BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476998
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78300.1 | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general ... 1507 0.0
AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1... 604 5e-172
AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory ... 392 4e-108
> AT1G78300.1 | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general
regulatory factor 2 | chr1:29461671-29463385 FORWARD LENGTH=1325
Length=1325
Score = 1507 bits (816), Expect = 0.0
Identities = 960/1025 (94%), Gaps = 27/1025 (3%)
Strand=Plus/Plus
Query 85 accttttctctctttttgatcagatctcagatcttt-tctctttga------------a- 130
||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 130 ACCGTTTCTCTCTTTTTGATCAGATCTCAGATCTTTCCCTCTTTGATTCTTCTTCCTTAG 189
Query 131 atcgattctctctAGGAACAACAATGGCGATTTCTGCGCGTGAAGAGTTCGTATACATGG 190
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 190 ATCGATTCTCTCTAGAAACAACAATGGCG---TCTGGGCGTGAAGAGTTCGTATACATGG 246
Query 191 CTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTTGAGTTTATGGAGAAAGTCT 250
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 247 CTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTAGAGTTTATGGAGAAAGTCT 306
Query 251 CCGCCGCCGTCGATGGCGATGAACTCACCGTTGAAGAGCGAAATCTTCTCTCTGTCGCTT 310
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 307 CCGCCGCCGTTGATGGCGATGAACTCACCGTAGAAGAGCGAAATCTTCTCTCCGTCGCTT 366
Query 311 ACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATTATTTCATCGATCGAGCAGA 370
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 367 ATAAGAATGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATCATTTCATCGATCGAGCAGA 426
Query 371 AAGAAGAGAGTCGCGGTAACGATGACCACGTCACGGTGATCCGTGATTACAGGTCTAAGA 430
| |||||||| || |||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 427 AGGAAGAGAGCCGTGGTAACGATGACCACGTCACGGCGATCCGTGAATATAGGTCTAAGA 486
Query 431 TCGAGACGGAACTCTCTGGAATCTGCGACGGAATCCTCAAGTTGCTTGACTCTAGACTCA 490
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 487 TCGAGACGGAACTCTCCGGAATCTGCGACGGAATCCTTAAGTTGCTTGACTCTAGACTCA 546
Query 491 TCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTTTTACCTGAAGATGAAGGGAGATTATC 550
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 TCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTTTTACCTTAAGATGAAGGGAGATTATC 606
Query 551 ACAGGTACTTGGCTGAGTTCAAGACTGGTCAAGAGAGGAAAGACGCCGCTGAACACACTC 610
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
Sbjct 607 ACAGGTACTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGACGCCGCCGAACATACAC 666
Query 611 TCTCCGCTTACAAATCTGCTCAGGATATTGCTAATGCAGAGCTTGCTCCTACTCACCCAA 670
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 667 TCGCCGCTTACAAATCTGCTCAGGATATTGCTAATGCAGAGCTTGCTCCAACACACCCAA 726
Query 671 TCCGTCTTGGTCTTGCATTGAACTTCTCTGTGTTCTACTACGAGATCCTCAATTCTCCTG 730
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 727 TTCGTCTTGGTCTTGCATTGAACTTCTCTGTGTTCTATTACGAGATCCTCAATTCTCCTG 786
Query 731 ATCGTGCTTGCAACCTCGCCAAACAGGCCTTTGATGAAGCGATTGCAGAGTTGGACACTC 790
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 ATCGTGCCTGTAACCTCGCCAAACAGGCCTTTGATGAGGCGATTGCAGAGTTGGACACTC 846
Query 791 TTGGTGAAGAGTCATACAAAGACAGTACCTTGATCATGCAGCTTCTTCGTGACAACCTCA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 847 TTGGTGAAGAGTCATACAAAGACAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTCA 906
Query 851 CTCTCTGGACATCCGATATGCAGGATGATGCTGCGGATGAAATCAAGGAAGCAGCAGCGC 910
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 907 CTCTCTGGACATCTGATATGCAGGATGATGCTGCGGATGAGATCAAGGAAGCAGCAGCGC 966
Query 911 CAAAACCGACCGAGGAACAGCAGTGATCTTTTGAGTGAAACTGCTAGTTTTCT---AGGG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 967 CAAAACCGACCGAGGAACAGCAGTGATCTTTTGAGTGAAACTGCTAGTTTTCTTCTAGGG 1026
Query 968 TTTGGAATTTCTTCTCTTTC--GTCCATATGTTTT-CTTAATC-ATGTAAGAGGTCGCTC 1023
|||||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||
Sbjct 1027 TTTGGAATTTCTTCTCTTTCTCGTCCATATGTTTTTCTTAATCCATCTAAGAGGTCGCTC 1086
Query 1024 TTGCCATTTCGCTTTATCTTCAA--GCTTATTCATTCATCATATTTGTGGCAAGTCCGAA 1081
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1087 TTGCCATTTCGCTC-ATCTTCAAAAGCTTATTCATTCATCATATTTGTGGCAAGTCTGAA 1145
Query 1082 CCATC 1086
|||||
Sbjct 1146 CCATC 1150
Score = 163 bits (88), Expect = 3e-39
Identities = 110/120 (92%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 1085 TCtt-ttt-ttt-ttGTTATCGATTTCAATGTCTATGCAATCGAACCTTGCTTTGTTTTC 1141
|||| ||| ||| ||||||||||||||||||||| || ||||||| |||||||| |||||
Sbjct 1189 TCTTATTTCTTTGTTGTTATCGATTTCAATGTCTGTGTAATCGAAACTTGCTTTCTTTTC 1248
Query 1142 CCATCAATTTGAAGATCATAAAGTCTCTTGTCTCTTATCTTGTTGCTTAGATTGTTTGTT 1201
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1249 TCATCAATTTGAAGATCATAAAGTCTCTTGTCTCTTATCTTGTTGCGTAGATTGATTGTT 1308
Score = 115 bits (62), Expect = 9e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 AGATTAAATCTTGGTTCCAAATTTCACTCTTTTCCTCTAAAACGCATTTATCACTTTCCC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATTAGATCTTGGTTCCAAATTTCACTCTTTTCCTCTAAAACGCATTTATCACTTTCCC 60
Query 61 TCATT 65
|||||
Sbjct 61 TCATT 65
> AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1:12867126-12868890
FORWARD LENGTH=1402
Length=1402
Score = 604 bits (327), Expect = 5e-172
Identities = 586/711 (82%), Gaps = 18/711 (3%)
Strand=Plus/Plus
Query 172 GAAGAGTTCGTATACATGGCTAAGCTCGCGGAGCAAGCGGAGA-GGTACGAAGAGATGGT 230
||||||||||| ||| | || |||||||| ||||||||||| | | |||||||| |||||
Sbjct 172 GAAGAGTTCGTGTACCTCGCAAAGCTCGCAGAGCAAGCGGA-ACGTTACGAAGAAATGGT 230
Query 231 TGAGTTTATGGAGAAAGTCTCCGCCGCCGTCGATGGCGATGAACTCACCGTTGAAGAGCG 290
||| || ||||| |||||| | | ||||| || || ||||||||||| ||||| ||
Sbjct 231 TGAATTCATGGAAAAAGTCGCTGAAGCCGTTGACAAAGACGAACTCACCGTCGAAGAACG 290
Query 291 AAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTAT 350
||||| ||||| ||||||||||| ||||| || || ||||| ||||| || ||| | ||
Sbjct 291 TAATCTCCTCTCCGTCGCTTACAAAAACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAAT 350
Query 351 TATTTCATCGATCGAGCAGAAAGAAGAGAGTCGCGGTAACGATGACCACGTCACGGTGAT 410
|| || || || || || |||||||||||||| |||||||||||||| || || |||
Sbjct 351 CATCTCTTCCATTGAACAAAAAGAAGAGAGTCGTGGTAACGATGACCATGTGACCACGAT 410
Query 411 CCGTGATTACAG--GTCTAAGATCGAGA-CGGAACTCTCTG-GAATCTGCGACGGAATCC 466
|||||||||||| | | |||||||| | | || | || | |||||| ||||| || |
Sbjct 411 CCGTGATTACAGAAG-C-AAGATCGA-ATCTGAGTTATC-GAAAATCTGTGACGGTATTC 466
Query 467 TCAAG-TTGCTTGACT-CTAGACTCATCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTT 524
| ||| || ||||| | ||||||| | ||||| ||||| ||| ||||| ||||| ||
Sbjct 467 TTAAGCTT-CTTGA-TACTAGACTTGTTCCTGCTTCTGCTAATGGAGATTCTAAGGTTTT 524
Query 525 TTACCTGAAGATGAAGGGAGATTATCACAGGTACTTGGCTGAGTTCAAGACTGGTCAAGA 584
|||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 525 TTACCTTAAGATGAAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGA 584
Query 585 GAGGAAAGACGCCGCTGAACACACTCTCTCCGCTTACAAATCTGCTCAGGATATTGCTAA 644
||||||||| || |||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct 585 GAGGAAAGATGCTGCTGAACATACTCTCACCGCTTACAAAGCTGCTCAGGATATTGCTAA 644
Query 645 TGCAGAGCTT-GCTCCTACTCACCCAATCCGTCTTGGTCTT-GCATTGAACTTCTCTGTG 702
||| || || ||||| || || || || ||||||||| || || ||||| |||||||||
Sbjct 645 TGCTGA-ATTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTTTGAATTTCTCTGTG 702
Query 703 TTCTACTACGAGATCCTCAATTCTCCTGATCGTGCTTGCAACCTCGCCAAACAGGCCTTT 762
|| ||||| ||||| || |||||||| ||||||||||| || ||||| || ||||| |||
Sbjct 703 TTTTACTATGAGATTCTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTT 762
Query 763 GATGAAGCGATTGCAGAGTTGGACACTCTTGGTGAAGAGTCATACAAAGACAGTACCTTG 822
|||||||| ||||| ||||| || |||||||| || ||||||||||| || |||||||||
Sbjct 763 GATGAAGCCATTGCTGAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTG 822
Query 823 ATCATGCAGCTTCTTCGTGACAACCTCACTCTCTGGACATCCGATATGCAG 873
||||||||||||||||||||||| || ||||||||||| || || ||||||
Sbjct 823 ATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
> AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory
factor 5 | chr5:5243745-5245820 REVERSE LENGTH=1162
Length=1162
Score = 392 bits (212), Expect = 4e-108
Identities = 575/744 (77%), Gaps = 50/744 (7%)
Strand=Plus/Plus
Query 184 TACATGGCTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTTGAGTTTATGGAG 243
||| |||| ||| | || |||||||| ||| | ||||| || ||||||||||| ||||||
Sbjct 126 TACTTGGCCAAGTTAGCCGAGCAAGCTGAGCGTTACGAGGAAATGGTTGAGTTCATGGAG 185
Query 244 AAAGTCTCCGCCG-CCGTCGATG-GCGATGAACTCACCGTTGAAGAGCGAAATCTTC-TC 300
||||| | | | |||| || | ||| ||||| || ||||||||| | |||| || |
Sbjct 186 AAAGT-TGCAAAGACCGTGGA-GACCGAGGAACTTACTGTTGAAGAGAGGAATC-TCTTG 242
Query 301 TCTGTCGCTTACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATTATTTCATCG 360
||||| |||||||||||||||||||||||| | | || || ||| | ||||| || ||
Sbjct 243 TCTGTTGCTTACAAGAACGTGATTGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCC 302
Query 361 ATCGAGCAGAAAGAAGAGAGTC-GCGGTAACGA-TGACCACGTCACGGTGATC-CGTGAT 417
|| |||||||| ||||| || | | || ||| | ||| || || || | ||| | |||
Sbjct 303 ATTGAGCAGAAGGAAGATAG-CAGGGGCAAC-AGTGATCATGTTTCGATTATCAAG-GAT 359
Query 418 TACAG-GTCTAAGATCGAGACGGAACTC-TCTGGAATCTGCGACGGAATCCTCAA-GTTG 474
||||| | | ||||| || || || ||| | | || || || || || | || ||
Sbjct 360 TACAGAGGC-AAGATTGAAACTGAGCTCAGCAAG-ATTTGTGATGGCATTTTGAACCTT- 416
Query 475 CTTGA--CTCTAGACTCATCCCTGCCGCTGCTTCTGG-TGATTCCAAGGTCTTTTACCTG 531
||||| ||| | ||||| ||||| ||| ||| ||| ||| ||||| || |||||||||
Sbjct 417 CTTGAGGCTC-A-TCTCATTCCTGCTGCTTCTT-TGGCTGAGTCCAAAGTTTTTTACCTG 473
Query 532 AAGATGAAGGGAGATTATCA-CAGGTAC-TTGGCTGAGTTCAAGACTGGT-CAAGAGAGG 588
|||||||||||||||||||| | ||||| ||| |||| |||||||||||| | ||||||
Sbjct 474 AAGATGAAGGGAGATTATCATC-GGTACCTTG-CTGAATTCAAGACTGGTGCT-GAGAGG 530
Query 589 AAAGACGCCGCTGA-ACACACTCTC-TCCGCTTACAAATCTGCTCAGGATATTGCTAATG 646
||||| || ||||| | |||||| | || ||||| |||||||||||||||||| ||
Sbjct 531 AAAGAAGCTGCTGAGAG-CACTCTTGTT-GCCTACAAGTCTGCTCAGGATATTGCTCTTG 588
Query 647 CAGAGCTTGCTCCTACTCACCCAATCCGTCTTGGTCTTGCA-TTGAACTTCTCTGTGTTC 705
| || || ||||| |||||||||||| | || || ||||| || ||||||||||| |||
Sbjct 589 CTGATCTGGCTCCCACTCACCCAATCAGACTGGGGCTTGCTCTT-AACTTCTCTGTTTTC 647
Query 706 TACTACGAGATCCTCAATTC-TCCTGATCGTGCTTGCAACCTCGCCAAA-CAGGCCTTTG 763
||||| ||||| ||||| || || ||||||||| || | ||||| ||| ||||| ||||
Sbjct 648 TACTATGAGATTCTCAACTCATC-TGATCGTGCGTGTAGTCTCGC-AAAGCAGGCTTTTG 705
Query 764 ATGAAGCGAT-TGCAGAGTTGGACACTCTTGGTGA-AG-AGTCATACAAAGACAGTACCT 820
|||| || || | | ||| | ||||| |||| || || | |||||||| |||||||| |
Sbjct 706 ATGAGGCAATCT-CGGAGCTAGACACA-TTGG-GAGAGGAATCATACAAGGACAGTACAT 762
Query 821 TGATCATGCAGCTTCTTCGTGACAACCTCACTCTCTGGACATCCGATATGCAG-GATGAT 879
|||||||||||||||| |||||||| ||||| |||||||| || || | || || ||
Sbjct 763 TGATCATGCAGCTTCTCCGTGACAATCTCACCCTCTGGACTTCTGACCT-CAATGACGAA 821
Query 880 GCTGCG-GATGAAATCAAGGAAGC 902
|||| | ||||| |||||||||||
Sbjct 822 GCTG-GTGATGATATCAAGGAAGC 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5