BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477028
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family p... 1524 0.0
> AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family
protein | chr1:29575956-29577658 FORWARD LENGTH=1019
Length=1019
Score = 1524 bits (825), Expect = 0.0
Identities = 895/929 (96%), Gaps = 4/929 (0%)
Strand=Plus/Plus
Query 1 AAAGAGCAGAAGAATTTTGCAGAAGAAAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 AAAGAGCAGAAGAAATTTGCAGAAGAGAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 62
Query 61 TCGACGGTGATACTCCCTACTTCTTCCGTGAAATCCTCCGGTTGTGAGAGAAAGTCTCCG 120
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 63 TCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCG 122
Query 121 TTTTTAGGGTTCTCTCTAACGGCTATCTCGAAGCCGTCGGTAAGAGTTGGCATTTATGCG 180
||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 123 TTTTTAGGGTTCTCTTTAACGGCTATCTCGAAGCCGTCGGTACGAGTCGGCATTTATGCG 182
Query 181 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCAGACGACGACGACGACTTCT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGC---CGACGACGACGACTTCT 239
Query 241 CTTGTTCCGGCGAATCAGCGATGGATGTTCGACGAAGAAGAAGCCAATGGCCCTGACATC 300
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 CTTGTTCCGGCGAATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTGACATC 299
Query 301 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGATAAGCCCTGGTTT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGACAAGCCCTGGTTT 359
Query 361 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCAACAATTGCTAATCACATC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATC 419
Query 421 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTTGACATGGGAGCCTTTGTGATTGTG 480
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 420 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTG 479
Query 481 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAAAAGCGGAACCAAAAGCTGTACAGGAGG 540
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 480 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGG 539
Query 541 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 599
Query 601 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGAAGGCTTGGGAGA 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGACGGCTTGGGAGA 659
Query 661 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCGGACCATCCACACGAGGCCCAGAAG 720
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 660 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAA 719
Query 721 CCGCTTGATCTGCCTATTAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCACCTCCAC 780
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 720 CCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCTCCACCAC 779
Query 781 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 839
Query 841 TC-AAAACCAGAGGAGGCTTTGCAGATTCTTGTTATCGCTTCTATCAACTCTGTTATGCT 899
| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 840 CCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTCTGTTATGCT 899
Query 900 ATAAAGCTTTCTAATGTGAAATATTTCTC 928
| ||| ||||||||| |||||||||||||
Sbjct 900 ACAAAACTTTCTAATTTGAAATATTTCTC 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5