BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477018
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:295410... 3400 0.0
AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:582484... 645 0.0
> AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:29541011-29544777
REVERSE LENGTH=2478
Length=2478
Score = 3400 bits (1841), Expect = 0.0
Identities = 2066/2173 (95%), Gaps = 21/2173 (1%)
Strand=Plus/Plus
Query 1 CACAAGACGCGACGCCGGAGAGAAAAAGGT-GAGGGATCAACACTTTCGACGATTTTTCA 59
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 32 CACAAGACGCGACGCCGGAGAGAAAAA-GTCGAGGGATCAACACTTTCGACGATTTTTCA 90
Query 60 TTTCTCTTTTTAGCTAATCGATGGGTCTGTA-TTCGTAA-CAATACAAAAAAGAAAAGGG 117
|||||||||||| ||||||||| |||||||| || |||| || | ||||||| | ||||
Sbjct 91 TTTCTCTTTTTAACTAATCGATAGGTCTGTAGTT-GTAACCAGCA-AAAAAAG-AGAGGG 147
Query 118 TTTTCTGGGTTTATAAGGGTTTCGTATAC-AAGTCGAGttttttttttttGGGGTGAAGT 176
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 148 TTTTCTTGGTTTATAAGGGTTTCGTATACAAAGTCGAG-----TTTTTTTGGGGTGAAGT 202
Query 177 AATGGCGGGTGTATCTACAATTGAGACGGAGAAATACT-CTCTGTTGGAAGATTTTAGTG 235
||||||| ||| | |||||||||||||||||||||||| || | || |||||||||| ||
Sbjct 203 AATGGCGAGTGCAGCTACAATTGAGACGGAGAAATACTCCT-TATTAGAAGATTTTAATG 261
Query 236 TCGATGTTGAAGTAGATGATGAAGAATACGAAAGTTTCTCTCTTTGTTTCTGGGTTTATC 295
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 262 TTGATGTTGAAGTAGACGATGAAGAATACGAAAGTTTCTCCCTTTGTTTCTGGGTTTATC 321
Query 296 TTCTTAATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGACATGAGTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTCTTAATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGACATGAGTG 381
Query 356 TTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCCATTGACTC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCCATTGACTC 441
Query 416 TCCTTCACAAGGAAGCTCCTGATCCTGTAGACACTTCTTCCTGGACACAAGTTCCTAGCG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TCCTTCACAAGGAAGCTCCTGATCCTGTAGACACTTCTTCCTGGACACAAGTTCCTAGCG 501
Query 476 TTTCTACAAAATCCAAGTTTCCTCTTCAAAAATGGGTTCATGTGGGTTGTGAGGTTTCTA 535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 TTTCTACAAAATCCAAGTTTCCTCTTGAAAAATGGGTTCATGTGGGTTGTGAGGTTTCTA 561
Query 536 GAAATTTCATGAGGCTTTTTATTGATGGAAATATTGAAGGAGAGCAGTTTGTGACTTCTT 595
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 562 GAAATTTTATGAGGCTTTTTATTGATGGAAATATGGAAGGAGAGCAGTTCGTGACTTCTT 621
Query 596 TGCTGACAAAGAACACCAATCCCGAGTGTCCTCGAAAGATATCGCTATTTAGTGTTGGCG 655
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGCTGACAAAGAACGCCTATCCCGAGTGTCCTCGAAAGATATCGCTATTTAGTGTTGGCG 681
Query 656 GGGATGGTTATAGCGTTCAAGGTTTCATCCAATGTGCACAAGTCTTACCTGCTAGTGATC 715
| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 682 GAGATGGTTATAGCGTACAAGGTTTCATCCAATGTGCAGAAGTCTTACCTGCTAGTGATC 741
Query 716 ATGTTGAGCATCATTATATGAAGGACCCACCTCTATTGTTATCTGTCAATAAATCATCCT 775
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 742 ACGTGGAGCATCATTATATGAAGGACCCACCTCTAATGTTATCTGTCAATAAATCATCCT 801
Query 776 CATCGGGGATCAAATTAGATGAT-GATGGTGTTTGGCAGGCATCTTGCAGGGAGATTTTT 834
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||
Sbjct 802 CATCGGGGATCAAATTAGATGATTG-TGGTGTTTGGCAGGCATCTTGCAAGGAGATGTTT 860
Query 835 TCCTTGGATGTTGTTTTATCCAATGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTT 894
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TCCTTGGATGTTCTTTTATCCAATGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTT 920
Query 895 GTTGCATCACTACTGTATGCCGATACACTTGTGGAGGCCAGGATGAGTGAAGCTGAGGCT 954
|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 921 GTTGCATCACTACTGTATGCCGATACACTTCCGGAGGCCAAGATGGGTGAAGCTGAGGCT 980
Query 955 CCTCTTTTGGTAAGAGATGAAGGAGTTGAATTCTCATCTGGTGATAGACCGATCAAATTA 1014
||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 981 CCTCTTTTGATAAGAGATGAAGGAGTTCAATTCTCATCTGATGATAGACCGATCAAACTA 1040
Query 1015 TTAAACGGACGCTCATCCTTTAAGCTCAAGATCTCTCAGCTTTCCTCCAAGAGTGATAAC 1074
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 1041 TTAAATGGACGCTCATCCTTTAAGCTAAAGATCTCTCAGCTTTCCTCCAATAGTGATGAC 1100
Query 1075 AGATTGTTCTGGATTAAATTTGGAATACGAAATGCTAAAGATTATCCTTTTCTTCAAGCT 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1101 AGATTGTTCTGGATTAAATTTGGAATACGAAATGCTAAAGATTATCCTTTCCTTCAAGCT 1160
Query 1135 GTTTCCAATCCAATCCGTTGCATTTCGATCAGTCCTGATGTCCGGCCACTTTCTGTTACT 1194
||||||||||||||||||||||||||| |||||||||| |||| |||| |||| ||||||
Sbjct 1161 GTTTCCAATCCAATCCGTTGCATTTCGGTCAGTCCTGAAGTCCAGCCAGTTTCAGTTACT 1220
Query 1195 CCGAAAAGGTTGACCAACATTGACCATCTATCAAGTACCGAGTCTCCGGACCTTCTACAT 1254
||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1221 CCGAAAAGGTTGACCAATATTGACCATCTATCAAGTACCGAATCCCCGGATCTTCTACAG 1280
Query 1255 AACGCGTCCTCAGTTAAACGAATCAGGTTGGGCAAAGAAAGTGTTTCGGGGAGCGAGGAA 1314
||| | || ||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1281 AACACTTCGTCAGTTAAACGAATCAGGTTGGGAAAAGAAAGTGTTTCTGGAAGCGAGGAA 1340
Query 1315 TCATATCAACAATGCAACTCTCGTCCCCAAACCTCAAGACAGTTTGAGAATGGAAATGGC 1374
|||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||
Sbjct 1341 TCATATCAACAATGCAACTCTCATCCTCAAACCTCGAGACAGTTTGAGAACGGAAATGGC 1400
Query 1375 ATGAGATTGCACGAAGAAGATAACTCTTCAACTGATTCAGAAAACTCGGAAATGAGATAT 1434
|||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1401 ATGAGATTGCACGAAGAAGATAACTCCTCAATTGATTCAGAGAACTCGGAAATGAGATAC 1460
Query 1435 ACAATCTCAGATTCCACCATCTTTA-GATACTGCCTTGGAAACATAATCGACAAATCTCT 1493
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||
Sbjct 1461 ACAATCTCAGATTCCACCATCTTTAAG-TACTGCCTTGGAAACTTAATCGACAAAGCTCT 1519
Query 1494 ACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTTGCAAATCA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 ACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTTGCAAATCA 1579
Query 1554 GGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCAAGAGAGCT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 GGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCAAGAGAGCT 1639
Query 1614 AATAGCTGAAGGAACAAATGCCTGGATATTGATATCTCGGAACAATCAACATGTTCTTTG 1673
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1640 AATAGCAGAAGGAACAAATGCATGGATATTGATATCTCGGAACAATCAACATGTTCATTG 1699
Query 1674 GGACAATGTGGTCTATGAGATTGAAGAACATTTCATGAGGATTTCAAAATGCAGCAGTAG 1733
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 GGATAATGTGGTCTATGAGATTGAAGAACATTTCATGAGGATTTCAAAATGCAGCAGTAG 1759
Query 1734 ATCACTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCTACGAGTACGT 1793
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1760 ATCTCTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCTACGAGTACAT 1819
Query 1794 AACTCAGGTGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTACTCCATATC 1853
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 AACTCAGGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTACTCCATATC 1879
Query 1854 CCGGGGATTGATAAACGGAATGTGGCGTTCTTCGTCGCCTAAATGGATTGAAGGATTCAT 1913
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1880 CCGGGGCTTGATAAACGGAATGTGGCGTTCTTCATCGCCTAAATGGATTGAAGGATTCAT 1939
Query 1914 CACTAAGGAAGAGGCTGAACATTCGCTTCAAGGCCAAGAACCTGGAACCTTCATACTCCG 1973
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1940 CACCAAGGAAGAAGCTGAACATTCGCTTCAAGGCCAAGAACCAGGAACCTTCATACTACG 1999
Query 1974 TTTCCCTATTTCAAGAATCT-GGCCTCACCCTGATGCTGGTAGTTTGGTTGTGACTTATG 2032
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2000 TTTCCCTATTTCAAGAA-CTTGGCCTCACCCTGATGCTGGTAGTTTGGTTGTGACTTATG 2058
Query 2033 TTGGTCATGATTTCGCTCTTCATCATAAGCAACTCAAGATCGATAACATCTGCGAAAGTA 2092
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 TCGGTCATGATTTCGCTCTTCATCATAAGCAACTCAAGATCGATAACATCTGCGAAAGTA 2118
Query 2093 GTGAAAGGTACATGGATGCAAAACCGCTGCAAGATATGTTGTTGGCTGAACCGGAGCTCT 2152
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2119 GTGAAAGGTACATGGATGCAAAACCGCTGCAGGATATGTTGTTGGCTGAACCTGAGCTCT 2178
Query 2153 CTCGGCTAGGAAG 2165
||||| |||||||
Sbjct 2179 CTCGGTTAGGAAG 2191
> AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:5824848-5828233
FORWARD LENGTH=2394
Length=2394
Score = 645 bits (349), Expect = 0.0
Identities = 624/757 (82%), Gaps = 18/757 (2%)
Strand=Plus/Plus
Query 1428 GAGATATACAATCTCAGATTCCACCATCTTT-AGATACTGCCTTGGAAACATAATC-GAC 1485
||||||| ||||| |||| | | || ||| | |||||||||||||||| ||| | ||
Sbjct 1461 GAGATATTCAATCCCAGACTGGATTAT-TTTCAAATACTGCCTTGGAAACTTAA-CAGAG 1518
Query 1486 AAATCTCTACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTT 1545
| | |||| ||||| ||||||||||||||||| ||||||||||| ||||| | |||||||
Sbjct 1519 AGAGCTCTTCTTCTGAAGGAAATCACAAACAATTCATCAGACGAAGAAGTCTCGGAATTT 1578
Query 1546 GCAAATCAGGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCA 1605
||| |||| |||||||| || || ||||| || ||||| ||||||||||||| ||||||
Sbjct 1579 GCAGATCAAGTTTCTCTCTATTCCGGATGCTCCCACCACGGCTATCAAATCAAAATGGCA 1638
Query 1606 AGAGAGCTAATAGCTGAAGGAACAAATGCCTGGATAT-TGATATCTCGGAACAATCAACA 1664
||| | || ||||| |||||||||||||| |||| || |||| ||||||||| ||| |||
Sbjct 1639 AGAAAACTGATAGCAGAAGGAACAAATGCGTGGA-ATCTGATCTCTCGGAACTATCGACA 1697
Query 1665 TGTTCTTTGGGACAATGTGGTCTA-TGAGATTGAAGAACATTTCATGAGGATTTCAAAAT 1723
||||| ||||||||||||||| | |||||||||||||||||||||||| || | ||||
Sbjct 1698 TGTTCATTGGGACAATGTGGT-AATTGAGATTGAAGAACATTTCATGAGAATAGCTAAAT 1756
Query 1724 GCAGCAGTAGATCACTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCT 1783
||||||||||||| ||||| |||||||||||||| |||||||| || |||| |||||||
Sbjct 1757 GCAGCAGTAGATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGGATATGTGGATGCT 1816
Query 1784 ACGAGTACGTAACTCAGGTGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTT 1843
| || ||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1817 ATGAATACATAACTCAAGAGAATTTTGAGACAATGTGGTGTTGGTTGTTCCCTGTTGCTT 1876
Query 1844 ACTCCA-TATCCCGGGGATTGATAAACGGAATGTGGCGTTCTTCGTCGCCTAAATGGATT 1902
| | |||| |||| ||||| || ||||||||||| ||| | ||||||||||||||
Sbjct 1877 -CGGCTGTATCAAGGGGGTTGATTAATGGAATGTGGCGCTCTGCTTCGCCTAAATGGATA 1935
Query 1903 GAAGGATTCATCACTAAGGAAGAGGCTGAACATTCGCTTCA-AGGCCAAGAACCTGGAAC 1961
||||| || | ||||| |||||||| |||| ||||||||| | | ||| ||| || ||
Sbjct 1936 GAAGGGTTTGTGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATC-AAGTACCGGGCAC 1994
Query 1962 CTTCATACTCCGTTTCCCTATTTCAAGAATCTGGCCTCACCCTGATGCTGGTAGTTTGGT 2021
||||| ||| | ||||||| |||||||| |||||| || ||||| |||||| ||||
Sbjct 1995 TTTCATTCTCAGGTTCCCTACTTCAAGAAGCTGGCCACATCCTGACGCTGGTTCCGTGGT 2054
Query 2022 TGTGACTTATGTTGGTCATGATTTCGCTCTTCATCATA-AGCAACTCA-AGATCGATAAC 2079
|||||||||||| || |||||||| | | ||||||||| | | |||| | ||| | ||
Sbjct 2055 TGTGACTTATGTCGGCCATGATTTAGTTATTCATCATAGATTA-CTCACA-ATCAACCAC 2112
Query 2080 ATCTGCGAAAGTAGTGAAAGGTACATGGATGCAAAACCGCTGCAAGATATG-TTGTTGGC 2138
|||||||| |||||||||||| | |||||||||| | ||||||||||| || |||||
Sbjct 2113 ATCTGCGATTCTAGTGAAAGGTATACAGATGCAAAACAGTTGCAAGATATGCTT-TTGGC 2171
Query 2139 TGAACCGGAGCTCTCTCGGCTAGGAAGGATCATAAGA 2175
||||| ||||| |||||||| |||||||| ||||||
Sbjct 2172 GGAACCTGAGCTATCTCGGCTTGGAAGGATTATAAGA 2208
Score = 588 bits (318), Expect = 9e-167
Identities = 694/865 (80%), Gaps = 68/865 (8%)
Strand=Plus/Plus
Query 335 AGGTTCACTCAGACATGAGTGTTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGA 394
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 449 AGGTTCACTCTGACATGAGTGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 508
Query 395 TGATGCTTTTGCCATTGACTCTCCTTCACAAGGAAGCTCCTGATCCTGT-AGACACTTCT 453
|||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 509 TGATGCTTTTGCCATTGACTCTCCTTCACAGGGAAGCTCCTGATCCTGTTA-ACACTTCT 567
Query 454 TCCTGGACACAAGTTCCTAGCGTTTCTACAAAATCCAAGTTTCCTCTTCAAAAATGGGTT 513
|| ||||| ||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 568 TCTTGGACTGAAGTTCCTAATGTTTCTACAACGGCTAAGTTTCCTCTTCAAAAATGGGTT 627
Query 514 CATGTGGGTTGTGAGGTTTCTAGAAATT-TCATGAGGCTTTTTATT-GATGGAAATATTG 571
|||||||||||||||||||||||||| | | ||| | |||| |||| | |||| | |||
Sbjct 628 CATGTGGGTTGTGAGGTTTCTAGAAACTAT-ATGCGCCTTTATATTTG-TGGAGAGCTTG 685
Query 572 AAGGAGAGCA-GTTTGTGACTTCTTTGCTGACAAA-GA-ACACCAATCCCGAGTGTC-CT 627
||||||||| || | | ||||| ||| |||| || | ||| ||| | || || | |
Sbjct 686 TAGGAGAGCAAGTCT-TAACTTCCTTGATGACCAATGGTACA--AATTCAGATTG-CGCA 741
Query 628 CGAAAGATATCGCTATTTAGTGTTGGCGGGGATGGTTATAGCGTTCAAGGTTTCATCCA- 686
|||||||||||| ||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 742 CGAAAGATATCGTTATTTAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCAC 801
Query 687 ATGTGCACAAGTCTTACCTGCTAGTGATCATGTTG-A-GC-ATCATTATATGAAGGACCC 743
| ||||| |||| || ||| ||| | || | | | | | |||| || | ||||||||
Sbjct 802 A-GTGCAGAAGTTTTGCCTTCTAATC-TC-TCT-GCAAGTTATCACTACACAAAGGACCC 857
Query 744 ACCTCTATTGTTATCTGTCAATAAATCATCCT-CATCGGGGATCAAATTAGATGATGATG 802
|||| ||| ||||||||| |||| |||| | |||| || || |||| ||||| ||||
Sbjct 858 ACCTTTATGGTTATCTGTTGATAAGCCATC-TACATCTGGAATTGAATTGGATGAAGATG 916
Query 803 GTGTTTGGCAG-GCATC-TTGCAG-GGAG-ATTTT-TTCCTTGGATGTTGTTTTATCCAA 857
|||||||| || | || || || ||| ||||| ||||||||||||||||||| ||||
Sbjct 917 GTGTTTGG-AGTG--TCGTT--AGTGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAA 971
Query 858 TGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTTGTTGCATCACTACTGTATGCCGA 917
||| ||||| ||||||||||||||||||||| ||||||| || || ||||||||||| ||
Sbjct 972 TGCTATTGGACAGCCTGTGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGA 1031
Query 918 TAC----ACT--TGTGGAGGCCAGGATGAGTGAAGCTGAGGC-TCCTCTTTTGGTAAGAG 970
|| || ||| ||| || | |||||| |||||| | | ||||| |||||
Sbjct 1032 TAGTGGGACGCATGTTGAGA--AG-AGGAGTGACTTTGAGGCATTC-CTTTTAGTAAGCT 1087
Query 971 ATGAAGG-AGTTGAATTCTCAT-CTGGTGATAGACCGAT-CAAATTATTAAACGGACGCT 1027
||||||| | ||||||| || | ||| |||| |||| | ||| ||||| |||||| | |
Sbjct 1088 ATGAAGGCA-TTGAATTATC-TGCTGAAGATAAACCG-TGCAACTTATTGAACGGATG-T 1143
Query 1028 -CATCCTTT-AAGCTCAAGATC-TCTCAGCTTTCCTCCAAGAGTGATAACAGATTGTTCT 1084
| || ||| ||| |||| || ||||||||||| |||||||||||||| || |||||||
Sbjct 1144 GCTTC-TTTCAAGTTCAA-ATTATCTCAGCTTTCTTCCAAGAGTGATAAGAGGTTGTTCT 1201
Query 1085 GGATTAAATTTGGAATACGA-AATGCTAAAG---A-TTATCCTTTTCTTC-AAGCTGTTT 1138
| || ||||| | ||||| | || | | ||| | ||||||||| || | || ||||
Sbjct 1202 GCATCAAATTCGAAATACCAGAA-G-TGAAGGCCAATTATCCTTTCCT-CGAAACTGTCA 1258
Query 1139 CCAATCCAA-TCCGTTGCATTTCGA 1162
|||| |||| |||||||||||||||
Sbjct 1259 CCAA-CCAAATCCGTTGCATTTCGA 1282
Score = 73.1 bits (39), Expect = 1e-11
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1384 CACGAAGAAGATAACTCTTCAACTGATTCAGAAAACTCGGAAATGAGA 1431
||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1396 CACGAAGAAGATAACTCTTCAACTGATTCCGAAAACACTGAAATGAGA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115009448595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5