BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477027
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78620.2 | Symbols: | Protein of unknown function DUF92, tr... 1943 0.0
> AT1G78620.2 | Symbols: | Protein of unknown function DUF92,
transmembrane | chr1:29572871-29575794 REVERSE LENGTH=2056
Length=2056
Score = 1943 bits (1052), Expect = 0.0
Identities = 1396/1549 (90%), Gaps = 76/1549 (5%)
Strand=Plus/Plus
Query 1 TCTTCGGAAGGAAGCTAAGTCATGGCAACGATTTCGTCTAGTCTACTACTCTTAAATTCT 60
|||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 16 TCTTCGGAAGCAAGCTAAGTCATGGCAACGATTTCGTC-A-ACT-CTACTCTTAAATTCT 72
Query 61 TCTAGATCAG-TTTCACCTCTGAGATTCCCAAAATTCTCGGGATTTTCTTCTT-CTGCTC 118
|||||||||| ||| ||| || ||||||||||||||||||||||||||||||| || |||
Sbjct 73 TCTAGATCAGCTTT-ACCACTAAGATTCCCAAAATTCTCGGGATTTTCTTCTTCCT-CTC 130
Query 119 CATTCGCTAGATCTTGCCGATTTGGACGACGTAATCTGGAACCCCTTTCCAACGGAATGC 178
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 131 CATTCGCTAGATCTTACAGATTTGGACGACGTAATCTGGAACCACTTTCCAACGGAATGC 190
Query 179 TTTCGTCGGGAAGCAGAGCCGACGGTGCCACGGTGGCGGCTGCATCGATGGAAGGTGTGA 238
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 191 TTTCGTCGGGAAGTAGAGCCGACGGTGCTACGGCGGCGGCTGCATCGATGGAAGGAGTGA 250
Query 239 TGACGGAGGCGATGAAGCTGATTCAATCGGCGTCTCCAACCTGGAAATCAGCCGTGGCTA 298
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 251 TGACGGAGGCGATGAAACTGATTCAATCGGCGTCACCAACTTGGAAATCAGCTGTGGCTA 310
Query 299 ACAATTTGTTGATATTTGTTCTCGGTTCACCGCTTCTTGTTACTGGATTGTCTGCTTCTG 358
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 311 ACAATTTATTGATTTTTGTTCTCGGTTCACCGCTTCTTGTTACCGGATTGTCCGCTTCTG 370
Query 359 GGATCGCCGCCGCGTTTTTGCTCGGTACTTTAACTTGGCGAGCTTATGGCTCTGCTGGTT 418
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 371 GGATCGCCGCCGCGTTTTTGCTTGGTACTTTAACTTGGAGAGCTTATGGCTCTGCTGGTT 430
Query 419 TCCTCTTAGT--C-G----C-T-G-C-T--T-A---C--TT-CG-TC-A--T--A-GGAA 451
|||||||||| | | | | | | | | | | || | || | | | ||||
Sbjct 431 TCCTCTTAGTCGCTGCTTACTTCGTCATAGTAAGTGCATTTGTGATCAACCTGAATGGAA 490
Query 452 CAGCGGCAACAAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 511
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CAGCGGCAACGAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 550
Query 512 AAGGCAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 571
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGGGTAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 610
Query 572 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 670
Query 632 TTTCCAGTTTCTGCACTAAAGTGTCTGACACCGTCTCAAGTGAGATAGGCAAAGCTTATG 691
|||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 671 TTTCCAGTTTCTGCACTAAAGTATCTGACACTGTCTCGAGCGAGATAGGCAAAGCTTATG 730
Query 692 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACCGAGGGAGCTA 751
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 731 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACAGAGGGAGCTA 790
Query 752 TGAGTATTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 811
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGAGTCTTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 850
Query 812 GTTTCCTGGGTCAGATAACCCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 871
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GCTTCCTGGGTCAGATAACTCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 910
Query 872 CCAATCTTGGAGAAAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 931
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CCAATCTTGGAGAGAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 970
Query 932 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATCGTAGCGATTTTGA 991
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 971 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATTGTGGCGATTTTGA 1030
Query 992 TGCAACAGTTTATACTCCAGAATTGGGTCAAGTAAAACCTGTCACGAAGGTCATGTCTTC 1051
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 1031 TGCAACAGTTTATACTCCAGAACTGGGTCAAGTAAAACCTGCCACGAAGGTCATGTATTC 1090
Query 1052 TCAGTGAGGTTAGAttttttttctttcttttttCTATTGTTAAACAC--C-TTACGTATT 1108
|||||||||||||||| |||| |||| | |||||||||||| | |||||||||
Sbjct 1091 TCAGTGAGGTTAGATT------CTTT-TTTTAT--ATTGTTAAACACAGCCTTACGTATT 1141
Query 1109 CAGTTGTGTTGTAAATTACACTCTGTTGTGTACAATTAGTAGTCCAACATCAATGAGGGG 1168
|||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1142 CAGTGGTGTTATAAATTATACTCTGTTGTGTACAACTAGTAGTCCAACATCAATGAGGGG 1201
Query 1169 ATATATAAACTTCTGGAACCCTTGTCTAACAATTATTGGATGATATGAATTTGAATTAAG 1228
| | | |||||||||| ||| ||||||| ||||||||||||||||| || |||||||||
Sbjct 1202 A-A-A-AAACTTCTGGGACCATTGTCTAGCAATTATTGGATGATATTTATGTGAATTAAG 1258
Query 1229 TCCACCTTTGAAATTGTCCCGTAGATAGAGAGACTTTTAAAATCTCATAAATCT-CTT-G 1286
| |||||| |||||||||||||||||||| |||| |||||| || | ||| ||| |
Sbjct 1259 TTTGCCTTTGCAATTGTCCCGTAGATAGAGAAACTTATAAAATTTC-T---TCTGCTTAG 1314
Query 1287 --ATCCATTCACTTGATCTCTTCCACTTCCTTCACATGAAATCCAAACTCTATTGCGACA 1344
|||||||||| |||| ||||| | |||||||||||||| |||||| ||||||||||||
Sbjct 1315 GGATCCATTCACGTGATTTCTTCTATTTCCTTCACATGAAGTCCAAATTCTATTGCGACA 1374
Query 1345 TCAGAAATTGAAGAA-ACTGTaaaaaaaaTACAGGTAG-AAAGTAGAGGAAGTAGTGATG 1402
||| ||||||||||| | |||||||||| | | |||| ||| ||||| |||||||||||
Sbjct 1375 TCATAAATTGAAGAACA-TGTAAAAAAAGTT-ATGTAGCAAA-TAGAGAAAGTAGTGATG 1431
Query 1403 TAAATGTAAGAAAAA-G---G---------CAACAACAAAGTATCAAAAATTGGTTGAGA 1449
|||||||||||||| | | ||||||||||||| ||| ||||||||||||
Sbjct 1432 AAAATGTAAGAAAAAAGTTTGAAGAAAAGGCAACAACAAAGTACCAAGAATTGGTTGAGA 1491
Query 1450 AAGAAGTAGaaaaaaaGGTCGTGATTTTCTCGAATACATTCTTCCTTTT 1498
||||||| | || || |||||||||||||||||||||||||| ||||
Sbjct 1492 AAGAAGTCGTCGAAGAG-TCGTGATTTTCTCGAATACATTCTTCTTTTT 1539
Score = 224 bits (121), Expect = 2e-57
Identities = 230/277 (83%), Gaps = 29/277 (10%)
Strand=Plus/Plus
Query 1499 ATATTCTCGTCGTTGCGTAAGATAATGTTTCTGGTGGCCAATTTTAATTTAGATGCCTCT 1558
||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1576 ATATTCTCGACGTTGCATAAGATAGTGTTTCTGGTGGCCAATTTTAATTTAGAAGCCTCT 1635
Query 1559 AGAGAAATAAAACTAAGCATCAATCGGCCTAGCTGTTATACA-G-C-G--AGACTTAACA 1613
||||||| || | ||||| |||||||||||||||| ||| | | | ||||||||||
Sbjct 1636 AGAGAAA-AA---T--GCATCCATCGGCCTAGCTGTTAAACAAGACAGCGAGACTTAACA 1689
Query 1614 GGCCTGCT-ACTTT-A-A---A-GA----TGAAGAAAATTTATACAATGCGTTGCTTTTA 1662
||| || | ||||| | | | || ||||||||| |||||||||||||||||| ||
Sbjct 1690 GGCTTGTTTACTTTTAGACTTATGAAACATGAAGAAAAATTATACAATGCGTTGCTTCTA 1749
Query 1663 CGAACCTTTGTGGTCCGCTATACGATACGACGATGGCCCATGGGCCGCGACATTTGTCTA 1722
||||||| ||||||||| ||| |||||||| |||||||||||||||| |||| ||||||
Sbjct 1750 CGAACCT--GTGGTCCGCAATAAGATACGACAATGGCCCATGGGCCGCAACATCTGTCTA 1807
Query 1723 ATACA--GCTGACAAGTGACAAC---CACACGCGCTC 1754
| ||| ||||||||||| ||| |||||||||||
Sbjct 1808 ACACACAGCTGACAAGTGTCAAAATTCACACGCGCTC 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5