BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477033
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78690.1 | Symbols: | Phospholipid/glycerol acyltransferase... 1711 0.0
> AT1G78690.1 | Symbols: | Phospholipid/glycerol acyltransferase
family protein | chr1:29596655-29598629 FORWARD LENGTH=1163
Length=1163
Score = 1711 bits (926), Expect = 0.0
Identities = 1073/1145 (94%), Gaps = 6/1145 (1%)
Strand=Plus/Plus
Query 1 GATGAATTCCTCCCCAGCAAGCTTCTTCGATTTCCCTCTAACACCAATCGTCTGGTCTCG 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GATGAATTCCTCCCAAGCAAGCTTCTTCGACTTCCCTCTAACACCAATCGTCTGGTCTCG 60
Query 61 TTTCTAATCGGAGGGAACTTTGAAGCAAATGGGGAGGGTAATGGATTGGGCAGCAAGATC 120
|||||||| |||| |||||||||||| |||||||| | ||||||| ||||||||||||||
Sbjct 61 TTTCTAATTGGAGAGAACTTTGAAGCTAATGGGGAAGATAATGGAATGGGCAGCAAGATC 120
Query 121 TGATCATTTGGGAGGACTTCCAAGGAAAACTATGATAATGGCTGTTAGTGCATTTGCAAA 180
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 121 TGATCATTTGGGAGGAATTCCAAGGAATACTGTGATAATGGCTGTTAGTGCATTTGCAAA 180
Query 181 AGCGGTAGCGAATCTTTGTAACAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCT 240
||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCAGTAGCAAATCTTTGCAATAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCT 240
Query 241 TGTCCGGTCAAGACCACCGGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCAACTTT 300
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TGTCCAGTCAAGACCACCTGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTT 300
Query 301 GGATGATCCAGTTATGTGGGGGGCATTCAAGGGTCTCCTTTCCTTAGATCCAGAATTGGC 360
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGATGATCCAGTAATGTGGGGGGCATTTAAGGGTCTCCTTTCCTTAGATCCAGAATTGGC 360
Query 361 TCGGTGGGTTCTTGCTGCGGAGGACATATGTTTCAGGAACCCTATCTTCTCCTACATTTT 420
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 361 TCGGTGGGTTCTTGCTGCAGAGGATATATGTTTCAGGAACCCTATATTCTCCTACATTTT 420
Query 421 CCGCACTGGAAAATGCATACCTATAACCAGAGGTGGTGGAATCTATCAAGAACACATGAA 480
||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 421 CCGCACTGGAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAA 480
Query 481 TGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTTCCAGAGGGAAAGGT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTCCCAGAGGGAAAGGT 540
Query 541 GTTTCAAGAAGATGTTCCTATAAGACGACTAAAATGGGGAACTGCAAGCCTCATCGCCCG 600
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GTTTCAAGATGATGTTCCTATAAGACGACTTAAATGGGGAACTGCAAGCCTCATCGCCCG 600
Query 601 TTGCCCC-GTTACCCCAATCGTCTTGCCAATAATTCACCGTGGTTTTGAGGAGATGTTGC 659
|| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 601 TT-CCCCAGTTACCCCAATCGTTTTGCCAATAATTCACCGTGGTTTTGAGGAGATGATGC 659
Query 660 CGGAGAACTACAACAATGGACGAAGACCACTGGTACCACTGT-GCAACAAAGACCTGAAA 718
||||||||||||| ||||||||||||||||||||||| || | |||||| |||| |||
Sbjct 660 CGGAGAACTACAATAATGGACGAAGACCACTGGTACCGTTGCCG-AACAAACACCTTAAA 718
Query 719 GTTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCCATGATGGTTGAGACGGCTGTCTTG 778
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 719 GTTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCAATGATGGTTGAGACTGCTGTCTTG 778
Query 779 GCCTCTCGCCATGTAACCCCTCCTCTTCAAGAAGCGAAATGGCCTGTCCTCACTTCTGCT 838
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 GACTCCCGCCATGTAACCCCTCCTCTTCAAGAAGTGAAATGGCCTGTCCTCACTTCTGCT 838
Query 839 GGCCAAGAGCTAGACGAAACTGCTCAGAGA-AGCCTGTACATAGCTCTTTCCGAGAAAAT 897
||||||| |||||||||||||||||||||| | ||| ||||||||||| |||||||| ||
Sbjct 839 GGCCAAGTGCTAGACGAAACTGCTCAGAGACA-CCTCTACATAGCTCTGTCCGAGAAGAT 897
Query 898 CCAATCCTCCTTGGAAACATTGAGACTCTTAGCCAAGCGATTGTGACCTCCGCCGGGAAA 957
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 898 TCAATCCTCCTTGGAAACATTGAGACTCTTAGCCAAGCGGTTGTGACTTCCGCCGGGAAA 957
Query 958 CTTCAAATCAGAATCCGGTTCATAATTTTTTAAGTTCCGGTTAAGATCCGCAATGGTAAT 1017
||||| |||| ||||||||||| || |||| ||||||||||| |||| ||| ||||||||
Sbjct 958 CTTCATATCAAAATCCGGTTCACAACTTTTAAAGTTCCGGTTTAGATTCGCCATGGTAAT 1017
Query 1018 CAAATATTATCTTTATTTAATTTTCTGAAGCTGATAAAAAATTATATAAGTATGATAATT 1077
||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||| ||||
Sbjct 1018 CAAATATTATCTTTATTCAATTTCCTGAAGCTGAGAAAAAATTATATAACTATGAAAATT 1077
Query 1078 AAATAACTCGCATTTTAATTTATTTTATCGACTAGGATATATAGCAACCCGCAATAATGA 1137
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TAATAACTCGCATTTTAAATTATTTTATCGACTAGGATATATAGCAACCCGCAATAATGT 1137
Query 1138 ATGTT 1142
|||||
Sbjct 1138 ATGTT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5