BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477012
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708, ... 1528 0.0
AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein |... 169 9e-41
AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708, ... 165 1e-39
> AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708,
subfamily A, polypeptide 3 | chr1:29528253-29530665 FORWARD
LENGTH=1810
Length=1810
Score = 1528 bits (827), Expect = 0.0
Identities = 992/1073 (92%), Gaps = 6/1073 (1%)
Strand=Plus/Plus
Query 28 AAGAGTTGTCGCTGTGGTCAACACTTGAGAGGCAGCACGATGAGCTCCATATGGAACGTT 87
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAGAGTTGTAGCTGTGGTCAACACTTGAGAGGCAGCACGATGAGCTCCATATGGAACGTT 117
Query 88 GCAATGTTGATATTAGCCTTAGTGGTTGTGAGGATCAGCCACTGGCTTTACCGATGGTCA 147
||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCAATGTTGATGGTAGCTTTGGTGGTTGTGAGGATCAGCCACTGGCTTTACCGATGGTCA 177
Query 148 AACCCTAAGTGTAATGGCAAGTTACCACCGGGAGCTATGGGTTTTCCAATCATTGGAGAG 207
||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 178 AACCCTAAGTGCCCTGGCAAGTTACCACCTGGATCGATGGGTTTTCCAATCATTGGAGAG 237
Query 208 ACTATTGATTTCTTAAAGCCTTGTGGATTC-AACGATATCCCAACCTTTGTAAAGAAGAG 266
||| | |||||||| |||||||||||| || || | ||||||||||||||| ||||||||
Sbjct 238 ACTCTCGATTTCTTTAAGCCTTGTGGAGTCGAA-GGTATCCCAACCTTTGTTAAGAAGAG 296
Query 267 GATGATAAGGTATGGACTGTTGTTTCGGACAAACATTTTCGGTTCCAAAACCGTGGTTTC 326
||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 297 GATGATAAGGTATGGGCCGTTGTTTCGAACAAACATTTTTGGTTCCAAAACCGTGGTTTC 356
Query 327 GGCGGATCCAGATGTAATCAACCAGATTTTCCGGCAAGAGAACACGTCTTTTGGGCTAGG 386
| | ||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 357 GACAGATCCGGATGTGATCCACCAGATTTTCCGGCAAGAGAACACGTCTTTTGAGCTAGG 416
Query 387 CTATCCGGACATACTTGTGAAAGTATTTGGAAAAGATAATTTGTTCTTGAAGGAAGTGTT 446
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTATCCAGACATATTTGTGAAAGTATTTGGAAAAGATAATTTGTTCTTGAAGGAAGTGTT 476
Query 447 CATCCACAAGTACCTCCACAAAGTCACTATGCAAATTATTGGCTCCGAGGGTTTGAAGCA 506
|||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 477 CATCCACAAGTACCTCCAAAAAATCACTATGCAAATTCTTGGCTCCGAGGGTTTGAAGCA 536
Query 507 AACAATGATAGGAAACATGGACAAAGCTACCCGCGACCATTTTAGATTGAAGGCTAGCCA 566
||||||| ||||||||||||||||||| |||||||||||| |||| | | ||||||||
Sbjct 537 AACAATGTTAGGAAACATGGACAAAGCAACCCGCGACCATATTAGGTCCATTGCTAGCCA 596
Query 567 GGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTTGATTGTGGCGTACATGACACCAAA 626
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 597 GGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTTGGTAGTAGCGTACATGACACCAAA 656
Query 627 GCTGATAAGTAACCTTAAACCAGAGACGCAATCAAAGCTTATAGATAATCTCAACGCCTT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTGATAAGTAACCTTAAACCAGAGACGCAATCAAAGCTTATAGATAATCTCAACGCCTT 716
Query 687 CAATCTTGATTGGTTTCAGTCCTTCTTTAGTCTCTCTTCTTGGAAAGCTCTCATCAAAGT 746
|||||||||||||||| |||||||||| || |||||| ||||||||||| ||| |||||
Sbjct 717 CAATCTTGATTGGTTTAAGTCCTTCTTAAGACTCTCTACTTGGAAAGCTGTCACCAAAGC 776
Query 747 CCTCAAGTCACGCGGAGAAGCGATTCAGGTGATGAAAGACGTTCTCA-GTATGAGAAGAG 805
|||||||||||||| |||||| || |||||||||||||||||||||| | ||||||| ||
Sbjct 777 CCTCAAGTCACGCGAAGAAGCTATCCAGGTGATGAAAGACGTTCTCATG-ATGAGAAAAG 835
Query 806 AGTCACGAGAGAAGCAAGAAGACTTCCTCAACACG-TTGCTAGAAGAACTGGACAAAGAA 864
|| | ||||||||||||||||||||||| |||||| || |||||||||||||| |||||
Sbjct 836 AGACGCGAGAGAAGCAAGAAGACTTCCTTAACACGCTT-CTAGAAGAACTGGAGAAAGAC 894
Query 865 AGTAGCATTTTCGACCAAGGATCCGCTACAAACCTCATCTTCCTTCTGGCATTCGTCGCG 924
||||| |||||||||||||||| |||| ||| ||||||||||||||||| || | | |
Sbjct 895 GGTAGCTTTTTCGACCAAGGATCGGCTATAAATCTCATCTTCCTTCTGGCGTTTGCCTTG 954
Query 925 AGAGAAGGTACCTCCAGTTGTACTGCTTTGGCCGTGAAATTCATATCCAAAGACCCGAAA 984
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 AGAGAAGGTACCTCTAGTTGTACTGCTTTGGCCGTGAAGTTCATATCCAAAGACCCGAAA 1014
Query 985 GTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAACAGAAAAGATAAGAAA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1015 GTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAACAGAAAAGATAAGGAA 1074
Query 1045 GCTGGAGTTAGCTGGGAAGAATACACACACAACATGACTTTCACAAACATGGT 1097
||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1075 GCTGGAGTTAGCTGGGAAGAATATAGACACAACATGACTTTCACCAACATGGT 1127
Score = 401 bits (217), Expect = 8e-111
Identities = 272/297 (92%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 1131 GTTATCAATGA-GTCGCTTCGCCT-GTCAAACACGACCCCTTTATTGTTTCGAAAGGCAC 1188
|||| |||||| || ||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 1126 GTTAGCAATGAGGT-GCTTCGCCTAG-CAAACACGACCCCTTTGTTGTTTCGAAAGGCGG 1183
Query 1189 TGCACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGTTGGATTGTGGCAGTT 1248
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1184 TGCAAGATGTTGAGATCAAA-G---GATATACAATTCCGGCTGGTTGGATTGTGGCGGTT 1239
Query 1249 GCACCTTCAGCGGTTCATTATGATCCTATAAACTATGAGAACCCATTTGAGTTTAATCCA 1308
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1240 GCACCTTCAGCGGTTCATTTTGATCCTGCAATCTATGAGAACCCATTTGAGTTTAATCCA 1299
Query 1309 TGGAGATGGGAGGGGAAAGAAATGACTCGGGGGTCTAAAACGTTCATGGCGTTTGGA-AG 1367
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
Sbjct 1300 TGGAGATGGGAGGGGAAAGAAATGATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA- 1358
Query 1368 TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTGCGCGGCTTCAAATGGCAATCTTCCT 1424
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1359 TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTTCACGGCTTCAAATGGCAATCTTCCT 1415
Score = 117 bits (63), Expect = 3e-25
Identities = 77/83 (93%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 1432 GATCTGCTTGTAAACATCTCCCAGTCTCCTACCAAGTGAA-C---CATGCAGTTTCCAAA 1487
||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 1498 GATCTGCTTATAAACATCTCTCAGTCTCCTACCAAGTGAACCATGCATGCAGTTTCCAAA 1557
Query 1488 TCTTAATAATCAGATCATTATAT 1510
|||||||||||||||||||||||
Sbjct 1558 TCTTAATAATCAGATCATTATAT 1580
Score = 67.6 bits (36), Expect = 3e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1537 GAGTTCAGCTTTGTTTATATATGTCTTGAATCTGATCACATG 1578
||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1679 GAGTTAAACTTTGTTTATATATGTCTTGAATCTGATCACATG 1720
> AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440
Score = 169 bits (91), Expect = 9e-41
Identities = 224/286 (78%), Gaps = 18/286 (6%)
Strand=Plus/Plus
Query 1131 GTTATCAATGAGTCGCTTCGCCTGTCAAACACGACCCCTTTATTGTTTCGAAAGGCACTG 1190
|||||||||||||| ||||| | ||||| | | ||| | || ||| |||| || |
Sbjct 1030 GTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAAGCGGTA 1089
Query 1191 CACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGTTGGATTGTGGCA-G-TT 1248
| ||||| || |||||| | |||| || ||||| || |||||||| || | | | ||
Sbjct 1090 AAGGATGTGGAAATCAAA-G---GATACACCATTCCAGCAGGTTGGATAGT-G-ATGATT 1143
Query 1249 GCACCTTCAGCGGTTCATTATGATCCTATAAA-CTATGAGAACCCATTTGAGTTTAATCC 1307
|||||||| |||||||| ||||||| ||| |||||| ||||| ||||||||||||||
Sbjct 1144 ATACCTTCAGTGGTTCATTTTGATCCT-GAAATCTATGAAAACCCTTTTGAGTTTAATCC 1202
Query 1308 ATGGAGATGGGAGGGGAAAGAAATGACTCGGG--GG-TCTAAAACGTTCATGGCGTTTGG 1364
||||||||||||||||||||| || | ||| || |||||||||||||||| ||||||
Sbjct 1203 ATGGAGATGGGAGGGGAAAGAGTTG-C--GGGCTGGATCTAAAACGTTCATGGTGTTTGG 1259
Query 1365 AAGTGGAGTTAGACTTTGTG-TAGGTGCAGAGTTTGCGCGGCTTCA 1409
|| ||| |||||| || | | |||||||||||||| |||||||
Sbjct 1260 AACCGGACTTAGACAATGCGCT-GGTGCAGAGTTTGCTAGGCTTCA 1304
> AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708,
subfamily A, polypeptide 1 | chr1:20922459-20925619 REVERSE
LENGTH=2052
Length=2052
Score = 165 bits (89), Expect = 1e-39
Identities = 206/260 (79%), Gaps = 18/260 (7%)
Strand=Plus/Plus
Query 1174 TGTTTCGAAAGGCACTGCACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGT 1233
||||| ||||||| || | ||||| ||||||||||| | ||||||||||| || ||
Sbjct 1574 TGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAGG---G-TATACAATTCCAGCAGGA 1629
Query 1234 TGGATTG---TGGCAGTTGCACCTTCAGCGGTTCATTATGATCCTATAAA-CTATG-AGA 1288
||||||| ||| ||| || | || | |||||||||| ||| ||| ||||| | |
Sbjct 1630 TGGATTGTATTGGTGGTTCCATC-TCTTC--TTCATTATGACCCT-CAAATCTATGAACA 1685
Query 1289 ACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGACT--CGGGGGTCTAA 1346
| |||| |||||||||||||||||||||||||||||||||| || || | || |||||
Sbjct 1686 A-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATTG-CTTTCTGGC-TCTAA 1742
Query 1347 AACGTTCATGGCGTTTGGAAGTGGAGTTAGACTTTGTGTAGGTGCAGAGTTTGCGCGGCT 1406
|||||||||||||||||| |||| | ||||| |||| ||| ||||||||||| ||||
Sbjct 1743 AACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCT 1802
Query 1407 TCAAATGGCAATCTTCCTTC 1426
||| ||||| || || ||||
Sbjct 1803 TCAGATGGCTATATTTCTTC 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5