BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477039
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78770.1 | Symbols: APC6 | anaphase promoting complex 6 | ch... 3157 0.0
AT1G78780.2 | Symbols: | pathogenesis-related family protein |... 187 4e-46
> AT1G78770.1 | Symbols: APC6 | anaphase promoting complex 6 |
chr1:29616919-29621447 FORWARD LENGTH=2308
Length=2308
Score = 3157 bits (1709), Expect = 0.0
Identities = 1918/2018 (95%), Gaps = 17/2018 (1%)
Strand=Plus/Plus
Query 231 TACACAATGGGCCTAAAGCCCATATATTATGGAAGG-GAAAT-AAGGAATCACACTCCCG 288
|||| ||||||||| |||||||||| ||| ||||| | || || ||| |||||||||
Sbjct 293 TACATAATGGGCCT-AAGCCCATAT-GTATAGAAGGTGGGATAAAATAATTACACTCCCG 350
Query 289 CCGAGGCTCTTCCCTTGTCCCGAAGCCTCTCTCGCTCAAACACTTCCGACTGGAGAAAGC 348
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
Sbjct 351 CCGAGGCTCTTCCCTTGTCCC---GCCTCTCTCGCTCAAACACTTTTGACTAGAGAAATC 407
Query 349 GGACGAAC-AAAATTTCCCAATAATCTT---C--C-GTTTTTGTTACGATCACTGCTTAG 401
||| |||| |||||||||| |||||||| | | |||||||||||||| |||||||
Sbjct 408 GGAAGAACAAAAATTTCCCGATAATCTTCCCCAACTTTTTTTGTTACGATCTTTGCTTAG 467
Query 402 ATTTCGTCTGGGAGAATTCGAGAGGCGAGGCAATTATGAGGGAAGAAGAAATTGAGAAGA 461
||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 468 ATTTCGTCTGGAATAATTCGATAGGCGAGGAAATTATGAGGGAAGAAGAAATTGAGAAGA 527
Query 462 TCCGAGGCGTGGTTCGAGACTGCGTCAGTAAGCATTTGTATTCGTCAGCCATCTTCTTCG 521
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 528 TCCGAGGCGTGGTTCGAGACTGCGTCAGTAAGCATTTGTACTCGTCGGCCATCTTCTTCG 587
Query 522 CCGACAAGGTAGCGGCTCTTACCAATGATCCAGCTGACATATATATGCAAGCTCAAGCTC 581
||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 588 CCGACAAAGTAGCAGCTCTTACCAATGACCCATCTGACATATATATGCAAGCTCAAGCTC 647
Query 582 TATTCCTCGGCCGCCATTACCGTCGCGCCTTTCACCTTCTTAACGCTTCTAAGATTGTCC 641
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 648 TTTTCCTCGGCCGCCATTACCGTCGCGCTTTTCACCTTCTTAACGCTTCTAAGATTGTCC 707
Query 642 TCCGAGATCTTCGATTCCGTTACCTCGCCGCCAAGTGCCTCGAGGAATTGAAGGAGTGGG 701
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 708 TCCGAGATCTTCGATTCCGTTACCTCGCCGCAAAGTGCCTCGAGGAATTGAAGGAATGGG 767
Query 702 ATCAGTGTCTCTTGATGCTTGGTGATGCGAAGGTTGATGAAGATGGAATTGTGTATGATG 761
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 768 ATCAGTGTCTATTGATGCTTGGTGATGCGAAGGTTGATGATGATGGAATTGTGTATGATG 827
Query 762 CTAAAGACGGGAACGTGATAGATTTTGATAAAGATGGAGAGGACCGAGAGATAAATATAT 821
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 828 CTAAAGACGGGAACGTGATAGATTTTGATAAAGATGGAGAGGACCGAGAGATTAATATAT 887
Query 822 CATCAGCAATATGCTTTCTTAGAGGAAAAGCATACGGAGCCTTACAAAACCGTTCTCAGG 881
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 888 CATCGGCGATATGCTTTCTAAGAGGAAAAGCATACGGAGCCTTACAAAACCGGTCTCAGG 947
Query 882 CTCGACAATGGTACAAAGCTGCGATAAAGGCTGATCCTCTGTGCTATGAGGCTTTGGAAT 941
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 948 CTCGACAATGGTACAAAGCTGCTATCAAGGCTGATCCTCTGTGCTATGAGGCTTTGGAAT 1007
Query 942 GCCTGATTGAAAGTCATATGCTTACATCTGAAGAAGAATCGAGTCTGCTTTCGTCACTGC 1001
|||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1008 GCCTTATTGAGAGCCATATGCTTACATCTGAAGAAGAATCGAGTCTGCTTTCTTCACTAC 1067
Query 1002 AATTTAGTCCAGAAGACGGATGGCTCTCTTCTTTCTATTCATGCTTGATAAAGAAGTATG 1061
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1068 AATTTAGTCCAGAAGACGGATGGCTCTCTTCTTTCTATTCATGCTTGATTAAGAAGTATG 1127
Query 1062 ACAAAGAGAACACGGTAGAACTCAAGTTCAAGAAGCTTGAGAACGAGACTAGTGGTAGTG 1121
||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1128 ACAAAGAGAGCACAGTAGAACTCAAGTTTAAGAAGCTTGAGAATGAGACTAGTGGTAGTG 1187
Query 1122 TCTCTGGCTCATCTATGATCACGTTGGCTAATAACACTGATCTGTTGGCCTGTAAAGCTG 1181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1188 TCTCTGGCTCATCTATGATCACATTGGCTAATAACACTGATCTGTTGGCCTGTAAAGCTG 1247
Query 1182 AGTACTACCATCAATGCTGTGAATATCAAAAGTGTTTCGAACTAACCGCTGCACTCCTTG 1241
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1248 AGTACTACCATCAATGCTGTGAATATCAGAAGTGTTTTGAACTAACCGCGGCACTCCTTG 1307
Query 1242 AGAAAGATCCTTTTCATCTGAAGTGTAC-CTTGGTACATTTGGCCGCTGCCATGGAACTT 1300
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1308 AGAAAGATCCTTTTCATCTGAAGTGTACGC-TGGTACATTTGGCCGCTGCCATGGAACTT 1366
Query 1301 GGTAATTCAAATGAGCTCTATCTGATGGCGTGCAATTTGGTAAAAGACTACCCTTCGAAG 1360
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1367 GGTAATTCAAATGAGCTCTATCTAATGGCGTGCAATTTGGTTAAAGACTACCCTTCGAAG 1426
Query 1361 GCGCTGTCATGGTTTGCTGTGGGCTGTTACTACTATTGTATTAAAAAGTATGCTGAAGCT 1420
||| |||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1427 GCGTTGTCTTGGTTTGCGGTGGGTTGTTACTACTATTGTATCAAAAAGTATGCTGAAGCT 1486
Query 1421 CGGCGGTACTTTAGCAAAGCTACGAGTATAGATGGCTCATTCTCACCAGCTTGGATAGGT 1480
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1487 CGGCGGTACTTTAGCAAAGCTACGGGTATTGATGGCTCATTCTCACCAGCTCGGATAGGT 1546
Query 1481 TATGGTAATTCCTTTGCCGCCCAAGAAGAGGGTGACCAAGCCATGTCTGCCTATCGCACT 1540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1547 TATGGTAATTCCTTTGCCGCCCAAGAGGAGGGTGACCAAGCCATGTCTGCCTATCGCACT 1606
Query 1541 GCCGCTAGGCTATTTCCAGGGTGTCATTTGCCAACTCTGTACATTGGAATGGAGTATATG 1600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GCCGCTAGACTATTTCCAGGGTGTCATTTGCCAACTCTGTACATTGGAATGGAGTATATG 1666
Query 1601 CGAACTCACAGCTACAAGCTTGCGGACCAGTTTTTCATGCAAGCAAAGGCGATATGCCCT 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CGAACTCACAGCTACAAGCTTGCGGACCAGTTTTTCATGCAAGCAAAGGCGATATGCCCT 1726
Query 1661 TCAGATCCACTTGTTTATAATGAACTCGGAGTTGTTGCATATCATATGAAAGAGTATGGT 1720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TCGGATCCACTTGTTTATAATGAACTCGGAGTTGTTGCATATCATATGAAAGAGTATGGT 1786
Query 1721 AAAGCTGTGCGGTGGTTTGAGAAGACGTTGTCCCATATACCATCTGTATTAACTGAAACC 1780
|||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||
Sbjct 1787 AAAGCTGTGCGGTGGTTTGAGAAGACATTGGCCCATATACCATCTGCATTAACTGAATCC 1846
Query 1781 TGGGAACCAACTGTGGTCAATCTCGCTCATGCATATAGAAAGCTAAGAAAGGACCGTGAA 1840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1847 TGGGAACCAACTGTGGTCAATCTTGCTCATGCATATAGAAAGCTAAGAAAGGACCGTGAA 1906
Query 1841 GCTATCTCATATTATGAAAGAGCACTTACACTATCAACCAAAAGCTTAAGCACTTATTCC 1900
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1907 GCTATCTCCTATTATGAAAGAGCACTTACACTATCAACTAAAAGCTTAAGCACTTATTCC 1966
Query 1901 GGCTTGGGTTACACTTACCATTTGCAGGGGAATTTCTCTGCTGCCATCTCATATTATCAC 1960
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1967 GGCTTGGCTTACACTTACCATTTGCAGGGGAATTTCTCAGCTGCCATCTCATATTATCAC 2026
Query 1961 AAGGCCTTGTGGTTGAAACCTGATGATCAATTCTGTACTGAGATGTTGAACGTGGCTCTC 2020
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 2027 AAGGCCTTGTGGTTGAAACCTGATGATCAATTTTGTACGGAAATGTTGAACGTGGCTCTC 2086
Query 2021 ATGGATGAATGTCAGAACGGGGTTGATGCAAAGGTTGAGCTCTGCTAGAAATTGGTCAGT 2080
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2087 ATGGATGAATGTCAGAACGGGGTTGATTCAAAGGTTGAGCTCTGCTAGGAATTGGTCAGT 2146
Query 2081 TAAA-TTAACCGCCTTATTCTAGTTCTTGTTGTAATTTATCTGTACTATTATCATTGTGA 2139
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2147 TAAAATTAACCGCCTTATTCTAGTTCTTGTTGTAATTTATCTGTACTATCATCATTGTGA 2206
Query 2140 CGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTACAATATA 2199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 CGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTACAATATA 2266
Query 2200 TTCTTTAAAGGGTCAAATACACTTCTGCTTTTCTTATT 2237
|||||||||||||||||||||||||| |||||||||||
Sbjct 2267 TTCTTTAAAGGGTCAAATACACTTCTACTTTTCTTATT 2304
> AT1G78780.2 | Symbols: | pathogenesis-related family protein
| chr1:29621340-29622447 REVERSE LENGTH=840
Length=840
Score = 187 bits (101), Expect = 4e-46
Identities = 103/104 (99%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 2134 TTGTGACGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTAC 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGTGACGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTAC 781
Query 2194 AATATATTCTTTAAAGGGTCAAATACACTTCTGCTTTTCTTATT 2237
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 AATATATTCTTTAAAGGGTCAAATACACTTCTACTTTTCTTATT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110993404995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5