BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477029
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases | c... 2455 0.0
> AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases |
chr1:29582929-29585641 FORWARD LENGTH=1721
Length=1721
Score = 2455 bits (1329), Expect = 0.0
Identities = 1583/1701 (93%), Gaps = 35/1701 (2%)
Strand=Plus/Plus
Query 1 AAAAACCTCCCAAATCTGAGAAATCGGAAAAGATGACTCACACCGAAACCCTAAATATTC 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 27 AAAAACCTCCCAAATCTGAGAAATCGGAAAAGATGACCCACACCGAAACCCTAAATCTGC 86
Query 61 TCGATGAAATCGAATCGCTTGTCTCCGATCAGCTTCAAGTGGTATCTTACAAATGGTTGA 120
||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 87 TCGATGAAATCGAGTCTTTTGTCTCCGATCAGCTTCAAGTGGTATCTTACAAATGGCTGA 146
Query 121 GTCGAAATTTCTCGCTTTCATCAAATACTGCCAAGAGGTTGCTCAAGGATTTTGTAGAGA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 147 GTCGAAATTTCTCGCTTTCATCAAATACGGCCAAGAGGTTGCTCAAGGATTTTGTAGAGA 206
Query 181 AACAAGGGAAGGGTTTGGAAGTTGTATATATTGTGTCTGGGTTGCTAAAGAACGGACCTT 240
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 207 AACATGGGAAGGGTTTGGAAGTTGTATATATTGTGTCCGGATTGCTAAAGAACGGACCTT 266
Query 241 -CGAATTACCACGCAAGGCTTGCTTCTAGCACCGAACTTCCAGAAGTGGAGAAAGAGTTC 299
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 267 CCG-ATTACCACGCAAGGCTTGCTTCTAGTACCGAACTTCCAGAAGTAGAGAAAGAGTTC 325
Query 300 AATGGAAAATATTCAGTACATATCTACAGTGTTCAAGCTAGTATTCCAATGGATCCAGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AATGGAAAATATTCAGTACATATCTACAGTGTTCAAGCTAGTATTCCAATGGATCCAGCA 385
Query 360 GCCATATGGAACACTGAGTTTGTGCAAGCAGAAGAACTCTTCAGGCAGCATTCTGCCATT 419
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 386 GCCATATGGAACACTGAGTTTGTACAAGCAGAAGAACTCTTCAGGCAGCCTTCTGCCACT 445
Query 420 GATAATTGCTTGAAAGGCAACAGGTTTTGTGGCGTCTCCAATTCTTGTGTAAAGCGCAAT 479
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 446 GATAATTGTTTGAAAGGCAACAGGTTTTGTGGCGTCTCCAATTCTTGTGTGAAGCGCAAT 505
Query 480 ATAGAGGGAACCACTGAAAATGTTACGGTCCCGCGAACTGAAATTGTGAGAACTACAGGA 539
||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 506 ATAGAGGGAGCCACTGAAAATGTTACCGCCCCGCGAACTGAAAGTGTGAGAACTACAGGA 565
Query 540 CAATCTAAAAGTAGTTTAAATTTTCAAAAGAGTACATTGCCGTCAAACCAGGGAAAGAAT 599
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 566 CAATCTAAAAGTAGTTCAAATTTTCAAAAGAGTACAGTGCCGTCAAACCAGGGAAAGAAT 625
Query 600 TTTCAGCACTCAAGCCCTAATGTTGTCCATCAGGGTAAGAGTGAAACTACTGCTGCTCCA 659
|| |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||||||
Sbjct 626 TTCCAGCACTCAAGCTCTAATGTTGGCCATCAGGCTAAGAGTGAATCTATTGCTGCTCCA 685
Query 660 GCTAAAAATCAGTCTGCGAAATCCTCTTTGGATAAAGAAAAAGCTTTTCCTGTGCCCGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 686 GCTAAAAATCAGTCTGCGAAATCCTCTTTGGATAAAGAAAAAGCTTTTCATGTGCCCGCT 745
Query 720 AATAAAAAGAATGGACAGGGCGAAAAGAAG-GTGACTGGAACTGGTGGTTTGTTGAAAAA 778
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 746 AATAAAAAGAATGGACAGGGCGAGAAGA-GCGTGACTGGAACTGGTGGTTTGTTGAAAAA 804
Query 779 TATGTGGGGCCGTGTGCCTATGAAAACAGAAGATGATACTCCAACAGTAGAGGTCAAAAA 838
||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct 805 TATGTGGGGCCGTGTGCCTGTGAAAACAGAAGATGATTCTCCAACAGTAGATGTGAAAAA 864
Query 839 TCATAATACTGATCATTCGGAAGCCGAAAAACCTTCTCATGATACCGACAATAAAGGAGG 898
||||| |||| ||||||||||| || ||||||||||||||||| | ||||| || |||||
Sbjct 865 TCATATTACTAATCATTCGGAACCCCAAAAACCTTCTCATGATGCTGACAAGAAGGGAGG 924
Query 899 CAGCGATGATGAGACTCGAGATGTCAATTTCATGAGAGCGCCTAAAAATGATAACAGAAA 958
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 925 CAGCGATGATGAGACTCGAGACGCCAATTTCATGAGAGCGCCTAAA---GATAACAGAAA 981
Query 959 AAGGAAGGTGATATTTGATTTTTCAGATGACGAGTATGAAGATGTAATCAGCCTAGCATC 1018
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 AAGAAAGGTGATATTTGATTTTTCAGATGACGAGTATGAAGATGTAATCAGCTTAGCATC 1041
Query 1019 TCCTAGTAGTCCAAAGGTTAATTCACGTCCAGATGTGGAACTCAGTTCCGAAGATTCAGG 1078
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1042 TCCTAGTAGTCCAAAGGTTAATTCACGTCCAGATGTCGAACTCAGTTCGGAAGATTCAGG 1101
Query 1079 TCCAAAGAAGCCTGACGCAGAT----CG--AGAGATAAAATCTGAGGAACCAGAGGTCAG 1132
|||| ||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 1102 TCCAGAGAAGCCTGACGCAGATGTTTCTCCAGAGATAAAATCTGAGGAACCAGAGGCCAG 1161
Query 1133 CAAAGAAGACAGGCAAAA-AC--CT---G------CTTCTACGACTTTGTCAATGGAGAA 1180
|||||||||||||||||| || || | |||||||||||||||||| ||||||
Sbjct 1162 CAAAGAAGACAGGCAAAACACTGCTTCTGTTGATGCTTCTACGACTTTGTCAACGGAGAA 1221
Query 1181 GATCCAGGCCATTGGTTCTGAAGCTAAAGTAAATCCCTCAAAGGGAAGAACTACTGAAGT 1240
||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||
Sbjct 1222 GATCCAGGCCATTGGTTCTGAAGCTGAAGTGAATCCCTCAAAGAGAAGAACTACTGCAGT 1281
Query 1241 TTCTAGTTCACCGAAAAGGAAAAAGGTGTTGAAGTCACGGATTGATGATCGTGGGAGAGA 1300
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TCCTAGTTCGCCGAAAAGGAAAAAGGTGTTGAAGTCACGGATTGATGATCGTGGGAGAGA 1341
Query 1301 AGTAACTGAGGTAGTGTGGGAGGAGACAGAAACGCTTC-CTAAGAAGAAAGAGGACACTG 1359
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1342 AGTAACTGAGGTAGTGTGGGAGGAGACAGAAACGAA-CGCAAAGAAGAAAGAGGACACTA 1400
Query 1360 ACACAAGTAAGAAGTTAAATGATGGCAAAAGCGCAAATGCTGTTAACAGGGCGGTGGCGC 1419
| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
Sbjct 1401 ATACAAGTAAGAAGTTAGATGATGGCAAAACCGCAAATGCTGTTAACAGGGCGGTTGCAC 1460
Query 1420 AGAAGAAGAGTCCGGCCGTGGGAAACACAGCAGCCACAAACGCAGGAGGAAAAGCAGGAA 1479
||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1461 AGAAGAAGAGTCCGGCCATTGGAAACACAGCAGCGACAAACGCAGGAGGAAAAGCGGGAA 1520
Query 1480 GCAAGAAAGGCGGAAACGCCAAAGATCCAAAGCAAGGGAACATAATGTCCTTCTTCAAGA 1539
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1521 GCAAGAAAGGAGGAAACGTCAAAGATCCAAAGCAAGGGAATATAATGTCCTTCTTCAAGA 1580
Query 1540 AAGTTTAAAAATGCTT-TTT---GTATTTATTGTTTGCTATGTTTGA-TTGAGGATAT-A 1593
||||||||||| |||| ||| ||||||||||||||||| |||||| |||||||||| |
Sbjct 1581 AAGTTTAAAAAGGCTTCTTTTTTGTATTTATTGTTTGCTAAGTTTGAGTTGAGGATATTA 1640
Query 1594 TATCAAAATCAGAACTTGGATTCATCTGACTGTATGTTTTGATCCATTGTTTCTaa-aaa 1652
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1641 TAGGAAAATCAGAACTTGGATTCATCTGACTGTATGTTCTGATCCATTGTGTCTAAGAAA 1700
Query 1653 aaCA-CTTTTGAGCCGTTTCT 1672
|| | ||||||||||||||||
Sbjct 1701 AAAAACTTTTGAGCCGTTTCT 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5