BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476999
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78310.1 | Symbols: | VQ motif-containing protein | chr1:29... 1744 0.0
> AT1G78310.1 | Symbols: | VQ motif-containing protein | chr1:29463656-29465053
REVERSE LENGTH=1398
Length=1398
Score = 1744 bits (944), Expect = 0.0
Identities = 1209/1327 (91%), Gaps = 57/1327 (4%)
Strand=Plus/Plus
Query 1 TTTTCATCAGCTTCGTCTTCTCCATTATCTCTCTA-CCAAATCTGGCAGAGaaaaacaaa 59
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 29 TTTTCATCATCTTCGTCTTCTCCATTATCTCTCTACCCAAATCTGGCAGAGAAAAAC--- 85
Query 60 aaaaaaaaaaCCGAAGAAGAAGAAAAACTTGCGATATGGACAAGAGCTGTAACTCCTCCG 119
|||| || |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 86 ---AAAAGAA--GAAGAAGAAGAAAAACTTTCGATATGGATAAGAGCTGTAACTCCTCCG 140
Query 120 GCGATTCATCCGCCGTATCTGCCTCCGCAACGAGTAGTACCGGTAACAATACAACGAACA 179
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 141 GCGATTCCTCCGCCGTATCCGCCTCTGCAACGAGTAGTACCGGTAACAATACAACGAACA 200
Query 180 GAGATCATTACCTGCGACAACTCAATAAGCTTTCTCACAAAATATCAAAACCGACAAACT 239
|||||||||||||| |||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 201 GAGATCATTACCTGAGACAACTCAATAAGCTGTCTCATAAGATATCAAAACCGACGAACT 260
Query 240 CCTCCTCCTTCGTCTCCG-CGGTGAATCGTGAAATTGATCTTCCA--------A----T- 285
| ||||||| |||||||| | | |||||||||||||||||||||| | |
Sbjct 261 CTTCCTCCTCCGTCTCCGTC-GCGAATCGTGAAATTGATCTTCCACCTCCTCCACCGCTG 319
Query 286 ----T-AATCAAGGGAATCTCCATCAACATCAGCCTCCTGTTTACAATATCAACAAGAAT 340
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 CAAATCAATCAAGGGAATCTCCATCAACATCAACCTCCTGTTTACAATATCAACAAGAAC 379
Query 341 GATTTCAGAGATGTTGTTCAGAAACTCACCGGTTCACCTGCACATGAACGGATCTCTGCT 400
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 380 GATTTCAGAGATGTTGTTCAGAAACTAACCGGTTCACCTGCACATGAACGGATCTCTGCT 439
Query 401 CCGCCGCAAAAACCGATTCATCACCCTAAGCCTCAACAGAGTTCGCGTCTACATAGGATT 460
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 440 CCGCCGCAACAACCGATTCATCACCCTAAACCTCAACAGAGTTCGCGTCTACATAGGATC 499
Query 461 CGCCCTCCTCCGTTGGCTCATGTTATCAATCGTCCTCCTGGTTTGCTAAATGACGCACTC 520
|| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 500 CGTCCTCCTCCTTTGGTTCACGTTATCAATCGTCCTCCTGGTTTGCTAAATGACGCACTT 559
Query 521 ATTCCTCAAGGTTCTCATCACATGAATCAAAACTGGACCGGCGGTGGATTTAACCTTCGA 580
|| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 560 ATCCCTCAAGGTTCTCATCACATGAATCAAAACTGGACTGGCGTTGGATTTAACCTTCGA 619
Query 581 CCAACGGCGCCGCTTTCTCCTCTCCCGCCGTTACCTCCGGTTCACGCGGCGGCGGAATCT 640
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 620 CCAACGGCGCCGCTTTCTCCTCTCCCGCCGTTACCACCGGTTCACGCGGCGGCGGAATCA 679
Query 641 CCGGTCTCTTCGTACATGCGGTATCTTCAGAACTCGATGTTCGCAATCGATTCGAATCGG 700
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 680 CCGGTCTCTTCGTACATGCGGTATCTCCAGAACTCGATGTTCGCAATCGATTCGAATCGG 739
Query 701 AAAGATTTCTCTGGATTATCTCCGTTAGCTCCTCTGGTCTCACCTCGTTGGTACCAACAA 760
||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 740 AAAGAGTTCTCTGGATTATCTCCGTTAGCTCCTTTGGTCTCACCTCGTTGGT----AC-- 793
Query 761 CAACAACAGGAAAACGCACCGCCGTCGCAGCAGAACAGTCTTCCACCGCCACATCCTCCT 820
||||||||||||||||| || || |||||||| |||||| ||||||| ||||||||||||
Sbjct 794 CAACAACAGGAAAACGCTCCACCATCGCAGCATAACAGTTTTCCACCACCACATCCTCCT 853
Query 821 CCTCCTTCCGCCGCTGTTTCGCAGACGGCGCCGACATCGATTCCGGCGCCTCCACCGTTT 880
||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 854 CCTCCTTCCTCTGCTGTTTCGCAGACGGTGCCGACATCGATTCCGGCGCCTCCACTGTTT 913
Query 881 GGATGTTTGAA-CTCGCCTAAATCTCCGTACGGATTACTCTCTCCGAGCATACTTCTATC 939
||||| || || ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 914 GGATG-TTCAAGTTCGCCTAAATCTCCGTACGGATTACTCTCACCGAGCATACTTTTATC 972
Query 940 GCCAGCGTCCGGTCAATTAGGGTTTCCGGTATCTCCGACGACGGTGCCGCTTCCTAGCCC 999
|||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 973 GCCATCGTCAGGTCAATTAGGGTTCCCTGTATCTCCGACGACGGTGCCGCTTCCTAGCCC 1032
Query 1000 TAAATACAAAGGTCATTGATCAGAAAA-C-----CTCTTGTCGGTCAAAGTGA-AAGACG 1052
||||||||||||||||||||||||||| | | ||||||||||||||||| || |||
Sbjct 1033 TAAATACAAAGGTCATTGATCAGAAAATCGGAAACCCTTGTCGGTCAAAGTGAGAAAACG 1092
Query 1053 TCGTCGTTTTGACCGTCACGACAAAATTCCCTTTGTTCTTTTTGTACATCATTAGTGGAG 1112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TCGTCGTTTTGACCGTCGCGACAAAATTCCCTTTGTTCTTTTTGTACATCATTAGTGGAG 1152
Query 1113 --TGGTGGGATCATTTGtttttttttt-GTTAATTAACTCAAAAATTACTTAAAATCCGt 1169
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1153 AGTGGTGGGATCATTTGTTTTTTTTTTTGTTAATTAACTCAAAGATTACTTAAA-TCCGT 1211
Query 1170 ttttttttttATACTTTCTTTTGTTCT-ATG-TTTGTTCATGTTAGAAACAAAGA---CT 1224
||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| ||
Sbjct 1212 TTTTTTTTTTA--CTTTCTTTTGTTTTCATGGTTTGTTCATGTTAGAAACAAAGAAGACT 1269
Query 1225 AGGAAAAAGAAACGAATACACTTTTGCAACTCTATTGAATTCTCTTATAAGTTTGCAATT 1284
|||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 1270 AGGAAAAAGAAAGGAATACACTTTTGCAACTCTATTCAATT-T-TTATAAGTTTGCCATT 1327
Query 1285 ATCATTT 1291
|| ||||
Sbjct 1328 ATGATTT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5