA 1862
Query 1834 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAAA 1893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1863 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAGA 1922
Query 1894 AAGTTGTGGGATCAGCCTCCCCTAGCGTTCAACACCAAGGCCGCATTGCAAGAGGACGTG 1953
||||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 1923 GTGTTGTTGGATCAGCCTCCCCTAGCGTTCACCACCGAGGCCACATTGCAAAAGGACGTG 1982
Query 1954 GTTCCAAAAACCGAAGCCAACATCAGCTAAGAAAAACTTCAGCTGCAGAGTCACCATTAC 2013
| ||||||||| ||||||||| ||| |||||||||||||||||||||| | | |||| ||
Sbjct 1983 GATCCAAAAACAGAAGCCAACGTCAACTAAGAAAAACTTCAGCTGCAGGGACGCCATCAC 2042
Query 2014 ACTGACAttttttttCTTT-TCTT-ATTTT-ATGAATTGGCCAATGCAAATTGCAAAG 2068
| ||| ||| || || ||| | || | | | |||||||||||||||||||||||||||
Sbjct 2043 ATTGA-ATTGTTCTT-TTTGT-TTGAATCTCATGAATTGGCCAATGCAAATTGCAAAG 2097
Score = 95.3 bits (51), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACCCGTCCATTTCATTCTTCCTCATCTTCT 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACACGTCCATTTCATTCATCCTCTTCTTCT 60
Query 61 ATCCTCT 67
|| |||
Sbjct 61 -TCTTCT 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104818737960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5