BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477036
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78730.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Ric... 1447 0.0
AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein | ... 281 9e-75
AT4G13985.1 | Symbols: FBD1 | FBD-associated F-box protein | ch... 183 3e-45
AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 171 2e-41
> AT1G78730.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein | chr1:29607689-29609441
REVERSE LENGTH=1414
Length=1414
Score = 1447 bits (783), Expect = 0.0
Identities = 963/1048 (92%), Gaps = 20/1048 (2%)
Strand=Plus/Plus
Query 22 GACGCAGAGAGCCGTGTGCGTGCCAAACGCTCGGATGATAGGATG-GGTCATCTAGATAG 80
||||||||||| |||||| || ||| ||||||| ||||||||| | |||||||||||| |
Sbjct 10 GACGCAGAGAGTCGTGTGAGTTCCACACGCTCGTATGATAGGA-GAGGTCATCTAGATTG 68
Query 81 GCTGAGCAAATTACCAGATCCATTGCTATGTCAGGTACTCTTGAATCTTCCCACAAAAGA 140
|||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 69 GCTGAGAAAATTACCAGATTCATTGCTATGTCAGGTTTTCTTGAATCTTCCCACAAAAGA 128
Query 141 TGTGGTTAAGACTAGTGTGTTATCCAGTAGATGGGAAAATATCTGGAGAAGTGTACCTGG 200
|||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||
Sbjct 129 TGTGGTTAAGACTAGTGTGTTATCAAGTACATGGGGAAATATATGGAGAAGTGTACCTGG 188
Query 201 TTTGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTTTGTGAGCTTTGTTGATAG 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 189 TTTGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTTTGTGAGCTTTGTCGATAG 248
Query 261 CTTTCTGGGTTTTAACCGCGAATCTTGCCTGCAAAATTTCAAGTTAAACTACCAATATTT 320
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 249 CTTTCTGGGTTTTAACAGCGAATCTCGCCTGCAAAATTTCAAGTTAAACTACCAATATTT 308
Query 321 AAGGCGAAAGTACAAATGGAAGTGGACTGAGCTTGATAATGCTAATGTCACCCGGTGGAT 380
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AAGGCTAAAGTATGAATGGAAGTGGACTGAGCTTGATAATGCTAATGTCACCCGGTGGAT 368
Query 381 CAACACAGTTATTAAGCGGAAAGTTGAACATCTTCATCTCTCTGACGTGATCTTCAATAA 440
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 369 CAACACAGTTATTAAGCGGAAAGTTGAACATCTTCATCTCTCTGACGTGACCTTCAGTAA 428
Query 441 TCCCAAGTCCGTTTCTTTACCTTGTGTCAAAGTTATGCATCTAGATATTGTTAAGTTTGC 500
|||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 429 TCCCGAGTCTGTTTCTTTACCTTGTGTCAAAGTTATGTATCTAGATATGGTTAAGTTTGC 488
Query 501 CAACGATTGGGCTTTCGAAATGCTCATCTCAGGCTGCCCAGTTCTCGAAAGCTTAACTAT 560
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 489 CAACGATTTGGCTTTCGAAATGCTCATCTCTGGCTGCCCAGTTCTCGAAAGCTTAACTAT 548
Query 561 AGAGAGGAGTGCCTGTGATAATGTAGATTATTTACGGGTGTGCTCTCAGTCTCTATTGAG 620
| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 AAAGAGGAGTGCTTGTGACAATGTAGATTATTTACGTGTGTGCTCTCAGTCTCTATTGAG 608
Query 621 TTTCACCCTTCTTGGCCACTGTAACGAAGATATGAATAAAGAACAAGTAGTTGCAATAGA 680
|||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 609 TTTCACCCTTGTTGGCCACTGTAACGAGGATATGGTTAAAGAGCAAGTAGTTGCAATAGA 668
Query 681 TGCTCACAAGCTTGAGTATCTCAAGCTATATTGTCATGAAACTGCAAGTTTCATAATAAA 740
||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 TGCTCCCAGGCTTGAGGATCTCAAGCTTTATTGTCATGAAACTGCAAGTTTCATAATAAA 728
Query 741 TAATCCGGCTTCCCTCGTTAAGATGGCCATCGACATTAGGTTTAACTTGTCTTTCGAAAA 800
|||||||||||||| |||||||||| ||||||||||| |||||||||||||| |||| |
Sbjct 729 GAATCCGGCTTCCCTTGTTAAGATGGACATCGACATTATGTTTAACTTGTCTTCCGAACA 788
Query 801 GAGGTTTGATCCCAA-TGATCTACCAAAGAGAAATATGATTCGTAATTTTCTCATTGGGA 859
|| |||||| ||||| |||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 789 GAAGTTTGA-CCCAAATGATCTACCAAAGAGAAATATGATCCGTAATTTTCTCCTCGGGA 847
Query 860 TCTCTAATGTCAAAGAAATGGACATCTCTTCGTATACACTCGAGGCCATCTATAACTACT 919
||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||
Sbjct 848 TCTCTGGTGTCAAAGAAATGGAAATCTCTTCGCATACCCTCGAGGTCATCTATAATTACT 907
Query 920 CAAGATGTGAACGATTACCCTTATTCCGTAACCTATCTTCCTTGCATGCTGACTTCGACG 979
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 908 CAAGATGTGAACGATTACCCGTATTCCGTAACTTATCTTCCTTGCATGCTGACTTCGACG 967
Query 980 ACTGCAGG-G--A--T-TT---AG--T--A--AAT-CTCCAGGGGAGGAGCCAATTAGTA 1023
||| |||| | | | || || | | || ||||||||||||||||||||||||
Sbjct 968 ACTACAGGTGGGAAATGTTGCCAGGATTTAGTAAAACTCCAGGGGAGGAGCCAATTAGTA 1027
Query 1024 TTTTACCTGAACCTCATTGTAACCTACC 1051
||||||||| |||||| || ||||||||
Sbjct 1028 TTTTACCTGGACCTCAGTGCAACCTACC 1055
Score = 283 bits (153), Expect = 2e-75
Identities = 169/176 (96%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 1062 AACAGAATTGGAACTAATGAGTTACTTTCTGGAGAACTCAACAATCCTCAAGAAACTAAC 1121
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1101 AACAGAATTGAAACTAATGAGTTACTTTCTGGAGAAGTCAACAATCCTCAAGAAACTAAC 1160
Query 1122 ACTACGCTTGGGTAG-TTTCAGAGGAAATGAAGAATCTGCCTTCCTCAAGAAACTCCTTA 1180
||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1161 ACTACGCTTGGGT-GATTTCAGAGGAAATGAAGAATCTGCCTTGCTCAAGAAACTCCTTA 1219
Query 1181 CCATTCCAAGACTCTCTAGCTCATGCCAAGTTGTCA-TTCTCTGATCCTCATAGTC 1235
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1220 CCATTCCAAGACTCTCTAGCTCATGCCAAGTTGT-AGTTCTCTGATCCTCATAGTC 1274
> AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:29613122-29614695 REVERSE LENGTH=1377
Length=1377
Score = 281 bits (152), Expect = 9e-75
Identities = 432/561 (77%), Gaps = 44/561 (8%)
Strand=Plus/Plus
Query 441 TCCCAAGTCCGTTTCTTTACCTTGTGTCAAAGTTA-TGCATCT-AGATATTGTTAAGTTT 498
|||||||| ||||||||||||| | | |||| | | ||||| || ||| |||||||||
Sbjct 501 TCCCAAGTTTGTTTCTTTACCTTCTCTTAAAG-AACTCCATCTAAG-TATAGTTAAGTTT 558
Query 499 GCCAACGAT-TGGGCTTTCGAAATGCTCATCTCA-GGCTGCCCAGTTCTCGAAAGCTTAA 556
||| || || | ||| || |||| ||||||||| | ||||||||||| |||| | |||
Sbjct 559 GCCGACCATAT-GGCGTTGGAAACACTCATCTCACAG-TGCCCAGTTCTAGAAAACCTAA 616
Query 557 CTAT-AGAGAGGAGTGCCTGTGATAATGTAGATTATTTACGGGTGTGC--TCTCAGTCTC 613
||| | | |||||| ||||||| || | || |||||| |||||| |||||||| |
Sbjct 617 ATATCA-ACAGGAGTTTCTGTGATGATTTTGA--ATTTACATGTGTGCGTTCTCAGTCAC 673
Query 614 TATTGAGTTTCACCCTTCTT--GGCCACTGTAACGAAGAT-ATGAATAAAGAACAAGTAG 670
||||||| ||||| | | || || ||||| | ||| || ||||| |||| | |||||
Sbjct 674 TATTGAGCTTCACTCATGTTGCGGACACTG--ATGAA-ATGTTGAATGAAGATCTAGTAG 730
Query 671 TTGCAATAGATGCTCACAAGCTTGAGTATCTCAAGCTATATTG-TCAT-GAAACTGCAAG 728
| ||||| ||||| | ||||||| ||||||| | ||| | || |||| | | ||||||
Sbjct 731 TCGCAATTGATGCCCCCAAGCTTAAGTATCTGAGGCT-CAGTGATCATCG-TATTGCAAG 788
Query 729 TTTCATAATAAATAATCCGGCTTCCCTCGTT-AAGATGGCCATCGACATTAG-GTTTAAC 786
||| ||| ||||| ||| ||||||||| ||| ||| | | ||||| | | | ||||||
Sbjct 789 TTTTATACTAAATGATCTGGCTTCCCTTGTTGAAGCT-GATATCGATACT-GTCTTTAAC 846
Query 787 TTGTCTTTCG-AA-AAGAGGTTTGATCCCAATGATCT-ACCAAAGAGAAATATGATTCGT 843
||| ||| | || |||| ||| |||| |||||||| | ||| |||||||||||||||
Sbjct 847 TTG-ATTT-GCAAGAAGATGTTCAATCCAAATGATCTGAATAAA-AGAAATATGATTCGT 903
Query 844 AATTTTCTCATTGGGATCTCTAATGTCA-AAGAAA--TGGA-CATCTCTTCGTA-TACAC 898
|||||||| | ||||||||| | | || || ||| | || |||| |||| | ||| |
Sbjct 904 GATTTTCTCGTCGGGATCTCT-A-G-CATAA-AAACTTTGATCATCGCTTC-AAGTACTC 958
Query 899 TCGAGGCCATCTATAACTACTCAAGATGTGAACGATTACCCTTATTCCGTAACCTATCTT 958
| |||| ||| ||| | |||||||||||||| | | ||||||||||||||||||||||||
Sbjct 959 TTGAGGTCATTTATGATTACTCAAGATGTGAGCCACTACCCTTATTCCGTAACCTATCTT 1018
Query 959 CCTTGCATGCTGACTTCGACG 979
|||||| || ||||||| |||
Sbjct 1019 CCTTGCGTGTTGACTTCTACG 1039
> AT4G13985.1 | Symbols: FBD1 | FBD-associated F-box protein |
chr4:8080118-8081669 REVERSE LENGTH=1380
Length=1380
Score = 183 bits (99), Expect = 3e-45
Identities = 440/596 (74%), Gaps = 57/596 (10%)
Strand=Plus/Plus
Query 416 ATCTCTCTGACGTGAT-CTT-CAATAATCCCAAGTCCGTTTCTTTACCTTGTGTCAAAGT 473
|||||| |||||| || ||| | ||||| | ||| || |||||||||| |||||||
Sbjct 482 ATCTCTATGACGT-ATACTTGC-CTAATCGCGAGTTTGTGTCTTTACCTTCCCTCAAAGT 539
Query 474 TATGC-ATCTAGATATTGTTAAGTTTG-CCAACGATTGGGCTTTCGAAATGCTCATCTCA 531
||| | ||||||| ||| ||||| | || |||| |||||||||||||| |||||
Sbjct 540 TAT-CGTTCTAGATGCAGTTGTGTTTGACGAA-GATTTCGCTTTCGAAATGCTGGTCTCA 597
Query 532 GGCTGCCCAGTTCTCGAAAGCTTAACTATAGAGAGGAGTGCCTGTGAT--A-ATGT-AGA 587
||||||||||||||||||||||||| | || | | || | || ||| | || | |||
Sbjct 598 GGCTGCCCAGTTCTCGAAAGCTTAAGTGTAAACAAGATTAACT-TGAACGACATTTCAGA 656
Query 588 TTA-T-TTACGGGTGTGCT-CTCAGTCTCTATTGAGTTTCACCCT-TCTTGGCCACTGTA 643
| | || | |||| || | |||||||||||||| |||| | | ||| | | | |
Sbjct 657 A-AGTGTT-CAAGTGT-CTTCGCAGTCTCTATTGAGCTTCAGT-TATGTTG-C-A--G-A 707
Query 644 ACGAAGATATGAATAAAGAACAAGTAGTTGCAATAGATGCTCACAAG-CTTGAGTATCTC 702
||| ||| || || | || ||||| ||| ||||||| | || ||| | |||||
Sbjct 708 -CGATGAT--GATTAT----CTAGAAGTTGTAATTGATGCTC-CTAGGCTTCACTATCTA 759
Query 703 AAGCT-ATATTG-TCAT-GAAACTGCAAGTTTCATAAT-AAATAATCC-GGCTTCCCT-C 756
||||| | || | | | ||| |||||||||| ||||| ||| |||| |||| |||| |
Sbjct 760 AAGCTCA-AT-GATAAACGAA-CTGCAAGTTTTATAATGAAA-AATCATGGCT-CCCTTC 814
Query 757 GTTAAGATGGCCATCGACATTAG-GTTTAACTT-GTCTTTCGAAAAGAGGTTTGATCCCA 814
||||| || || || || | ||||||||| | || |||| | | ||| ||||| |
Sbjct 815 -TTAAGGCGGATATTGATTTT-GTGTTTAACTTAGG-TTCCGAATATATGTTCGATCCAA 871
Query 815 ATGATCTACCAAAGAGAAATATGATTCGTAATTTTCTCATTGGGATCTCTAATGTCAAAG 874
|| ||||||||| |||| |||| |||||| | ||||| | || | ||| ||| ||||
Sbjct 872 ATTATCTACCAACGAGACATATAATTCGTGACTTTCTTGTCGGTTTATCTGGTGTTAAAG 931
Query 875 AAATGGA-CATCTCTTCGTA-TACACT-CGAGGCCATCTATAACTACTCAAGATGTGAAC 931
| ||| | |||||||||| | ||| || | ||| ||| ||| | ||||||||||||||||
Sbjct 932 ATATG-ATCATCTCTTCG-AGTACTCTTC-AGGTCATATATGATTACTCAAGATGTGAAC 988
Query 932 GATTACCCTTATTCCGTAACCTATCTTCCTTGCATGCTGACTTCGACGACTGCAGG 987
| |||||||||||||||| |||||| ||||| || ||| |||| ||||| ||||
Sbjct 989 AACTACCCTTATTCCGTAATGTATCTTTCTTGCGTGTTGAATTCGCCGACTACAGG 1044
Score = 176 bits (95), Expect = 4e-43
Identities = 135/154 (88%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 1073 AACTAATGAGTTACTTTCTGGAGAACTCAACAATCCTCAAGAAACTAACACTACGCTTGG 1132
||||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1229 AACTAGTGAGTTACTTTCTAGAGAACTCAACAATCCTCAAGAAACTCACACTATGCTTAC 1288
Query 1133 GTAGTTTCAGAGGA-AATGAAGAATCTGCCTTCCTCAAGAAACTCCTTACCATTCCAAGA 1191
||| |||||| || || |||||||||| | || ||||||||||||||||||||||||||
Sbjct 1289 GTAACTTCAGA-GAGAAGGAAGAATCTGTCATCGTCAAGAAACTCCTTACCATTCCAAGA 1347
Query 1192 CTCTCTAGCT-CATGCCAAGTTGTCATTCTCTGA 1224
|||||| || ||||||||||| || ||||||||
Sbjct 1348 CTCTCTC-CTTCATGCCAAGTTTTCGTTCTCTGA 1380
> AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:26191640-26193174 REVERSE LENGTH=1356
Length=1356
Score = 171 bits (92), Expect = 2e-41
Identities = 179/220 (81%), Gaps = 9/220 (4%)
Strand=Plus/Plus
Query 85 AGCAAATTACCAGATCCATTGCTATGTCAGGTACTCTTGAATCTTCCCACAAAAGATGTG 144
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
Query 145 GTTAAGACTAGTGTGTTATCCAGTAGATGG-GAAAATATCTGGAGA-AGTGTACCTGGTT 202
|||||||||||||| |||||| |||||||| |||| | |||||| | | ||||||||||
Sbjct 121 GTTAAGACTAGTGTTTTATCCCGTAGATGGAGAAA-TCTCTGGAAACAC-GTACCTGGTT 178
Query 203 TGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTT-TGTGAGCTTTGTTGATAGC 261
| ||| | | || ||| |||| |||| |||| | || | |||| ||||||||||||
Sbjct 179 TAGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCT-TGAGTTTTGTTGATAGC 237
Query 262 TTTCTGGGTTTTAACCGCGAATC-TTGCCTGCAAAA-TTT 299
||||| | ||| ||| | ||||| || | | ||||| |||
Sbjct 238 TTTCTCGATTTCAACAGTGAATCATT-CTTACAAAAATTT 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5