BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476993
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2058 0.0
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 588 6e-167
> AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29446985-29450515 FORWARD LENGTH=1530
Length=1530
Score = 2058 bits (1114), Expect = 0.0
Identities = 1362/1476 (92%), Gaps = 39/1476 (3%)
Strand=Plus/Plus
Query 1 tctctcttctctcttctctc-tATCTACGTATGTGTAGGGTCGAAGACAA-TACGACGCC 58
||||||||| |||||||||| | ||| | ||||||||||||||||||||| ||||| ||
Sbjct 17 TCTCTCTTCCCTCTTCTCTCTTCTCTTCATATGTGTAGGGTCGAAGACAAGAACGACACC 76
Query 59 GTTTCAAGGGTTGCAATTTGCAACCTTTTGATTGGTCTCTCTTCTCTTTGCCCAACCAAA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GTTTCAAGGGTTGCAATTTGCAACCTTTTGATTGGTCTCTCTTCTCTTTGCCCAACCAAA 136
Query 119 AACAACCTTTGATGATATAAAGATCAGCCAACTTTGTCCATTCCAAATCTCt-ttttttt 177
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 137 AACAACCTTTGATGATATAAAGATCAGCCAACTTTGTCCATCCCAATTCTCTCTTTTTTT 196
Query 178 c------ccctaatgttttagacaagcacatttttccataattatttatttattcaattt 231
|||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 197 TTTGTTTCCCTAATGTTTTAGACAAACACAATTTTCCATAATTATTTATTTATTCAATTT 256
Query 232 t-atctgtttttggggtttttatatcatcatcatcatcGGAAGACTTCCATATTTGTTAA 290
| ||||||||||||| || |||| ||||||||||| ||| |||| |||||||||||||
Sbjct 257 TTATCTGTTTTTGGG-TTAC-ATAT-ATCATCATCATTGGA-GACTGCCATATTTGTTAA 312
Query 291 TCGTGATATTCATTAAA-TAAAATGTCTCAAACGAGCTATTATCGATCACCGTCCGGAGA 349
|||||||||| ||| || ||| |||||||||| ||||| || |||||||||| ||||||
Sbjct 313 TCGTGATATTAATTTAACTAA--TGTCTCAAACAAGCTACTACCGATCACCGTTCGGAGA 370
Query 350 CACGACTTACACCAAAGTGTTCGTTGGAGGATTAGCATGGGAAACTCCTACCGACGAAAT 409
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 371 CACGACTTACACCAAAGTGTTCGTCGGAGGATTAGCGTGGGAAACTCCTACCGACGAAAT 430
Query 410 GCGTCGTTACTTCGATCAGTTCGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAAAA 469
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 431 GCGTCGTTACTTCGAACAGTTCGGAGAGATTCTTGAAGCCGTCATCATCACCGATAAAAA 490
Query 470 CACCGGCAAATCTAAAGGCTATGGATTCGTGACGTTTCGGGAGGCGGATTCAGCCACGAG 529
||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 491 CACCGGCAAGTCTAAAGGCTACGGATTCGTGACGTTTCGGGAGTCGGACTCAGCCACGAG 550
Query 530 AGCCGTCGCTGATCCAAATCCGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCGTC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 551 AGCCGTCGCTGATCCAAATCCGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCATC 610
Query 590 TTTTGGACGGCCTCGACCATCGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTTTGGACGGCCTCGACCATCGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCA 670
Query 650 GTACCAAAGTGGAGGACCATCAGGTTATACCGGGATGGCTGCACAACTGCCACCGGCTGC 709
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 671 GTACCAAAGTGGAGGACCATCAACCTATACCGGGATGGCTGCACCACTGCCACCGGCTGC 730
Query 710 AGCTCCCCAGCTCATGTATCCGTCCTACGGGTACACCTATAACCCTGATCAATTTGGGTA 769
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 731 AGCTCCCCAGCTCATGTATCCGTCGTACGGGTACACCTATAACCCTGATCAATTTGGGTA 790
Query 770 CCACCAAGCACTGTACAACACACAGTTGCAACAAGCACAATACTATCAGCAGCAACAGCA 829
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 791 CCACCAAGCATTGTACAACACACAGTTGCAACAAGCACAATACTATCAGCAGCAGCAACA 850
Query 830 GCTTTATGGAGGAGGAGCAACATCACCATCATCATCAGGA--A-CTATCATGCCTTCTCC 886
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 851 GCTTTATGGAGGAGGAGCAACATCACCATCATCATCAGGAGCAACCATCATGCCTTCTCC 910
Query 887 ATACTATTATGGCTATTCTCTTCAAGCTCCTAGAGTACcataccaacatcatcatcatca 946
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 911 ATACTATTATGGCTATTCTCTTCAAGCTCCTAGAGTACCATACCAACA-C--CATCATCA 967
Query 947 tcttcctcaaccatataatcctcaacaacatcatca--a-cGGTTTTCTTCTCCTTCTTT 1003
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 968 TCTTCCTCAACCATATAATCCTCAACAACATCATCATCAACGGTTTTCTTCTCCTTCTTT 1027
Query 1004 CCTCGTTTACCCATCCAATTCCTCTTTTACCCCTTCTCTCCAAGGACTACTCTCTTCTTC 1063
|||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||
Sbjct 1028 CCTCGTTTACCCATCCAATTCCTCTTTTGCCCCTCCTCTCCAAGGAGTACTATCTTCTTC 1087
Query 1064 CACCGATTCTGAAGCAGTACCACAACAAATACCAGCTACAGAAGGCGAAGCAAC---GAC 1120
|||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 1088 CACCGAATCTGAAGCAGTACCACAACAAGTACCAGCTGCAGAAGGCGAAGCAACAACGAC 1147
Query 1121 TGCTCCTGAAATTACAACCATCAACACCAAAGAACCTATTTCTTCTTGATCTTTCTTTCA 1180
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1148 TGCTCCTGAAATCACAACAAGCAACACCAAAGAACCTATTTCTTCTTGATCTCTCTCTCA 1207
Query 1181 TTTCCCAATTTGTACAATCTTCACATTTTTAtctctctctctctctctGAAAGAACCCAG 1240
||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 1208 TTTCCCAATTTGTACAATCTTCACATTTTTACCTCTCTCTCTCTGAAAAAAAGAAAACAG 1267
Query 1241 CTAATTCATTT-TTTCTCAACAAGAGTAATGACTTGAGCCCCAAGAATACAGACTCAAGT 1299
||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 1268 CTAATTCATTTATTTCTCAACCAGAGCAATGACTTGAGCCCCAAGAAGACAGACTCAA-- 1325
Query 1300 CTCAAGACTGTCAAACCTAAAA-GACGGCTAAAGGGAAATCTCTTGTCATATTTTGCTCT 1358
| | ||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1326 C--A---CTGTCAAACTTAAAAAGACGGCTCAAGATAAATCTCTTGTCATATTTTGCTCT 1380
Query 1359 TTTTCTGACGAAATATATATATAAATTTGAGTTCTTCATATTCTTTGTTTACTCATTTAT 1418
|||||||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||
Sbjct 1381 TTTTCTGACGGAATATATATAAAAATTTGAGCTATTCATATTCTTT-TTTACTCATTTAT 1439
Query 1419 TTTATATCTAATAATTTCTACTTTATGCTATATGAT 1454
||||| |||||||||||| | ||| ||||| |||||
Sbjct 1440 TTTATTTCTAATAATTTCAATTTTTTGCTACATGAT 1475
> AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886542-7889534 FORWARD LENGTH=1320
Length=1320
Score = 588 bits (318), Expect = 6e-167
Identities = 493/576 (86%), Gaps = 17/576 (3%)
Strand=Plus/Plus
Query 312 ATGTCTCAA-ACGAGCTATTATCGATCACCGTCCGGAGACACGACTTACACCAAAGTGTT 370
|||||| || || |||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 152 ATGTCT-AATACAAGCTATTACCGATCACCGTTCGGAGACACGACTCACACCAAAGTGTT 210
Query 371 CGTTGGAGGATTAGCATGGGAAACTCCTACCGACGAAATGCGTCGTTACTTCGATCAGTT 430
|| ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 211 TGTAGGAGGTTTAGCATGGGAGACTCCCACCGATGAAATGCGCCGTTACTTTGATCAGTT 270
Query 431 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAAAAC-ACCGGCAAATCTAAAGGCT 489
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct 271 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGG-CTACCGGAAAATCTAAAGGCT 329
Query 490 ATGGATTCGTGACGTTTCGGGAGGCGGATTCAGCCACGAGAGCCGTCGCTGATCCAAATC 549
| || || || |||||||| || |||||||||| |||||||||||||||||||| ||||
Sbjct 330 ACGGTTTTGTCACGTTTCGAGACTCGGATTCAGCGACGAGAGCCGTCGCTGATCCGAATC 389
Query 550 CGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCGTCTTTTGGACGGCCTCGACCAT 609
|||||||||| ||| |||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 390 CGGTGATCGATGGACGAAAGGCAAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCAT 449
Query 610 CGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCAGTACCAAAGTGGAGGACCAT 669
|| |||||||||| ||||||||| |||||| || |||||||| ||| | ||||||| ||
Sbjct 450 CGACGCCTCGAGGACGAGGACAAGGAGGAAGCCCTAGTCAGTATCAAGGCGGAGGACAAT 509
Query 670 CAGGTTATACCGGGATGGCTGCACAACTGCCACC-GGCTGCAGCTCCCCAGCTCATGTAT 728
|| | |||||||| |||||||| | ||| | | |||||| ||| ||||||||||||||
Sbjct 510 CAAGCTATACCGGAATGGCTGCTCCGGTGC-AGCAGGCTGCGGCTGCCCAGCTCATGTAT 568
Query 729 CCGTCCTACGGGTACACCTATAACCCTGATCAATTTGGGTACCACCAAGCACTGTACAAC 788
||||| |||||||||||||| || |||| | | ||||||||||||||| || ||||||
Sbjct 569 CCGTCATACGGGTACACCTACAATTCTGA--A-TATGGGTACCACCAAGCCCTATACAAC 625
Query 789 ACACAGTTGCAACAAGCACAATACTATCAGCAGCAACA-GCAGCTTTATGGAGGAGGAGC 847
||||| | ||||| |||||||||||||| |||||| | | | | | |||||||||||
Sbjct 626 GCACAGCTCCAACAGGCACAATACTATCAACAGCAA-ATGTA-CGG-A-GGAGGAGGAGC 681
Query 848 AACATCACCATCATCATCAGGAACTATCATGCCTTC 883
|||||||||||||||||| ||| |||||||||||
Sbjct 682 AACATCACCATCATCATCC--AAC-ATCATGCCTTC 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5