BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477023
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78590.1 | Symbols: NADK3, ATNADK-3 | NAD(H) kinase 3 | chr1... 1755 0.0
> AT1G78590.1 | Symbols: NADK3, ATNADK-3 | NAD(H) kinase 3 | chr1:29564249-29566375
FORWARD LENGTH=1295
Length=1295
Score = 1755 bits (950), Expect = 0.0
Identities = 1131/1215 (93%), Gaps = 25/1215 (2%)
Strand=Plus/Plus
Query 1 GAGATTGATTCAGCGAGAATGGCGATCAGGAAGCTTTTGCTTCTATTGAAACCGATTGAT 60
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 77 GAGATTGATTCAGCGACAATGGCGATTAGGAAGCTTTTGCTTCTTTTGAAACCGATTGAT 136
Query 61 CCGTACCCATTTCTACAAACCGAAGGTTCATCGCTCATCAAAAATCCCCAGGTTCTTAAA 120
||||||||||| || ||||| |||||| ||||||||||||||||||| ||||||||| ||
Sbjct 137 CCGTACCCATTCCTTCAAACAGAAGGTGCATCGCTCATCAAAAATCCTCAGGTTCTTCAA 196
Query 121 TATCTGGAAAGCAGGTGCAAAGTACACAGGAATGCTATTAA-TTTCTGTCAGGAAATACT 179
||||| |||||||||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct 197 TATCTAGAAAGCAGGTGCAAAGTACACAAGAATGCTATCAAGTTT-TGTCAGGAAATACT 255
Query 180 AAGTAAGAAGCCTGTCGAGTGGAAACCCATTTCACGTAACGACTTATCCCATCCCATTCG 239
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 256 AAGTAAGAAGCCTGTTGAGTGGAAACCCATTTCACGTAACGACTTATCGCATCCCATTCG 315
Query 240 TGATGTGGATATGGTCATCACCGTGGGTGGAGACGGCACCCTCTTGCATGCCAGTCATTT 299
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 316 TGATGTTGATATGGTCATCACCGTGGGTGGAGACGGTACCCTCTTGCATGCCAGTCATTT 375
Query 300 CATCGATGATTCTGTTCCGGTTCTAGGAGTCAATTCTGACCCAACACAAGCTCAGGAGGT 359
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 376 CATTGATGACTCTGTTCCGGTTCTAGGAGTCAATTCTGACCCAACACAAGCTCACGAGGT 435
Query 360 AGAAGAACTGAGCGATCAGTTTGACGCTAGTAGAAGTACTGGTCATCTTTGTGCTGCAAC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CGAAGAACTGAGCGATCAGTTTGACGCTAGTAGAAGTACTGGTCATCTTTGTGCTGCAAC 495
Query 420 CGTTAATAATTTTGAACAGGTGCTGGATGACATTTTGTTTGGCAGAGTGGTTCCTTCTAA 479
|| | |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 496 TGTCGAGAATTTTGAACAGGTGCTGGATGACATTTTGTTTGGCAGAGTGGTTCCTGCAAA 555
Query 480 AGTTTCCAGAATATCATTGAAGTTAAATTCAG-AACTTCTTCTTTCACATGCACTTAATG 538
||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 556 AGTATCGAGAATATCATTGAAGTTAAATTCAGAAAC-TCTTCTTTCACATGCACTTAATG 614
Query 539 ACATTTTGATCGCACACCCATGCCCTGCCGCGGTTTCAAGGTTCTCATTCAAGATTAAGA 598
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 615 ACATTTTGATCGCACAGCCATGCCCTGCTGCGGTTTCAAGGTTCTCTTTCAAGATTAAGA 674
Query 599 ACAAAAATGGTGAGAGCAGTCCAAAGACAGTGAACTGCCGGTCAAGTGGTCTAAGAATCT 658
||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 675 ACAAAGATGGTGCGAGCAGTCCAAAGACAGTGAACTGCCGCTCAAGCGGTCTAAGAATCT 734
Query 659 GCACAGCTGCTGGCTCAACTGCCGCAATGCAGTCAGCAGGTGGGTTCGTGATGCCAATGT 718
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 735 GCACAGCTGCTGGTTCAACTGCAGCAATGCAGTCAGCAGGTGGGTTCGTGATGCCAATGT 794
Query 719 TGTCTCGTGATCTACAATTCATGGTTAGAGAGCCAATCTCTCCTGGTTCAACTGCTCCTT 778
|||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 795 TGTCTCGTGATCTACAGTTCATGGTTAGAGAGCCAATATCTCCTGGTTCAACCGCTTCGT 854
Query 779 TAATGCATTCTG-CCTTCAAAACGGACCAGTTCATGGATGTTAACTGGTATTCAGACCAT 837
|||||||||| | |||||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct 855 TAATGCATTC-GACCTTCAAACCAGACCAATTCATGGACGTTAACTGGTATTCAGACCAC 913
Query 838 GGGACTATATACATCGACGGTTGTCAGGTTCAACACAGCGTGCAGCTCGGAGATACAATC 897
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGGACTATCTACATCGATGGTTGTCAGGTTCAACACAGCGTGCAGCTCGGAGATACAATC 973
Query 898 GAGATATCATCGGATGCGCCGGTCTTAAACGTTTTCTTGTCTCACGGCATTTCTCAGATC 957
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 974 GAGATATCATCGGATGCGCCAGTCTTAAACGTTTTCTTGTCACACGGCATATCTCAGATC 1033
Query 958 AAATCAAGGTACTAGAATTGGTACAATGGTAGATTT-GTTCATAAAGTTAAGAGTTGGTA 1016
| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1034 AGATCAAGGTACTAGAATTGGTACAATGGTAGATTTTGTTCATAAAGTTA-GAGTTGGTA 1092
Query 1017 CACATTGATAGCCGTTTTAGCCCACTTGTCTATAGATATGGTTATAAAAGATTCTTTGGT 1076
|||||| | || ||||||||||||| |||||||||| | ||| ||||| |||||
Sbjct 1093 CACATT-A-AG-------AGCCCACTTGTCTGTAGATATGGT-A-AAA-GATTCCTTGGT 1140
Query 1077 CCGAAAGATTCGTTGATTCTTGAATCTTTGGTGCTTGAAGAAGTTTAATTCGAGTAGCTA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 CCGAAAGATTCGTTGATTCTTGAATCTTTGGTGCTTGAAGAAGTTTAATTCAAGTAGCTA 1200
Query 1137 TCTTTCTCCTCCTACCAAGAACGTGGATGTGTCTGATCCTCTTAAATAAAA-TTCATATA 1195
|||||||||| ||||||||||||||||||||| |||||||| ||||||| || ||||
Sbjct 1201 TCTTTCTCCT---ACCAAGAACGTGGATGTGTCTAATCCTCTTGAATAAAACTT-ATATT 1256
Query 1196 TAAAGAAAAATAATA 1210
|||||||||||||||
Sbjct 1257 TAAAGAAAAATAATA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5