BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477017
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78530.1 | Symbols: | Protein kinase superfamily protein | ... 1784 0.0
> AT1G78530.1 | Symbols: | Protein kinase superfamily protein
| chr1:29539089-29540709 REVERSE LENGTH=1281
Length=1281
Score = 1784 bits (966), Expect = 0.0
Identities = 1102/1166 (95%), Gaps = 15/1166 (1%)
Strand=Plus/Plus
Query 1 AGAGAAACAATGACTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGTT 60
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 20 AGAAAAACAATGGCTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGCT 79
Query 61 TTTGTCATTGGCAAAATCGTAATCGCTGTTCTTCTCTACAAGAGATGGAAGAGAAAGCAC 120
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 80 TTTGTCATTGGCAAAATCGTAATCGCTCTTCTTTTCTACAAGAGATGGAAGAGAAAGCAC 139
Query 121 ACAGTTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ACAATTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 199
Query 181 CCATTACTTTACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAGCTAAGCAAC 240
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 200 CAATTACTTAACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAACTAAGCAAC 259
Query 241 AAAGACATTCTCGGTTCTGGAGGATATGGAACTGTGTACAGATTAGTCATTGATGATTCA 300
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 260 AAAGACATTCTTGGTTCTGGAGGATTTGGAACTGTGTACAGATTAGTCATTGATGATTCA 319
Query 301 ACTACTTTTGCTGTGAAGAGACTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACTACTTTTGCTGTGAAGAGGCTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 379
Query 361 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTCCACGGCTAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 380 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTTCATGGCTAC 439
Query 421 TTCACTTCTCCACATTACAATCTCCTCATCTATGAGCTCATGCCTAATGGAAGCTTGGAT 480
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 440 TTTACTTCTCCACATTACAATCTTCTCATCTATGAGCTCATGCCTAATGGGAGCTTGGAT 499
Query 481 TCTTTTCTACACGGTAGAAAAGCTTTGGATTGGGCGTCAAGATACAGAATAGCGGTTGGA 540
|||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 500 TCTTTTCTACACGGAAGAAAAGCTTTGGATTGGGCGTCGAGATATAGAATCGCAGTAGGA 559
Query 541 GCGGCTAGAGGGATTTCTTATCTTCATTATGATTGCATCCCTCATATTATCCATAGAGAC 600
||||||||||||||||| || ||||| |||||||||| ||||| |||||||||||||||
Sbjct 560 GCGGCTAGAGGGATTTCGTACCTTCACCATGATTGCATTCCTCACATTATCCATAGAGAC 619
Query 601 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCGGATTTCGGT 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 620 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCTGATTTCGGT 679
Query 661 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTAGCTGGAACATTC 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 680 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTGGCTGGAACATTC 739
Query 721 GGATACTTAGCTCCTGAGTATTTTGATACGGGTAAAGCGACAATGAAAGGAGATGTTTAC 780
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 740 GGATATTTAGCTCCTGAGTATTTCGATACTGGAAAAGCGACAATGAAAGGAGATGTTTAC 799
Query 781 AGTTTCGGTGTTGTTCTTTTGGAGCTTTTAACCGGAAGAAAACCAACAGATGATGAGTTT 840
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 800 AGTTTCGGAGTTGTTCTGTTGGAGCTTTTAACTGGAAGAAAACCAACAGATGACGAGTTT 859
Query 841 TTTGAAGAAGGAACAAAGCTTGTTACTTGGGTAAAAGGAGTGGTGAA-AGACCAAAGAGA 899
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 860 TTCGAAGAAGGAACAAAGCTTGTTACTTGGGTTAAAGGAGTGGT-AAGAGACCAAAGAGA 918
Query 900 AGATGTGGTGATAGATAACCGGTTAAGAGGATCATCGGTTCAAGAGA-TGAA-------- 950
||| ||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 919 AGAGGTGGTGATAGATAACCGATTAAGAGGATCATCGGTTCAAGAGAATGAAGAGATGAA 978
Query 951 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCCATTAGACCAACCAT 1010
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 979 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCAATTAGACCAGCCAT 1038
Query 1011 GACCGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCTTCTTTTTGATG 1070
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1039 GACTGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCCTCTTTTTGATG 1098
Query 1071 TCTCTCTTGTCAATAAAAATAATCAAATTCAGTTCCAAA-TAAAGTTTTGCTGAAGAAAA 1129
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1099 TTTCTCTTGTCAAGAAAAATAATCAAATTCAGTTCCAAAATAAAGTTTTGCTGAAGAAAA 1158
Query 1130 AAGATTTCGAGAT-TCGCTTCTTTGA 1154
| ||||||||||| | ||||||||||
Sbjct 1159 A-GATTTCGAGATCT-GCTTCTTTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5