BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476994
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78270.1 | Symbols: AtUGT85A4, UGT85A4 | UDP-glucosyl transf... 1552 0.0
AT1G78265.1 | Symbols: | other RNA | chr1:29450772-29452305 FO... 1380 0.0
AT4G14090.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 71.3 3e-11
> AT1G78270.1 | Symbols: AtUGT85A4, UGT85A4 | UDP-glucosyl transferase
85A4 | chr1:29450563-29452417 REVERSE LENGTH=1792
Length=1792
Score = 1552 bits (840), Expect = 0.0
Identities = 971/1035 (94%), Gaps = 6/1035 (1%)
Strand=Plus/Plus
Query 1 ATCATCATCATTATCGTCAAAAGAATGGAACAACATGGCGGTTCTAGCTCACAGAAACGT 60
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 171 ATCATCATCGTCATCGTCAAAAGGATGGAACAACATGGCGGTTCTAGCTCACAGAAACCT 230
Query 61 CACGCAGTGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 290
Query 121 AAGCTCCTCCACGCCAGAGGCTTCCACATCACTTTCGTCAACACCGACTACAACCACCGC 180
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 291 AAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACACCGACTACAACCACCGC 350
Query 181 CGTATCCTCCGATCACGTGGCTCTCACGCTCTCGAA-GGTCTCCCCTCGTTTCGCTTCGA 239
|||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 351 CGTATCCTCCAATCACGTGGCCCTCACGCTCTC-AACGGTCTCCCCTCGTTTCGCTTCGA 409
Query 240 AACTATCCCTGATGGTCTTCCTTGGACCGAAGTCGACGCTAAGCAAGATATGCTCAAGCT 299
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 410 GACTATCCCCGACGGTCTTCCTTGGACAGACGTCGACGCTAAGCAAGACATGCTCAAGCT 469
Query 300 TATTGACTCTACAATTAACAACTGTTTAGCTCCATTTAAAGAACTCATCCTCCGGTTAAA 359
||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 470 TATTGACTCCACAATAAACAACTGTTTAGCTCCATTCAAAGACCTCATCCTCCGGTTAAA 529
Query 360 CTCCGGTTCTGATATACCACCGGTTCGTTGTATCGTCTCTGACGCTTCAATGAGCTTCAC 419
||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||
Sbjct 530 CTCCGGTTCTGATATACCACCGGTTAGCTGTATCATCTCCGACGCTTCAATGAGCTTCAC 589
Query 420 AATTGACGCGGCGGAGGAGCTTAAAATTCCGGTGGTTCTCCTCTGGACAAACAGTGCTAC 479
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 590 AATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAGTTCTCCTCTGGACCAACAGTGCTAC 649
Query 480 TGCTTTAATCTTGTATCTCCATTATCAAAAACTCATCGAGAAAGAGATAATTCCTCTCAA 539
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 650 TGCTTTAATCTTGTATCTCCATTACCAAAAACTCATCGAGAAAGAGATAATTCCCCTCAA 709
Query 540 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 769
Query 600 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGGATGCTCAAGATCCGAT 659
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 770 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGAATCCTCAAGATCCGAT 829
Query 660 GATTAGTTTCATTCTCCATGTAACTGGAAGAATCAAACGAGCTTCTGCGATCTTCATCAA 719
|||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 830 GATTAGTTTCATCCTTCATGTAACCGGAAGAATCAAAAGAGCTTCTGCGATCTTCATCAA 889
Query 720 CACTTTCGATAACCTCGAGCATAACGTTCTCTTATCTCTGCGTTCTCTTCTTCCTCAGAT 779
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 890 CACTTTCGAAAAACTCGAGCATAACGTTCTCTTATCTCTGCGATCTCTTCTCCCTCAGAT 949
Query 780 CTACTTCGTTGGACCGCTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 839
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTACTCCGTTGGACCGTTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 1009
Query 840 CGGAA-GATTGGGATCGAATCTATGGGAAGAAGAGACGGAATCTTTGGATTGGCTTGACA 898
| ||| | | || || |||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 1010 CAGAAAGCTAGG-ATTGAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATA 1068
Query 899 C-AAAGGCTGAGAAAACTGTGCTTTACGTTAACTTTGGGAGTCTAACGATTTTGACGAGA 957
| |||| |||||||| ||||| ||||||| ||||| |||||||||||| ||||||| ||
Sbjct 1069 CTAAAG-CTGAGAAAGCTGTGATTTACGTCAACTTCGGGAGTCTAACGGTTTTGACTAGT 1127
Query 958 GATCAGATCTTAGAGTTTGCTTGGGGTTTAGCGAGGAGCGGGAAGGAGTTTCTCTGGGTG 1017
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 GAGCAGATCTTAGAGTTCGCTTGGGGTTTAGCGAGGAGCGGGAAAGAGTTTCTCTGGGTG 1187
Query 1018 GTGAGATCTGGTATG 1032
|||||||||||||||
Sbjct 1188 GTGAGATCTGGTATG 1202
Score = 682 bits (369), Expect = 0.0
Identities = 470/517 (91%), Gaps = 13/517 (3%)
Strand=Plus/Plus
Query 1032 GTTTTTATCGGAGACGGAGAATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAA 1091
|||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||
Sbjct 1235 GTTTTTATCGGAGACGAAGAATCGAGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAA 1294
Query 1092 GGTACTTTCGCATCCGGCGATCGGAGGATTTTTGACTCACTGTGGTTGGAATTCGACGTT 1151
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1295 GGTACTTTCGCATCCGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTT 1354
Query 1152 GGAGAGTTTGTTCGCCGGTGTTCCGATGATCTGTTGGCCGTTCTTCGCCGATCAGTTGAC 1211
||||||||||| ||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 1355 GGAGAGTTTGTACGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGAC 1414
Query 1212 GAATCGAAAGTTCTGCTGCGATAATTGGGGGATTGGGATTGAGATCGGCGAAGAGGTAAA 1271
||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| ||
Sbjct 1415 GAATCGAAAGTTCTGTTGCGAGGATTGGGGGATTGGGATGGAGATCGGCGAGGAGGTGAA 1474
Query 1272 GAGGGAGAGAGTGGAGGCGGTGGTCAAAGATCTCATGGACGGAGAGAATGGAATGAGATT 1331
|||||||||||||||| ||||||| ||||| ||||||||||||||||| |||| ||| ||
Sbjct 1475 GAGGGAGAGAGTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTT 1534
Query 1332 AAGAGAGAAGGTGGTGGAGTGGCGGTGCATGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1391
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1535 AAGAGAGAAGGTGGTGGAGTGGCGGCGCTTGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1594
Query 1392 ATCATCGTACGTGAATTTTGAAACGGTGGTAAACAAAGTCCTAACAGGTCAC--GATTAG 1449
|||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||
Sbjct 1595 ATCATCGTACGTGAATTTTGAAACGGTGGTTAATAAAGTCCTTACATGTCACACGATTAG 1654
Query 1450 ATCGACCTAATTGGGCTTTACGTATCCAAA--GGCCCATTAGAA--G---TGTTC----C 1498
||||||||||||||||||| |||||||||| |||||||||||| | |||| |
Sbjct 1655 ATCGACCTAATTGGGCTTTCCGTATCCAAATAGGCCCATTAGAAAAGGCCTGTTTGTTTC 1714
Query 1499 CAATATCATTTGGGCTGGCTTTAATCACAATTTTAAA 1535
|| |||||||||||||||||||||| |||||||||||
Sbjct 1715 CACTATCATTTGGGCTGGCTTTAATGACAATTTTAAA 1751
> AT1G78265.1 | Symbols: | other RNA | chr1:29450772-29452305
FORWARD LENGTH=1448
Length=1448
Score = 1380 bits (747), Expect = 0.0
Identities = 944/1035 (91%), Gaps = 29/1035 (3%)
Strand=Plus/Minus
Query 1 ATCATCATCATTATCGTCAAAAGAATGGAACAACATGGCGGTTCTAGCTCACAGAAACGT 60
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1390 ATCATCATCGTCATCGTCAAAAGGATGGAACAACATGGCGGTTCTAGCTCACAGAAACCT 1331
Query 61 CACGCAGTGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 1271
Query 121 AAGCTCCTCCACGCCAGAGGCTTCCACATCACTTTCGTCAACACCGACTACAACCACCGC 180
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1270 AAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACACCGACTACAACCACCGC 1211
Query 181 CGTATCCTCCGATCACGTGGCTCTCACGCTCTCGAA-GGTCTCCCCTCGTTTCGCTTCGA 239
|||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1210 CGTATCCTCCAATCACGTGGCCCTCACGCTCTC-AACGGTCTCCCCTCGTTTCGCTTCGA 1152
Query 240 AACTATCCCTGATGGTCTTCCTTGGACCGAAGTCGACGCTAAGCAAGATATGCTCAAGCT 299
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1151 GACTATCCCCGACGGTCTTCCTTGGACAGACGTCGACGCTAAGCAAGACATGCTCAAGCT 1092
Query 300 TATTGACTCTACAATTAACAACTGTTTAGCTCCATTTAAAGAACTCATCCTCCGGTTAAA 359
||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1091 TATTGACTCCACAATAAACAACTGTTTAGCTCCATTCAAAGACCTCATCCTCCGGTTAAA 1032
Query 360 CTCCGGTTCTGATATACCACCGGTTCGTTGTATCGTCTCTGACGCTTCAATGAGCTTCAC 419
||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||
Sbjct 1031 CTCCGGTTCTGATATACCACCGGTTAGCTGTATCATCTCCGACGCTTCAATGAGCTTCAC 972
Query 420 AATTGACGCGGCGGAGGAGCTTAAAATTCCGGTGGTTCTCCTCTGGACAAACAGTGCTAC 479
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 971 AATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAGTTCTCCTCTGGACCAACAGTGCTAC 912
Query 480 TGCTTTAATCTTGTATCTCCATTATCAAAAACTCATCGAGAAAGAGATAATTCCTCTCAA 539
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 911 TGCTTTAATCTTGTATCTCCATTACCAAAAACTCATCGAGAAAGAGATAATTCCCCTCAA 852
Query 540 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 599
|| | | || ||| | ||| || | | | | || | || |||||||||
Sbjct 851 AG----G--T-AC--GAATC-G-ATT--GA-A-G-A--TC-ATC--A-AC-GTCGATGAA 815
Query 600 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGGATGCTCAAGATCCGAT 659
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 814 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGAATCCTCAAGATCCGAT 755
Query 660 GATTAGTTTCATTCTCCATGTAACTGGAAGAATCAAACGAGCTTCTGCGATCTTCATCAA 719
|||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 754 GATTAGTTTCATCCTTCATGTAACCGGAAGAATCAAAAGAGCTTCTGCGATCTTCATCAA 695
Query 720 CACTTTCGATAACCTCGAGCATAACGTTCTCTTATCTCTGCGTTCTCTTCTTCCTCAGAT 779
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 694 CACTTTCGAAAAACTCGAGCATAACGTTCTCTTATCTCTGCGATCTCTTCTCCCTCAGAT 635
Query 780 CTACTTCGTTGGACCGCTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 839
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTACTCCGTTGGACCGTTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 575
Query 840 CGGAA-GATTGGGATCGAATCTATGGGAAGAAGAGACGGAATCTTTGGATTGGCTTGACA 898
| ||| | | || || |||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 574 CAGAAAGCTAGG-ATTGAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATA 516
Query 899 C-AAAGGCTGAGAAAACTGTGCTTTACGTTAACTTTGGGAGTCTAACGATTTTGACGAGA 957
| |||| |||||||| ||||| ||||||| ||||| |||||||||||| ||||||| ||
Sbjct 515 CTAAAG-CTGAGAAAGCTGTGATTTACGTCAACTTCGGGAGTCTAACGGTTTTGACTAGT 457
Query 958 GATCAGATCTTAGAGTTTGCTTGGGGTTTAGCGAGGAGCGGGAAGGAGTTTCTCTGGGTG 1017
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 456 GAGCAGATCTTAGAGTTCGCTTGGGGTTTAGCGAGGAGCGGGAAAGAGTTTCTCTGGGTG 397
Query 1018 GTGAGATCTGGTATG 1032
|||||||||||||||
Sbjct 396 GTGAGATCTGGTATG 382
Score = 501 bits (271), Expect = 8e-141
Identities = 323/349 (93%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 1032 GTTTTTATCGGAGACGGAGAATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAA 1091
|||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||
Sbjct 349 GTTTTTATCGGAGACGAAGAATCGAGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAA 290
Query 1092 GGTACTTTCGCATCCGGCGATCGGAGGATTTTTGACTCACTGTGGTTGGAATTCGACGTT 1151
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 289 GGTACTTTCGCATCCGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTT 230
Query 1152 GGAGAGTTTGTTCGCCGGTGTTCCGATGATCTGTTGGCCGTTCTTCGCCGATCAGTTGAC 1211
||||||||||| ||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 229 GGAGAGTTTGTACGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGAC 170
Query 1212 GAATCGAAAGTTCTGCTGCGATAATTGGGGGATTGGGATTGAGATCGGCGAAGAGGTAAA 1271
||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| ||
Sbjct 169 GAATCGAAAGTTCTGTTGCGAGGATTGGGGGATTGGGATGGAGATCGGCGAGGAGGTGAA 110
Query 1272 GAGGGAGAGAGTGGAGGCGGTGGTCAAAGATCTCATGGACGGAGAGAATGGAATGAGATT 1331
|||||||||||||||| ||||||| ||||| ||||||||||||||||| |||| ||| ||
Sbjct 109 GAGGGAGAGAGTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTT 50
Query 1332 AAGAGAGAAGGTGGTGGAGTGGCGGTGCATGGCGGAAGAAGCTTCGGCG 1380
||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 49 AAGAGAGAAGGTGGTGGAGTGGCGGCGCTTGGCGGAAGAAGCTTCGGCG 1
> AT4G14090.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr4:8122188-8123835 REVERSE LENGTH=1648
Length=1648
Score = 71.3 bits (38), Expect = 3e-11
Identities = 91/114 (80%), Gaps = 13/114 (11%)
Strand=Plus/Plus
Query 1052 ATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAAGGTACTTT--CGCATCCG-G 1108
||||||||||| || | | |||||||||||||| || || | ||| ||||| | |
Sbjct 1008 ATCGAGGATTGGTGGT--G-GGATGGTGTTCTCA-GA-CAGCTGTTTTGGCGCAT-TGTG 1061
Query 1109 C-GATCGGAGGATTTT-TGACTCACTGTGGTTGGAATTCGACGTTGGAGAGTTT 1160
| | | ||| | |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1062 CTG-TGGGATG-TTTTGTGACTCATTGTGGTTGGAATTCGACGTTGGAGAGTTT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5