BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477030
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78660.1 | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase ... 1629 0.0
AT1G78680.1 | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase ... 905 0.0
AT1G78670.1 | Symbols: ATGGH3, GGH3 | gamma-glutamyl hydrolase ... 728 0.0
AT1G75480.1 | Symbols: | pseudogene, hypothetical protein, sim... 163 3e-39
> AT1G78660.1 | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase
1 | chr1:29585811-29588302 FORWARD LENGTH=1322
Length=1322
Score = 1629 bits (882), Expect = 0.0
Identities = 1007/1067 (94%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 105 CGATATTGCTCCCTAGTCAAGCCGGATTTGACGGTTCAGGGAGTCCGGTTTGCTCCTCGC 164
|||| |||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 170 CGATTTTGCTCCCTAGTGAATCCGGATTTGACGGTTCTCGGAGTCCGGTTTGCTCCTCGC 229
Query 165 CGGATCCGAACCTGAACTACAGGCCGGTCATCGGTATCCTGAGTCACCCTGGAGATGGCG 224
||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 230 CGGATCCGAACCTCAACTACAGACCTGTCATCGGTATCCTGAGTCACCCTGGAGATGGTG 289
Query 225 CGTCCGGTCGGTTGACCAATGATACGAGTTCCACGTACATCGCGGCTTCCTATGTAAAGT 284
|||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||
Sbjct 290 CGTCTGGTCGGTTGACCAATGATACGAGCTCGACGTACATCGCTGCTTCGTATGTGAAGT 349
Query 285 TCGCTGAGGCAGGTGGAGCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAACTCC 344
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 350 TCGCTGAGGCAGGTGGTGCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAAGTGC 409
Query 345 TCTTTCAGAAGCTAGAACTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAAT 404
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TCTTCCAGAAGCTAGAGTTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAAT 469
Query 405 ATGATTATTTCGAGATCGTCaaaaaaaTCTTCAATAGAGCTTTGGAGAGAAATGATGCTG 464
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 470 ATGATTATTTCGAGATCGTCAAAAAAATCTTCACTAAAGCTTTGGAGAGAAATGATGCTG 529
Query 465 GAGAGCATTTTCCAGTTTATGGCATTTGTCTCGGATTCGAGCTTATGTCAATTATCATCA 524
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 530 GAGAGCATTTCCCAGTATATGGCATTTGCCTCGGATTCGAGCTTATGTCAATTATCATAA 589
Query 525 GTCAGAACAGAGACATTCTTGAAAGATTTGATGCAGAGGATAATGCATCAACCCTACAGT 584
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 590 GTCAGAACAGAGACATTCTTGAAAGATTTGATGCAGAGGATAATGCATCAAGTCTCCAGT 649
Query 585 TTGTTGATAATGTTAATATCGATGGAACATTATTCCAAAGATTTCCTCCAGAGCTGTTGA 644
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct 650 TTGTTGATAATGTTAATAACGATGGAACATTATTCCAAAGATTTCCGCCAGAGTTGTTGA 709
Query 645 AAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACACAAGTATGGTATCACACCAGCAA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACACAAGTATGGTATCACACCAGCAA 769
Query 705 ACTTTCAAGGCAATCCTGCTTTGTCTAGTTTCTTTGAAATCCTCACAACCTGCATAGATG 764
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 770 ACTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTTGAAATTCTCACAACCTGCATTGATG 829
Query 765 AAAACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGATACCCAATAACTGGCTTCC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AAAACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGATACCCAATAACTGGCTTCC 889
Query 825 AGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGG 884
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 890 AGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGG 949
Query 885 ATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCAC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCAC 1009
Query 945 TGAACAGACCACCA-TCAAAGAAAGTGCTAAGCAATCTCATATACAACTATAAGCCTACT 1003
||||||||||| | || |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1010 TGAACAGACCAG-AGTCTCAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACT 1068
Query 1004 TACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTCACACAACCAAGATCC 1063
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1069 TACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTTACACAACCAAGATCC 1128
Query 1064 CGTTTCTGAGGACTTTACTCGTCTTCTTGTGTGTTTGTTTGTAACTCTGATTTCTAGTTT 1123
||||||| || |||||||||||| ||||||||||||||||| |||||| |||| |
Sbjct 1129 CGTTTCTAAGAACTTTACTCGTCGTCTTGTGTGTTTGTTTGGAACTCTTATTT--A---- 1182
Query 1124 CATTGTAGGGAGCCG-ATTGTTTTGCATGATTTCCCTGGTTGATTTT 1169
|||| |||||||||| ||||| ||||||||||||||| |||||||||
Sbjct 1183 CATT-TAGGGAGCCGGATTGTCTTGCATGATTTCCCTTGTTGATTTT 1228
> AT1G78680.1 | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase
2 | chr1:29593781-29596270 FORWARD LENGTH=1429
Length=1429
Score = 905 bits (490), Expect = 0.0
Identities = 887/1074 (83%), Gaps = 46/1074 (4%)
Strand=Plus/Plus
Query 18 tctcttcttctTGCTCGGAGATGTGGCGTTACGTTTGTTTACCGTTTTTA-TTCT-T-GC 74
||| ||| |||| ||| ||||||||| | |||||||| |||||||| || ||| | |
Sbjct 134 TCT-TTCCTCTTCCTCTGAGATGTGGAGCTACGTTTGGTTACCGTTGGTAGCTCTATCTC 192
Query 75 T-TTGGAGCGATA-CA-GGT-CTGGCCGA-G-T-CGACGATAT-TGCTCCCTAGTCAAGC 126
| || || |||| || | ||||| | | | ||||||| | | |||||||||||| |
Sbjct 193 TCTTTAAG-GATAGCATCATAATGGCCAAGGCTGCGACGAT-TCTCCTCCCTAGTCAAAC 250
Query 127 CGGATTTGACGGTTCAGGGAGTCCGGTTTGCTCCT-CGCCGGATCCGAACCTGAACTACA 185
||||||||| ||| |||||||||| |||| || | |||||||||||||| || ||||
Sbjct 251 CGGATTTGATATTTCTCGGAGTCCGGTATGCT-CTGCTCCGGATCCGAACCTAAATTACA 309
Query 186 GGCCGGTCATCGGTATCCTGAGTCACCCTGGAGATGGCGCGTCCGGTCGGTTGACCAATG 245
| ||||| || ||||| ||||| || ||||| || || ||||| ||||| |||| |||||
Sbjct 310 GACCGGTTATTGGTATTCTGAGCCATCCTGGCGACGGTGCGTCAGGTCGTTTGAGCAATG 369
Query 246 ATACGAGTTC-C-ACGTACATCGCGGCTTCCTATGT-AAAGTTCGCTGAGGCAGGTGGAG 302
||| || | | | | ||| |||||||| ||||| ||| || |||||| | |||||||
Sbjct 370 CTAC-AG-ACGCGTCCTCCATTGCGGCTTCGTATGTGAAA-TTAGCTGAGTCTGGTGGAG 426
Query 303 CTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAACTCCTCTTTCAGAAGCTAGAAC 362
| ||||| ||||||||||||| ||||| ||||||||| | ||||||||||||||||||
Sbjct 427 CACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCTCTTTCAGAAGCTAGAAT 486
Query 363 TGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAATATGA-T-TATTTCGAGAT 420
||||||||||||||||| | ||||||||||||||| ||| | | || | ||||| || ||
Sbjct 487 TGGTCAACGGTGTGATACTAACTGGTGGTTGGGCT-AAAGA-AGGATTGTATTTTGAAAT 544
Query 421 CGTCaaaaaaaTCTTCAATAGAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCCAGT 480
|||||| ||||||||||||| || |||||| |||||||||||||||||||||||||| |
Sbjct 545 CGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCC--T 602
Query 481 TTAT-GGC-ATTTGTCTCGGATTCGAGCT-TATGTCAATTATCATCAGTCAGAACAGAGA 537
||| || ||||| |||||||| ||||| | || |||| ||||| || |||||||||||
Sbjct 603 ATATACGCTATTTGCCTCGGATTTGAGCTCT-TGACAATGATCATAAGCCAGAACAGAGA 661
Query 538 CATTCTTGAAAGATTTGATGC-AGAGGATAATGCATCAACCCTACAGTTTGTTGATAATG 596
|||| |||||| | | ||||| ||| || |||||||| || ||||| ||||| ||||
Sbjct 662 CATTTTTGAAAAAATGGATGCAAGA-AATTCTGCATCAAGTCTTCAGTTCGTTGAAAATG 720
Query 597 TTAATATCGATGGAA-CATTATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGT 655
|||||||| | |||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TTAATATCCAAGGAACCA-TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGT 779
Query 656 ACAGATTGTTTGGTTATGCAGAAACA-CAAGTATGGTATCACACCAGCAAA-CTTTCAAG 713
||||||||| ||||||||||||| || | || ||||||| ||||| |||| |||| |||
Sbjct 780 ACAGATTGTCTGGTTATGCAGAATCATCG-GTTTGGTATCTCACCA-CAAAGCTTTGAAG 837
Query 714 GCAATCCTGCTTTGTCTAGTTTCTTTGAAATCCTCACAACCTGCATAGATGAAAACAGCA 773
| ||| |||| |||||| ||||||| |||| ||||||| ||| | ||||| ||| |||
Sbjct 838 GAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCA 897
Query 774 AGACTTATGTTTCAACTGTTAAAGCAA-AGAGATACCCAATAACTGGCTTCCAGTGGCAT 832
|| |||||||||||| ||| || ||| | | ||| ||| | || |||||||||||||||
Sbjct 898 AGGTTTATGTTTCAACAGTTCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCAT 956
Query 833 CCTGAGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATC 892
||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||
Sbjct 957 CCTGAGAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATC 1016
Query 893 CAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGA 952
|||||||| ||||| || || | | || ||||||||||||||||||||||||||||||||
Sbjct 1017 CAGGTGACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGA 1076
Query 953 CCACCA-TCAAAGAAAGTGCTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGG 1011
||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 CCAG-AGTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGG 1135
Query 1012 ATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTCACACAACCAA-GATCCC 1064
||||||||||| |||||||||||||||||||| |||||||||| || ||||||
Sbjct 1136 ATACGCAGGGATTGGTTACGACGAGGTTTACATCTTCACACAAC-AACGATCCC 1188
> AT1G78670.1 | Symbols: ATGGH3, GGH3 | gamma-glutamyl hydrolase
3 | chr1:29590945-29593499 FORWARD LENGTH=1347
Length=1347
Score = 728 bits (394), Expect = 0.0
Identities = 686/826 (83%), Gaps = 24/826 (3%)
Strand=Plus/Plus
Query 258 CGTACATCGCGGCTTCCTATGTAAAGTTCGCTGAGGCAGGTGGAGCTCGTGTTATCCCAC 317
|||||||||| ||||| ||||| ||||| |||||| | |||||||||||||| || || |
Sbjct 371 CGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTC 430
Query 318 TCATCTACAACGAACCTGAAGAACTCCTCTTTCAGAAGCTAGAACTGGTCAACGGTGTGA 377
| ||||||||||| ||||||||| || | ||||||||||||||| |||| || |||||||
Sbjct 431 TTATCTACAACGAGCCTGAAGAAATCTTGTTTCAGAAGCTAGAATTGGTAAATGGTGTGA 490
Query 378 TATTCACTGGTGGTTGGGCTAAAAAATATGATTAT-TT-CGA-GATCGTCaaaaaaaTCT 434
||||||| |||||||||||| |||| | | |||| || ||| | | || | |||||||
Sbjct 491 TATTCACAGGTGGTTGGGCT--AAAACAGGGTTATATTACGATG-TTGTGGAGAAAATCT 547
Query 435 TCAATAGAGCTT-TGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGT 493
|||||| || || |||||| ||||||||||||||| |||||||| || || | ||| |||
Sbjct 548 TCAATAAAG-TTATGGAGAAAAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGT 606
Query 494 CTCGGATTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTT 553
|| ||||||||| || ||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 607 CTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTT 666
Query 554 GA-TGCAG-AGGA-TAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGA 610
| | ||| | | | ||||||||| || |||||| || | || ||||||||||| | |
Sbjct 667 AACT-CAGTA-AACT-ATGCATCAAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCA 723
Query 611 ACATTATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTT 670
|| | |||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 724 ACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTT 783
Query 671 ATGCAGAAACACAAGTATGGTATCACACCAG-CAAACTTTCAAGGCAATCCTGCTTTGTC 729
|||||||| ||| | | ||||||| |||||| ||| |||||||||||||||| | ||||
Sbjct 784 ATGCAGAACCACTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAATCCTTATCTGTC 842
Query 730 TAGTTTCTTTGAA-ATCCTCACAACCTGCATAGATGAAA-ACAGCAAGACTTATGTTTCA 787
||||||||| || ||| |||||||| || ||| ||| |||||||||||| |||||||
Sbjct 843 TAGTTTCTTC-AATATCGTCACAACCAGCGCCGAT-AAAGACAGCAAGACTTTTGTTTCA 900
Query 788 ACTGTTAAAGCAAAGA-GATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGC 846
||| || | |||| | ||||||| | || | |||||| |||||||| |||||||||||
Sbjct 901 ACTATTCGATCAAA-ACGATACCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGC 959
Query 847 ATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCA 906
||| |||||||||||||| | || |||||||||||||| ||||| |||||||| || ||
Sbjct 960 ATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAACA 1019
Query 907 TGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAA 966
|||||| | |||| ||||||||||||| || |||||| ||||||||||| | || ||||
Sbjct 1020 TGCTGCAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGACCATCTTCTGAGAA 1079
Query 967 AGTGCTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGG 1026
|||||| ||||||||||| |||||||| |||||||| |||| |||||| |||||| ||
Sbjct 1080 AGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCGGATACAAAGGGAGCGG 1139
Query 1027 TTACGACGAGGTTTACATTTTCACACAACCAAGATCCCGTT-TCTG 1071
| ||||||||||||| |||||||| ||| |||||||| || ||||
Sbjct 1140 TGACGACGAGGTTTATATTTTCACGTAACAAAGATCCC-TTCTCTG 1184
> AT1G75480.1 | Symbols: | pseudogene, hypothetical protein, similar
to GB:AAC33745 from (Arabidopsis thaliana) | chr1:28334088-28334744
REVERSE LENGTH=657
Length=657
Score = 163 bits (88), Expect = 3e-39
Identities = 93/95 (98%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 834 CTG-AGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATC 892
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTGTAGAAAAATGCATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGGATGCAATC 120
Query 893 CAGGTGACACAGCATGCTGCTAGTTATTTAGTCAG 927
|||||||||||||||||||||||||||||||||||
Sbjct 121 CAGGTGACACAGCATGCTGCTAGTTATTTAGTCAG 155
Score = 130 bits (70), Expect = 3e-29
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 925 CAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAAAGTGCTAAGCAATCTCAT 984
|||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 246 CAGTGAAGCTAGGACGTCACTGAACAGA-CACCATCTAAGAAAGTGCTGAGCAATCTCAT 304
Query 985 ATACAACTATAAGCCTACTTACT 1007
|||||||||||||||||||||||
Sbjct 305 ATACAACTATAAGCCTACTTACT 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5