BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477045
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78810.1 | Symbols: | unknown protein; Has 75 Blast hits to... 2030 0.0
> AT1G78810.1 | Symbols: | unknown protein; Has 75 Blast hits
to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr1:29628269-29630553 REVERSE
LENGTH=1758
Length=1758
Score = 2030 bits (1099), Expect = 0.0
Identities = 1335/1445 (92%), Gaps = 32/1445 (2%)
Strand=Plus/Plus
Query 1 AACAAAGAATGATGAATCCTTACGACGATGAATCTCTGAAGCAAGAAGTAATCTACCTTC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 36 AACAAAGAATGATGAATATTTACGACGATGAATCTCTGAAGCAAGAAGTAATCTACCTTC 95
Query 61 ACTCGCTCTGGCACCAAGGTCCTCCGACCCGAAACCCAATCCCTAGCCC-----T-AA-- 112
|||| |||||||| ||||||||||| |||||||| |||||||||||||| | ||
Sbjct 96 ACTCCCTCTGGCATCAAGGTCCTCCTACCCGAAAACCAATCCCTAGCCCTAATTTCAACC 155
Query 113 T--TTCA--ACCCGATTCAACGACCCAGGTCGAATTACATCCCGCCGGCGGATTTGCAAC 168
| |||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 156 TGATTCACGACCCGATTCAACGACCCAGACCGAATTACATCCCGCCGTCTGATTTGCAAC 215
Query 169 TTCTCTCTCGCTATGGAGCTGTTACTCCACAGATCATATCTAGAAACCCTAACAATCCTC 228
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 216 TTCTCTCTCGCTATGGAGCTGTTACTCCACAGATCATATCCAGAAACCCTAATAATCCTC 275
Query 229 AAAATCTCTACAAT---AACAAGCGTCCGAGGTCC-GATTCGGGTCGAGAATGGCCCGTC 284
|||||||||||||| ||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct 276 AAAATCTCTACAATAACAACAAACGTCCTAGG-CCTGATTCGGGTCGAGAATGGCCCGTC 334
Query 285 AATGATGTGCTTCAGTCTCCTCCTACGGGATCGGGATGGCCTGAATACAGGCCGTGTAAA 344
||||| |||| |||| ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 335 AATGACGTGCCTCAGCCTCCTTCTACGGGATCTGGATGGCCGGAATACAGGCCGTGTAAA 394
Query 345 AAGGCGCGACCTGTTTCGGTGGAGGAGAAAGAGAAATTGGCTGCGAATATGCTTCAGAGG 404
||| | |||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 395 AAGACTCGACCTATTTCGGCCGAGGAGAAAGAGAAATTGGCGGCGAATATGCTTCAGAGA 454
Query 405 GATATTCATCGCACCTGTCGCGAGTTCTTCGGTAGAAAATCCGATGAAGAAGATAGCTCA 464
||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 455 GATATCCATCGCACCTGTCGCGAGTTCTTCGGTCGAAAATCCGGTGAAGAAGATAGCTCA 514
Query 465 GTCGCTGGAGGAGATGAATCTGAAGTCGATGAAGGAGACGAGGATCAGTCTACGGAGAAA 524
||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |||||||
Sbjct 515 GTCGCCGGAGGAGATGAATCGGAAATCGATGAAGGAGACGAAGATCAGTCTTTGGAGAAA 574
Query 525 GAAGAA---TCTTCTTCCAAGGAGTTCCAGTTTCTATCGAGAGTGTTTGAAGAGAATGTG 581
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 575 GAAGAATCTTCTTCTTCCAAGGAGTTTCAGTTTCTATCGAGAGTTTTTGAAGAGAATGTG 634
Query 582 AAGCTCAAGGAATACTATGAGAAGAGCACTGGGAATGGAGAGTTTTGGTGTTTGGTTTGT 641
||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 635 AAGTTGAAGGAATACTATGAGAAGAACACTGGGAATGGAGAGTTTTGGTGTTTGGTTTGT 694
Query 642 GGTGGCACTGGAGAGAAAAGTTGTAGGAAATTCAAGAGCTGCTTGGCTTTAATTCAGCAT 701
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 695 GGTGGCATTGGAGAGAAAAGTTGTAGGAAGTTCAAGAGCTGCTTAGCTTTAATTCAGCAT 754
Query 702 TCACTTGCGATTCACAAGACGGATTTGAAAACTCAGCATAGAGCTCTTGCACAAGTTGTC 761
|||||| | |||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 755 TCACTTACTATTCACAAGACGGATTTGAAAATTCAGCATAGAGCTCTCGCTCAAGTTGTC 814
Query 762 TGCAATGTTCTTGGCTGGGACGTTACCAATCCAGTTGCTTCTAGCCAAAGAGACGCTCAG 821
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||
Sbjct 815 TGCAATGTTCTTGGCTGGGACGTTAACAATCCAGTTGTTTCTAGCCAAAAAGATTCTCAG 874
Query 822 ACTGTTGTGGAAGGTGCATCTGAGCCGCCTTCAGACTCGAAGATTCCTCAGGAGAAACAA 881
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 ACGGTTGTGGAAGGTGCATCTGAGCCGCCTTCAGACTCGAAGATTCCTCAGGAGAAACAA 934
Query 882 CAGGTCATGTCGGTTGAAGAACACGCAAAGGCTGCTGTGTTACAAATGCAACAGAATGCA 941
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 935 CAGGTCATGTCGGTTGAAGAACACGCAAAGGCTGCGGTGTTACAAATGCAACAGAATGCA 994
Query 942 TCAGAAGCTTTGAAAGACATTTTCGCCAAGGATGGTACTAATTCAGTTGATGGAATTGAG 1001
||||||||||||||||||||||| | ||||||||||||| | ||| |||||||| ||||
Sbjct 995 TCAGAAGCTTTGAAAGACATTTTTGTCAAGGATGGTACTGGTGCAGCTGATGGAACTGAG 1054
Query 1002 GAGAAAG---A--A-AATTTGTCTGAGGAGTTGGAGTTAATATCTAGAGTCTTCTCAGAG 1055
||||| | | | ||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1055 GAGAACGGTGATGAGAATCTGTCTGAGGAGTTGGAGTTAATATCTAAAGTCTTCTCCGAG 1114
Query 1056 AATGTTGAGCTCAAGAGTTACTATGAGAAAAACTATGAAGGTGGAGCCTTTATCTGTCTG 1115
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1115 AATGTTGAGCTCAAGAGTTACTATGAGAAAAACTATGAAGGTGGAGCTTTTATCTGTCTG 1174
Query 1116 ATGTGTTGTGCTGCGACTGATACGAAGATGATAAAAAGATTCAAACACTGTTATGGAGTT 1175
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1175 GTGTGTTGTGCTGCGACTGATAAGAAGATGTTAAAAAGATTCAAACACTGTTATGGAGTT 1234
Query 1176 GTTCAACATTGTACTAAAGTACCGAAAATGAAAATACGAGCTCACAAGGCTTTT-GCTC- 1233
||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1235 GTTCAACATTGTACTAAAGTACCAAAAATGAAAATACGAGCTCACAAGG-TTTTCGCTCA 1293
Query 1234 GTTTTGTCTGTGAACTACTTGGCTGGGATTTTGAGCTTCTACCACGTAGAGAAATGAAAG 1293
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1294 GTTT-GTCTGTGAACTACTTGGCTGGGATTTTGAGCTTCTACCACGTAGAGTAATGAAAG 1352
Query 1294 GCGTTGCTTCTCTTGCTATATTTAATGCTAACGAGAACAATGAGAACCCATCA-CCTGTG 1352
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||
Sbjct 1353 GCGTTGCTTCTCTTGCTATATCTAATGCTAACGAGAACAATGAGAACACATCATCCA-TG 1411
Query 1353 GTAGAGGAACATATGTGCGAAGATAAAGCTGATAACCCACAGGACAACAATGAGGCTGAG 1412
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1412 GTCGAGGAACATATGTGCGAAGATAAAGCTGGTAACCCACAGGACAACAATGAGGCTGAG 1471
Query 1413 GCATG 1417
|||||
Sbjct 1472 GCATG 1476
Score = 226 bits (122), Expect = 6e-58
Identities = 202/236 (86%), Gaps = 23/236 (10%)
Strand=Plus/Plus
Query 1481 AGGCTTAATCATATTGTTTCTCTTCTACGTATTAAATTTAAGAGTC-AAG-----A-A-G 1532
||||||||||||||||||||||||||||||||| |||| ||||||| ||| | | |
Sbjct 1482 AGGCTTAATCATATTGTTTCTCTTCTACGTATTCAATTGAAGAGTCAAAGACTCAAGAGG 1541
Query 1533 CACAAAGTTATGTATATGGAAGGCACTGAATCTTCAGGTACGATCATATTTAGTCTTCGG 1592
||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||
Sbjct 1542 CACAAAGTTATGTATATGGAAGGCACTAAATCTTCAGGTACTAT--TATTTAGTTTTCGG 1599
Query 1593 CATCTTATCAAACTTCTCACGACTT--TA-T----T-A--A-TGACAATATGTATTAGTG 1641
||| ||||||||||||||||||||| || | | | | ||||||||||||||||||
Sbjct 1600 CATGTTATCAAACTTCTCACGACTTGGTAATGGAGTCATCAATGACAATATGTATTAGTG 1659
Query 1642 TACCCAACTTTTGATTCTCAGTTTGGATTA-TTAAAAAATATTCTCTTCTTTTCTC 1696
||| |||||||||||||| | ||| ||||| ||||||| |||||| ||||||||||
Sbjct 1660 TACTCAACTTTTGATTCTGAATTTTGATTAGTTAAAAA-TATTCTGTTCTTTTCTC 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5