BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477006
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78410.1 | Symbols: | VQ motif-containing protein | chr1:29... 695 0.0
> AT1G78410.1 | Symbols: | VQ motif-containing protein | chr1:29502582-29503241
FORWARD LENGTH=660
Length=660
Score = 695 bits (376), Expect = 0.0
Identities = 508/566 (90%), Gaps = 31/566 (5%)
Strand=Plus/Plus
Query 1 AAATATACAAAACATCTAAATACCCAAAGACACAGG-A-AGAGCTAAA-CTGCTATATAC 57
|||| |||||||||||| || ||||||||||||||| | ||||||||| ||| |||||||
Sbjct 1 AAATCTACAAAACATCTGAACACCCAAAGACACAGGAAGAGAGCTAAAGCTGATATATAC 60
Query 58 T-A--ACTAAGATCA-TT--TC-A--TCATCATCAACACCAC-AAATTTTCTTTTC-TGT 106
| | |||||||||| || || | | |||||||||||||| ||||||||||||| |||
Sbjct 61 TAAGTACTAAGATCATTTGATCAACCTAATCATCAACACCACAAAATTTTCTTTTCTTGT 120
Query 107 TTCT-TAAATCGAATT-ATTTGA-TAATAATGTCTGGAAGAGGGAGAGTGAAATCGGAGC 163
|||| | ||||| ||| |||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 121 TTCTCT-AATCG-ATTAATTT-AGTAATAATGTCTGGAAGAGGGAAAGTGAAATCGGAGC 177
Query 164 CGATGAAAGTTGTATTCATTAACACACAGTATGTTGAGACAGATGCTCGTAGCTTCAAGA 223
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGATGAAGGTTGTGTTCATTAACACACAGTATGTTGAGACAGATGCTCGTAGCTTCAAGA 237
Query 224 CCGTTGTTCAAGAACTCACCGGTAAGGACGCCATCGTCGCCGCCGGTCCTTTTGATTCCC 283
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 238 CCGTTGTTCAAGAACTCACCGGTAAGAACGCCATCGTCGCCGCCGGTCCTTTTGATTCGC 297
Query 284 CCTCTGCTACCGACGGCCGTTGGTATGGTGGGGGTAGTAAAATCGGTGAAGATACTAGAC 343
|||||||| |||||||||||| || | ||| ||||||||||||||||||||||| ||||
Sbjct 298 CCTCTGCTTTCGACGGCCGTTGTTACGATGGCGGTAGTAAAATCGGTGAAGATACCAGAC 357
Query 344 AGCTCTACGGCGGTGGCGGCGGAGGAGGAGGAGGACGAGTGGGGACGATGACCGAGTTCG 403
||||| ||||||||||||||||||||||| || | ||||||||| ||| |||||||
Sbjct 358 AGCTCCACGGCGGTGGCGGCGGAGGAGGACGA--A----TGGGGACGACGACGGAGTTCG 411
Query 404 ATAGATTATTCAAAGAGATGCCTCCCTTGGAAGAATTGTATAAACTATGGTCAGAAAATT 463
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 412 ATAGATTATTCAAAGAGATGCCTCACATGGAAGAATTGTATAAACTATGGTCAGAATATT 471
Query 464 GAGTCATTAATAATTTCTGTGTTAATGATTTT-AAATCATTCGTTTTCTTCGAAAATCTT 522
||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 472 GAGTCATTAATAATTTCTGTGC-AATGATTTTTAAATCATTCGTTTTCTTCCAAAATCTT 530
Query 523 T-CTTTT--ATCTACTGAGATAATGT 545
| ||||| ||||| |||||||||||
Sbjct 531 TTCTTTTTTATCTAATGAGATAATGT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5