BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477021
Length=2423
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthes... 3877 0.0
AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate syn... 150 5e-35
> AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis
1 | chr1:29549649-29552438 FORWARD LENGTH=2463
Length=2463
Score = 3877 bits (2099), Expect = 0.0
Identities = 2309/2409 (96%), Gaps = 20/2409 (1%)
Strand=Plus/Plus
Query 25 ttttttGAATTTTGA---ttcttcttctccgcttctttcgcttcttcctcagcttcttca 81
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 65 TTTTTTGAATTTTGATTCTTCTTCTTCTCCGTTTCTTTCGCTACTTCCTCAGCTTCGTCA 124
Query 82 ccgtc-aaaagttcttcaCATTTT-CTCGGAATTTTCCAGTTATCTTC-CCAAAATTCTC 138
||||| |||| |||||||| |||| |||||||||||||| || ||||| || |||||||
Sbjct 125 CCGTCGAAAA-TTCTTCACGTTTTCCTCGGAATTTTCCAATTGTCTTCTCC--AATTCTC 181
Query 139 TTGCTAACGTTGAAGATCTGAAAAATTCAAAGCGTTTAATCATGGCTTCGTACACTCCCA 198
|||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 182 TTGCGATCGTTGAAGATCTGAAAAATTCGAAGCGTTTGATCATGGCTTCGTACACTCCCA 241
Query 199 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCTTCACATGTAGCCAACAGACTCA 258
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 242 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGACTCA 301
Query 259 TACGAAGCTATCCTGATTACAACATCGTTGTGCTTGACAAACTTGATTACTGTTCAAATC 318
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 302 TACGAAGCTATCCTGATTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTCAAATC 361
Query 319 TCAAGAATCTCAATCCTTCTAAACAGTCTCCGAATTTCAAGTTTGTCAAAGGTGATATCG 378
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 362 TCAAGAATCTCAATCCTTCTAAGCACTCTCCGAACTTCAAGTTTGTCAAAGGTGATATCG 421
Query 379 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATCGACACCATCATGCATT 438
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATTGACACCATCATGCATT 481
Query 439 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 541
Query 499 ATATCTATGGAACTCATGTGCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 558
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATATCTATGGAACTCATGTCCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 601
Query 559 TTATTCATGTCAGTACTGATGAGGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 618
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 602 TTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 661
Query 619 ACCATGAGGCTTCTCAGCTACTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCGG 678
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 662 ACCATGAGGCTTCTCAGCTGCTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCTG 721
Query 679 AGATGCTTGTTATGGCTTATGGTAGGTCTTATGGGTTGCCTGTTATTACCACACGTGGGA 738
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 722 AGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACCACTCGTGGGA 781
Query 739 ACAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTAATTCCTAAGTTCATTTTGCTGG 798
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 782 ATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTCATTTTGCTGG 841
Query 799 CAATGAGAGGGCAAGTTCTTCCCATTCATGGAGATGGGTCAAATGTCAGGAGCTACCTGT 858
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 842 CAATGAGAGGGCAGGTTCTTCCCATTCATGGAGATGGATCAAATGTCAGGAGCTACCTCT 901
Query 859 ACTGTGAAGATGTTGCTGAGGCTTTTGAAGTTATTCTGCACAAGGGAGAAGTTGGCCATG 918
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 902 ACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAAGGGAGAAGTTGGCCATG 961
Query 919 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTCAATGATGTTGCCAGAGATATCTGCA 978
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 962 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTGAATGATGTTGCCAAAGACATCTGCA 1021
Query 979 AACTCTTCAGCATGGACCCTGAGGCGAACATCAAGTTTGTCGAGAACAGACCTTTTAACG 1038
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1022 AACTCTTCAACATGGACCCTGAGGCGAACATCAAGTTTGTCGACAACAGACCTTTTAACG 1081
Query 1039 ATCAAAGGTACTTTCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGGACCA 1098
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 ATCAGAGGTACTTCCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGAACCA 1141
Query 1099 CTTGGGAAGAAGGGTTGAAGAAAACTATGGAATGGTACACACAGAACCCGGAGTGGTGGG 1158
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1142 CGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACACAGAACCCGGAGTGGTGGG 1201
Query 1159 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGTTGATGATGCCTGGCGGGCGAC 1218
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1202 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGCGAC 1261
Query 1219 ACTTTGATGGCTCGGAGGACAATTCTCTGGCAGCTACTTTATCAGAGAAACCAAGTCAAA 1278
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1262 ACTTTGATGGCTCCGAGGACAATTCGCTGGCAGCTACTTTATCTGAAAAACCAAGTCAAA 1321
Query 1279 CCCATATGGTTGTTCCAAGCCCAAGGAGCAACGGCACACCGCAAAAGCCTTCGCTGAAGT 1338
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1322 CCCATATGGTTGTTCCAAGCCAAAGGAGCAACGGCACACCTCAAAAGCCTTCGCTGAAGT 1381
Query 1339 TCTTGATATATGGAAAGACCGGATGGATTGGTGGTCTGCTTGGAAAGATATGTGAGAAGC 1398
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1382 TCCTGATATATGGAAAGACCGGATGGATCGGTGGTCTGCTTGGAAAGATATGTGATAAGC 1441
Query 1399 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCATCTCTTCTGCAGG 1458
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1442 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCTTCTCTTCTGCAGG 1501
Query 1459 ATATTCAGAGCGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACCGGGAGACCCA 1518
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1502 ATATTCAGAGTGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACTGGGAGACCCA 1561
Query 1519 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1621
Query 1579 TGACTCTAGCTGATGTCTGCAGAGAGCATGGACTCCTGATGATGAATTTCGCTACTGGTT 1638
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1622 TGACTCTAGCTGATGTCTGCAGAGAGCACGGACTCCTAATGATGAATTTCGCTACTGGTT 1681
Query 1639 GTATATTCGAATATGACGACAAGCATCCAGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1698
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1682 GTATATTCGAATATGACGACAAGCATCCGGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1741
Query 1699 ACACCCCCAACTTCACTGGCTCTTTTTACTCAAAAACCAAAGCCATGGTTGAGGAGCTGC 1758
|||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1742 ACACACCCAACTTCACTGGCTCTTTCTACTCGAAAACCAAAGCCATGGTCGAGGAGCTGC 1801
Query 1759 TAAAAGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1818
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 TAAAGGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1861
Query 1819 ACAACCCGCGCAACTTTATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1878
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 ACAACCCGCGCAACTTCATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1921
Query 1879 ACAGCATGACTGTGTTGGACGAGCTT-TTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1937
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1922 ACAGCATGACTGTGTTGGACGAG-TTATTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1980
Query 1938 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 2040
Query 1998 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCGAACTTCACATTAGAGGAGCAA 2057
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2041 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCAAACTTCACATTAGAGGAGCAA 2100
Query 2058 GCTAAAGTCATTGTGGCACCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2117
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GCTAAAGTCATTGTGGCTCCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2160
Query 2118 GAGTTCCCTGAGCTACTCTCTATTAAGGAGTCTCTGATTAAGTATGCATTCGAGCCAAAC 2177
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 2161 GAGTTCCCTGAGCTACTCTCTATCAAGGAGTCTCTGATTAAGTATGCATACGGGCCAAAC 2220
Query 2178 AAGAAAACCTGAAGAGAGAAAGATTGTGATTCGTCATTAGATTAATCATCTTTAATATCA 2237
||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||
Sbjct 2221 AAGAAAACCTGAAGAGA-AT-GATTGTGATTCGTCATTAGAT-AATCACCTTTAATATCA 2277
Query 2238 GTTTCGTTTATTT-GTTTTGTTATTTGTTTAATTACCCCTTGTTTCATTAGATTTGCTTA 2296
||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2278 GTTTCGTGTATTTTGTTTTGTTATT-GTTTAATTACCCCTTCTTTCATTAGATTTGCTTA 2336
Query 2297 -GGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCACAATTT-TGTCA 2354
|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 2337 AGGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCTCA-TTTGTGTCA 2395
Query 2355 TAAGTTGCTCTACTCTTATTTTATAAGAATCAAACCACTAAAAGAGTCTGGTAATGGCTG 2414
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 2396 TAAGTTGCTCTACTCTTATTATATTAGAATCAAACCACTAAA-GAGTCTGGTAATGGCTG 2454
Query 2415 CTTTTTGTT 2423
|||||||||
Sbjct 2455 CTTTTTGTT 2463
> AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase
| chr1:29552340-29560912 REVERSE LENGTH=3190
Length=3190
Score = 150 bits (81), Expect = 5e-35
Identities = 95/101 (94%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 2324 ATGTAATAAGAGCTTGTTCACAATTT-TGTCATAAGTTGCTCTACTCTTATTTTATAAGA 2382
||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| |||
Sbjct 3190 ATGTAATAAGAGCTTGTTCTC-ATTTGTGTCATAAGTTGCTCTACTCTTATTATATTAGA 3132
Query 2383 ATCAAACCACTAAAAGAGTCTGGTAATGGCTGCTTTTTGTT 2423
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 3131 ATCAAACCACTAAA-GAGTCTGGTAATGGCTGCTTTTTGTT 3092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120330706365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5