BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477019
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78550.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1855 0.0
> AT1G78550.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:29544927-29546487
REVERSE LENGTH=1302
Length=1302
Score = 1855 bits (1004), Expect = 0.0
Identities = 1188/1275 (93%), Gaps = 19/1275 (1%)
Strand=Plus/Plus
Query 19 TTCGATTTTTGTTCGttttttttttGCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 78
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 33 TTCAATTTTTGTTCGTTTTTTTCTTCCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 92
Query 79 GAGATTTG---TTCTGTTTTGGTGCTACAAAGTCC-ATGGAGGCCCAAGGAGAAGAAAGA 134
|||||||| || |||| ||||||||| |||||| |||||||| |||||| | ||| |
Sbjct 93 GAGATTTGTACTTTTGTTCTGGTGCTAC-AAGTCCAATGGAGGCGGAAGGAG-A-AAA-A 148
Query 135 CAGTGGAGTTCTCTCATAGTACCTTCTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 194
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 149 CAGTGGAGTTCTCTCATAGTACCTTTTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 208
Query 195 ACTGTTCCTCCGAGATATGTTCGACCTGATCAAGGAAAAACTGAGATCTTAAATGATTCT 254
||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 209 ACTATTCCTCCGAGGTATGTTCGGGTTGATCAAGAAAAAACTGAGATCTTAAATGATTCT 268
Query 255 AGTCTTAGTTCTGATATTCCAGTCATCGACATGAAACGGTTGTGTTCTGTTTCCGCCATG 314
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 269 AGTCTTAGTTCTGAGATTCCAGTCATCGACATGACACGGTTGTGTTCTGTTTCCGCCATG 328
Query 315 GATTCCGAGCTCAAGAAGCTCGATTTCGCTTGCCAAGATTGGGGATTTTTTCAACTGGTG 374
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 329 GATTCCGAGCTCAAGAAGCTGGATTTCGCTTGCCAAGATTGGGGATTTTTTCAATTGGTA 388
Query 375 AACCATGGAATAGACTCGTCTTTCTTGGAAAAATTAGAGACAGAGGTTCAAGAATTCTTC 434
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 389 AACCATGGAATAGACTCGTCTTTCTTGGAAAAACTAGAGACAGAAGTTCAAGAATTCTTC 448
Query 435 AATCTCCCTATGGAAGAGAAGCAGAAGCTGTGGCAGAGAAATGGTGAATTTGAAGGATTC 494
|||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 449 AATCTCCCTATGAAAGAGAAGCAGAAGTTGTGGCAGAGAAGTGGTGAATTTGAAGGATTT 508
Query 495 GGACAAGTGAACATTGTCTCGGAGGATCAAAAACTTGACTGGGGAGACATGTTCATCCTC 554
|||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||
Sbjct 509 GGACAAGTGAACATTGTCTCGGAGAATCAGAAACTCGATTGGGGAGACATGTTTATCCTC 568
Query 555 ACCACTGAACCAATTCGGTCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTTCTTTC 614
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 569 ACCACTGAACCAATTCGATCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTCCTTTC 628
Query 615 AGAGAAACTTTAGAGACTTACTCCTCTCAAGTGAAGAGCATAGCTAAGATTCTTTTTGCG 674
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 629 AGAGAAACTTTAGAGACTTACTCCTCTGAAGTGAAGAGCATAGCTAAGATTCTGTTTGCG 688
Query 675 AAAATGGCGAGTGTTCTTGAGATCAAACGCGAAGAAATGGAAGATTTGTTCGAGGATGTT 734
||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||
Sbjct 689 AAAATGGCGAGTGTTCTAGAGATCAAACACGAAGAAATGGAAGATTTGTTTGATGATGTT 748
Query 735 TGGCAATCTATCAAGATTAATTACTACCCACCATGTCCACAACCAGATCAAGTTATCGGT 794
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 749 TGGCAATCTATCAAGATTAATTACTACCCGCCATGTCCACAGCCAGATCAAGTTATGGGT 808
Query 795 TTGACTCCACATTCAGACGCTGCAGGTCTCACAATACTATTACAGGTGAATCAAGTGGAA 854
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 809 TTGACTCAACATTCAGACGCTGCAGGTCTCACAATACTCTTACAGGTGAATCAAGTGGAA 868
Query 855 GGACTTCAGATCAAGAAACACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 914
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GGACTTCAGATCAAGAAAGACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 928
Query 915 GTTGTTAATGTTGGAGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GTTGTTAATGTTGGCGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 988
Query 975 CATAGAGCAGTGGTGAATTCAGAAAAAGAGAGGTTATCGGTTGCGGTATTTCATAGTCCG 1034
|||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 989 CATAGAGCGGTGGTGAATTCAGAGAAAGAGAGGTTATCGGTTGCGATGTTTCATAGTCCC 1048
Query 1035 GGAAAGGAGACAGTAATTGGTCCGGCGAAAAGCCTTGTAGATAGGCAGAAGCAAAGCTTG 1094
|||||||||||| | ||| |||| |||||||||||||||||||||||||||||| | |||
Sbjct 1049 GGAAAGGAGACAATCATTCGTCCTGCGAAAAGCCTTGTAGATAGGCAGAAGCAATGTTTG 1108
Query 1095 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTGCTCAGAAACTCAATGGA 1154
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1109 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTACTCAAAAACTCAATGGG 1168
Query 1155 AAATCTCACCTTGATCTTATGCGTATTTAAGGACAA-GACCCTCATAAAACATGTAGACC 1213
||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
Sbjct 1169 AAATCTCACCTTGATCTTATGCGTATTTAAGGAAAAAGACTCTCATAAAACATGTTT-CT 1227
Query 1214 TCGTAAATTTGTAATTAAGAGAAATCAT--AT-TT--T----GTCATTAAAGACATTAAT 1264
|||||| ||||||||||||||||||| | || || | ||||||||||||||||||
Sbjct 1228 TCGTAATTTTGTAATTAAGAGAAATCTTTCATCTTGCTTCTTGTCATTAAAGACATTAAT 1287
Query 1265 ACATACGCTCTAATT 1279
||| ||||| |||||
Sbjct 1288 ACACACGCTTTAATT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5