BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477043
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78800.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2204 0.0
> AT1G78800.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:29625659-29627989 REVERSE LENGTH=1460
Length=1460
Score = 2204 bits (1193), Expect = 0.0
Identities = 1330/1396 (95%), Gaps = 9/1396 (1%)
Strand=Plus/Plus
Query 45 AAATGGGGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 104
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 AAATGGCGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 106
Query 105 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCGGTTGAGCTTGCGTCGCATGGTCATA 164
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 107 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCCGTTGAGCTTGCCTCGCACGGTCATA 166
Query 165 ATGTTCATGTCTTTACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTATCCG 224
| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 167 AAGTTCATATCTTCACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTTTCCG 226
Query 225 GTATCTTTCGAGTTACGGTGTATGGATCTTTCCTGCCACGGCACATTTTCTACCGACTAC 284
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 227 GTATCTTTCAAGTTACGGTGTATGGATCTTTCCTGCCACGGCATATTTTCTACCGACTAC 286
Query 285 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 346
Query 345 CTTCGTTCGATGTTATACTAGCAGACCAGGTTTCAGTCGTAGTCCCAGTGCTGAAACTCA 404
|||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 347 CTTCATTCGATGTTGTACTAGCAGACCAAGTTTCAGTCGTAGTCCCATTGCTGAAACTCA 406
Query 405 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCCGATCTCTTGCTAGCTAAGCATA 464
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 407 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCGGATCTCTTGCTAGCTAAGCATA 466
Query 465 CAACAGCACTTAGACGGATGTATCGGAAACCCATTGATTTCATCGAAGAACAAACCACAG 524
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 467 CAACAACACTTAGACGGATGTATCGGAAACCCATTGATTTCATTGAAGAACAAACAACAG 526
Query 525 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 586
Query 585 TTCAAAGGCTAAATGCACAAGGAAATCGCCCAGCTGTTCTTTACCCAGCAGTCAATATCG 644
|| ||||||||||||||||||| | |||||||||||| |||||||| ||||||||||| |
Sbjct 587 TTAAAAGGCTAAATGCACAAGGGAGTCGCCCAGCTGTACTTTACCCCGCAGTCAATATTG 646
Query 645 ATCAGTTCAATGAATCCCATACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 704
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATCAGTTCATTGAACCCCACACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 706
Query 705 GGAAAAAGAACATCGATCTAGCCGTTTCAGCTTTTGCTATGCTATGCAAACATAAGCAAA 764
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 707 GGAAAAAGAACATCGATCTAGCTGTTTCAGCTTTTGCTATCCTATGCAAACATAAGCAAA 766
Query 765 ATCTGAGTGATGTTACCCTTACCGTTGCAGGCAAGTGTGGATATGATGAGCGGCTGAAGG 824
|||||||||||||||||||||||||| || || |||||||||| ||||| ||||||
Sbjct 767 ATCTGAGTGATGTTACCCTTACCGTT----GC-AG-GTGGATATGACGAGCGATTGAAGG 820
Query 825 AGAATGTGGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTTTGATC 884
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 821 AGAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTCTGATC 880
Query 885 GAGTCAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 944
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GAGTTAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 940
Query 945 TGTGCGTTCTCTACACGCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1004
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGTGCGTTCTCTACACCCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1000
Query 1005 CTGCATACAAACCTGTGATAGCCTGCAACAGCGGTGGCCCCGTGGAGACGGTAAAGAATG 1064
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1001 CTGCATACAAACCCGTGATAGCCTGCAACAGTGGTGGCCCCGTGGAGACGGTAAAGAATG 1060
Query 1065 GAGTAACAGGCTATCTTTGTGAACCGACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1061 GAGTAACAGGCTATCTTTGTGAACCAACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1120
Query 1125 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAATCATGTCGTTG 1184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1121 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAACCATGTCGTTG 1180
Query 1185 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1240
Query 1245 CAAGTCCTAAAGAAGATTGAGATTCGTCTGTTTAGCGATCATAGATTGTTCGTTAAACAG 1304
||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||
Sbjct 1241 CAAGTCCTAAAGAAGATTGAGATTCCTCTGTTTAGTAATCATAGATCGTTCGTGAAACAG 1300
Query 1305 CATACTTTAGGCTTAGGTCTGAAACTACAGGAGCTTTATTGTTGGGATCAATCATGTTGA 1364
|||||||||||||||| ||||||||||||||||||||||| | || |||| |||| ||||
Sbjct 1301 CATACTTTAGGCTTAGTTCTGAAACTACAGGAGCTTTATTCTCGG-ATCACTCATCTTGA 1359
Query 1365 ACATGAAGATTGGTTAAATTTAGGTTGA-CAGTTTTGTGTTTGCGGATAAACTTGAGGAA 1423
| |||||||||||||||| ||||| || ||||||| |||||| ||||||| |||| |||
Sbjct 1360 CCGTGAAGATTGGTTAAATCTAGGT-GAACAGTTTTTTGTTTGAGGATAAATTTGACGAA 1418
Query 1424 ATAAAATCGAATCAGT 1439
||||||||||||||||
Sbjct 1419 ATAAAATCGAATCAGT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5