BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477027 Length=1895 Score E Sequences producing significant alignments: (Bits) Value AT1G78620.2 | Symbols: | Protein of unknown function DUF92, tr... 1943 0.0 > AT1G78620.2 | Symbols: | Protein of unknown function DUF92, transmembrane | chr1:29572871-29575794 REVERSE LENGTH=2056 Length=2056 Score = 1943 bits (1052), Expect = 0.0 Identities = 1396/1549 (90%), Gaps = 76/1549 (5%) Strand=Plus/Plus Query 1 TCTTCGGAAGGAAGCTAAGTCATGGCAACGATTTCGTCTAGTCTACTACTCTTAAATTCT 60 |||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 16 TCTTCGGAAGCAAGCTAAGTCATGGCAACGATTTCGTC-A-ACT-CTACTCTTAAATTCT 72 Query 61 TCTAGATCAG-TTTCACCTCTGAGATTCCCAAAATTCTCGGGATTTTCTTCTT-CTGCTC 118 |||||||||| ||| ||| || ||||||||||||||||||||||||||||||| || ||| Sbjct 73 TCTAGATCAGCTTT-ACCACTAAGATTCCCAAAATTCTCGGGATTTTCTTCTTCCT-CTC 130 Query 119 CATTCGCTAGATCTTGCCGATTTGGACGACGTAATCTGGAACCCCTTTCCAACGGAATGC 178 ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct 131 CATTCGCTAGATCTTACAGATTTGGACGACGTAATCTGGAACCACTTTCCAACGGAATGC 190 Query 179 TTTCGTCGGGAAGCAGAGCCGACGGTGCCACGGTGGCGGCTGCATCGATGGAAGGTGTGA 238 ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||| Sbjct 191 TTTCGTCGGGAAGTAGAGCCGACGGTGCTACGGCGGCGGCTGCATCGATGGAAGGAGTGA 250 Query 239 TGACGGAGGCGATGAAGCTGATTCAATCGGCGTCTCCAACCTGGAAATCAGCCGTGGCTA 298 |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 251 TGACGGAGGCGATGAAACTGATTCAATCGGCGTCACCAACTTGGAAATCAGCTGTGGCTA 310 Query 299 ACAATTTGTTGATATTTGTTCTCGGTTCACCGCTTCTTGTTACTGGATTGTCTGCTTCTG 358 ||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 311 ACAATTTATTGATTTTTGTTCTCGGTTCACCGCTTCTTGTTACCGGATTGTCCGCTTCTG 370 Query 359 GGATCGCCGCCGCGTTTTTGCTCGGTACTTTAACTTGGCGAGCTTATGGCTCTGCTGGTT 418 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 371 GGATCGCCGCCGCGTTTTTGCTTGGTACTTTAACTTGGAGAGCTTATGGCTCTGCTGGTT 430 Query 419 TCCTCTTAGT--C-G----C-T-G-C-T--T-A---C--TT-CG-TC-A--T--A-GGAA 451 |||||||||| | | | | | | | | | | || | || | | | |||| Sbjct 431 TCCTCTTAGTCGCTGCTTACTTCGTCATAGTAAGTGCATTTGTGATCAACCTGAATGGAA 490 Query 452 CAGCGGCAACAAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 511 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 CAGCGGCAACGAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 550 Query 512 AAGGCAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 571 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 AGGGTAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 610 Query 572 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 670 Query 632 TTTCCAGTTTCTGCACTAAAGTGTCTGACACCGTCTCAAGTGAGATAGGCAAAGCTTATG 691 |||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||| Sbjct 671 TTTCCAGTTTCTGCACTAAAGTATCTGACACTGTCTCGAGCGAGATAGGCAAAGCTTATG 730 Query 692 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACCGAGGGAGCTA 751 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 731 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACAGAGGGAGCTA 790 Query 752 TGAGTATTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 811 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TGAGTCTTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 850 Query 812 GTTTCCTGGGTCAGATAACCCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 871 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 851 GCTTCCTGGGTCAGATAACTCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 910 Query 872 CCAATCTTGGAGAAAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 931 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911 CCAATCTTGGAGAGAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 970 Query 932 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATCGTAGCGATTTTGA 991 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 971 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATTGTGGCGATTTTGA 1030 Query 992 TGCAACAGTTTATACTCCAGAATTGGGTCAAGTAAAACCTGTCACGAAGGTCATGTCTTC 1051 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| Sbjct 1031 TGCAACAGTTTATACTCCAGAACTGGGTCAAGTAAAACCTGCCACGAAGGTCATGTATTC 1090 Query 1052 TCAGTGAGGTTAGAttttttttctttcttttttCTATTGTTAAACAC--C-TTACGTATT 1108 |||||||||||||||| |||| |||| | |||||||||||| | ||||||||| Sbjct 1091 TCAGTGAGGTTAGATT------CTTT-TTTTAT--ATTGTTAAACACAGCCTTACGTATT 1141 Query 1109 CAGTTGTGTTGTAAATTACACTCTGTTGTGTACAATTAGTAGTCCAACATCAATGAGGGG 1168 |||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 1142 CAGTGGTGTTATAAATTATACTCTGTTGTGTACAACTAGTAGTCCAACATCAATGAGGGG 1201 Query 1169 ATATATAAACTTCTGGAACCCTTGTCTAACAATTATTGGATGATATGAATTTGAATTAAG 1228 | | | |||||||||| ||| ||||||| ||||||||||||||||| || ||||||||| Sbjct 1202 A-A-A-AAACTTCTGGGACCATTGTCTAGCAATTATTGGATGATATTTATGTGAATTAAG 1258 Query 1229 TCCACCTTTGAAATTGTCCCGTAGATAGAGAGACTTTTAAAATCTCATAAATCT-CTT-G 1286 | |||||| |||||||||||||||||||| |||| |||||| || | ||| ||| | Sbjct 1259 TTTGCCTTTGCAATTGTCCCGTAGATAGAGAAACTTATAAAATTTC-T---TCTGCTTAG 1314 Query 1287 --ATCCATTCACTTGATCTCTTCCACTTCCTTCACATGAAATCCAAACTCTATTGCGACA 1344 |||||||||| |||| ||||| | |||||||||||||| |||||| |||||||||||| Sbjct 1315 GGATCCATTCACGTGATTTCTTCTATTTCCTTCACATGAAGTCCAAATTCTATTGCGACA 1374 Query 1345 TCAGAAATTGAAGAA-ACTGTaaaaaaaaTACAGGTAG-AAAGTAGAGGAAGTAGTGATG 1402 ||| ||||||||||| | |||||||||| | | |||| ||| ||||| ||||||||||| Sbjct 1375 TCATAAATTGAAGAACA-TGTAAAAAAAGTT-ATGTAGCAAA-TAGAGAAAGTAGTGATG 1431 Query 1403 TAAATGTAAGAAAAA-G---G---------CAACAACAAAGTATCAAAAATTGGTTGAGA 1449 |||||||||||||| | | ||||||||||||| ||| |||||||||||| Sbjct 1432 AAAATGTAAGAAAAAAGTTTGAAGAAAAGGCAACAACAAAGTACCAAGAATTGGTTGAGA 1491 Query 1450 AAGAAGTAGaaaaaaaGGTCGTGATTTTCTCGAATACATTCTTCCTTTT 1498 ||||||| | || || |||||||||||||||||||||||||| |||| Sbjct 1492 AAGAAGTCGTCGAAGAG-TCGTGATTTTCTCGAATACATTCTTCTTTTT 1539 Score = 224 bits (121), Expect = 2e-57 Identities = 230/277 (83%), Gaps = 29/277 (10%) Strand=Plus/Plus Query 1499 ATATTCTCGTCGTTGCGTAAGATAATGTTTCTGGTGGCCAATTTTAATTTAGATGCCTCT 1558 ||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1576 ATATTCTCGACGTTGCATAAGATAGTGTTTCTGGTGGCCAATTTTAATTTAGAAGCCTCT 1635 Query 1559 AGAGAAATAAAACTAAGCATCAATCGGCCTAGCTGTTATACA-G-C-G--AGACTTAACA 1613 ||||||| || | ||||| |||||||||||||||| ||| | | | |||||||||| Sbjct 1636 AGAGAAA-AA---T--GCATCCATCGGCCTAGCTGTTAAACAAGACAGCGAGACTTAACA 1689 Query 1614 GGCCTGCT-ACTTT-A-A---A-GA----TGAAGAAAATTTATACAATGCGTTGCTTTTA 1662 ||| || | ||||| | | | || ||||||||| |||||||||||||||||| || Sbjct 1690 GGCTTGTTTACTTTTAGACTTATGAAACATGAAGAAAAATTATACAATGCGTTGCTTCTA 1749 Query 1663 CGAACCTTTGTGGTCCGCTATACGATACGACGATGGCCCATGGGCCGCGACATTTGTCTA 1722 ||||||| ||||||||| ||| |||||||| |||||||||||||||| |||| |||||| Sbjct 1750 CGAACCT--GTGGTCCGCAATAAGATACGACAATGGCCCATGGGCCGCAACATCTGTCTA 1807 Query 1723 ATACA--GCTGACAAGTGACAAC---CACACGCGCTC 1754 | ||| ||||||||||| ||| ||||||||||| Sbjct 1808 ACACACAGCTGACAAGTGTCAAAATTCACACGCGCTC 1844 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93824818605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5