BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477038
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78760.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1991 0.0
> AT1G78760.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:29615174-29616738 REVERSE LENGTH=1359
Length=1359
Score = 1991 bits (1078), Expect = 0.0
Identities = 1264/1356 (93%), Gaps = 4/1356 (0%)
Strand=Plus/Plus
Query 1 ATGGATAGAGGAGGAGATGCGAAACGTGAAAGAAGAAGCGATGAGGATAGGCTGAGCAAC 60
||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATACAGGAGGAGATGAGAAACGTGCAAGAAGAAGCGAAGAGGATAGGCTGAGCAAC 60
Query 61 TTACCAGAATCCTTACTATGTCAGATAATGTTGAATATCCCCACCAAGGATGTGGTTAAG 120
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTACCAGAATCCTTAATATGTCAGATAATGTTGAATATCCCCACGAAGGATGTGGTTAAG 120
Query 121 AGTTGTGTGTTATCCAGAAGATGGAGAAACCTCTGGAGATATGTTCCTGGTTTGAACGTG 180
||| |||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 AGTAGTGTCTTATCCAAAAGATGGAGAAATCTCTGGAGATATGTACCTGGTTTGAACGTG 180
Query 181 GAGTACAGTGAATTTCTAGACTATAACGCTTTCGTGAGTTTTGTTGATAGGTTCCTGGGT 240
||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 181 GAGTACAATCAATTTCTAGACTATAATGCTTTCGTGAGTTTTGTTGATAGGTTTCTGGCT 240
Query 241 GTAGAGAGAGAGTCTTGCTTCGAACGTTTTAGGTTAAGGTACGATTGTGATGAAGAAGAG 300
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGACAGAGAGTCTTGCTTCCAAAGTTTTAGGTTAAGGTACGATTGTGATGAAGAAGAG 300
Query 301 CGCACGATTTCTATTGTCAAGCGGTGGATCAACATTGTCGTCAACCAAAAACTTAAAGTT 360
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGCACTATTTCTAATGTCAAGCGGTGGATCAACATTGTCGTCGACCAAAAACTTAAAGTT 360
Query 361 CTCGACGTTTTGGACTACACTTGGGGGAATGAGGAAGTCCAGATACCTCCATCCGTTTAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGACGTTTTGGACTACACTTGGGGGAATGAGGAAGTCCAGATACCTCCATCCGTTTAC 420
Query 421 ACATGCGAGAGCTTGGTGTCTATGAAGCTCTGTAATGTGATCTTGCCTAATCCTCAGTTT 480
||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||
Sbjct 421 ACATGCGAGAGCTTGGTGTCTTTAAAGCTCTGTAATGTGATCTTGCCTAATCCTAAGGTT 480
Query 481 ATATCTTTGCCTTTGGTCAAAGCTATTGAGCTTGATATAGTTAAGTTTGCCAATGCTTTG 540
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 481 ATATCTTTGCCTTTGGTCAAAGTTATTGAGCTTGATATAGTTAAGTTTTCCAATGCTTTG 540
Query 541 GTGTTGGAAAAGCTCATCTCAAGCTGTTCAGCTCTTGAAAGCTTGATTATAAGCAGGAGT 600
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTTTGGAAAAGATCATCTCAAGCTGTTCAGCTCTTGAAAGCTTGATTATAAGCAGGAGT 600
Query 601 TCCGTTGATGATATAGATGTTTTACGTGTCCGTTCTCGGTCTCTACTGAGATTCAAACAT 660
||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 TCCGTTGATGATATAAATGTTTTACGTGTTAGTTCTCGGTCTCTACTGAGCTTCAAACAT 660
Query 661 ATTGGTAACTGTTCTGATGGTTGGGATGGATGCGAAGTTGCTATTGATGCTCCTAAGCTT 720
||||| ||||||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 661 ATTGGCAACTGTTCTGACGGTTGGGATGAATTAGAAGTTGCAATTGATGCTCCTAAGCTT 720
Query 721 GAGTATCTGAACATCAGTGATCATTCAACCGCAAAGTTCAGAATAAAGAATTCGGGTTCT 780
||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||
Sbjct 721 GAGTATCTGAACATCAGTGATCATTCAACTGCAAAATTCAAAATGAAGAATTCGGGTTCT 780
Query 781 CTTGTTGAGGCGAATATCAATATCATATTTAATATGGAAGAGCTACCAG-ATCCAAATAA 839
||||| |||||||| |||||||| ||||||||||||||||||||||| | |||||||| |
Sbjct 781 CTTGTGGAGGCGAAGATCAATATTATATTTAATATGGAAGAGCTACC-GCATCCAAATGA 839
Query 840 TCGGCCAAAGAGAAAAATGATTCGAGATTTTCTCGCCGAGATCTCTACTGTCAAAACATT 899
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 840 TCGGCCAAAGAGAAAAATGATTCAAGATTTTCTCGCCGAGATCTCTAGTGTCAAAAAATT 899
Query 900 GTTCATCTCTTCGCATACTCTTGAGGTTATAT-TCGATTCGAGTTGTGAACTACCAGTAT 958
||||||||||||||||||||||||||||||| | |||| | | ||||||||||| |||
Sbjct 900 GTTCATCTCTTCGCATACTCTTGAGGTTATACAT-GATTTGGGGTGTGAACTACCCTTAT 958
Query 959 TTCATAACCTATCTTCCTTGCACATAGACTTCGAAGACCACAGCTTGAAAATGTTGTCCA 1018
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 TTCGTAACCTATCCTCCTTGCACATAGACTTCGAAGACCACACCTTGAAAATGTTGTCCA 1018
Query 1019 CGTTTCTCCAGAGCTGCCCAAATCTAAAATCTCTTGTCGTGGAATTTAAGGATTCCTCAG 1078
| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1019 CCTTTCTCCAGAGCTGCCCAAATGTTAAATCTCTTGTCGTGGAATTTAAGGATTCCTCAA 1078
Query 1079 AAGAGGACGGAGTTGGAGTTTTATCCATACCTCTGTGTTTCTTAACAACACTCGAGTATG 1138
|||||||||||| | |||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct 1079 AAGAGGACGGAGATAGAGTTTTATCCATACCTCGGTGTTTCTTCACAACTCTCGAGTATG 1138
Query 1139 TTAAGATAGAAAGGCCAATCACAGGGGAGGCGAGGGGGATGAAACTAGTTAGTTACATTT 1198
|||||||||| |||||||||||||| ||||| ||||| |||||| |||||||||||||||
Sbjct 1139 TTAAGATAGAGAGGCCAATCACAGGAGAGGCAAGGGGAATGAAAGTAGTTAGTTACATTT 1198
Query 1199 TGGAGAATTCACCAATCCTCAAGAAACTGACTCTAAGCTTGAAGAGTTCCAGAGAGAACG 1258
|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1199 TGGAGAATTCACCAATCCTCAAGAAACTGAATCTGTGCTTGAATAGTTCCAGAGAGAAAT 1258
Query 1259 AAGAATCTGTCATTCTCAAAGAACTCCTTACGGTTCCAAGACTCTCTACCTCATGCAAAG 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 CAGAATCTGTCATTCTCAAAGAACTCCTTACAATTCCAAGACTCTCTACCTCATGCAAAG 1318
Query 1319 TTGTCGTTTCTGATCCTCGTAGTTGTTGGTTACTTG 1354
|||| |||| ||| ||||||||||||||| ||||||
Sbjct 1319 TTGTTGTTTTTGAACCTCGTAGTTGTTGGGTACTTG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5