BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477053
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78890.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1044 0.0
> AT1G78890.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16840.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:29656577-29658065 FORWARD LENGTH=802
Length=802
Score = 1044 bits (565), Expect = 0.0
Identities = 713/780 (91%), Gaps = 28/780 (4%)
Strand=Plus/Plus
Query 1 AATCTCTAAAATGGCTCGATCTTTCTCTCCTTCACTTTCTCTCTATAGATGCCGTTTCGC 60
|||||||| ||||||||||||||| ||||||||||||||||||| | ||| |||||||||
Sbjct 37 AATCTCTACAATGGCTCGATCTTTATCTCCTTCACTTTCTCTCTCTCGATACCGTTTCGC 96
Query 61 CGCAGC-T-TC-TCTTCTCCCTTCATCTCAAACCATCTTT-TTCCGATCTCAATCCTCGA 116
|||||| | || |||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 97 CGCAGCTTCTCTTCTTCTCCCTTCATCTCAAACCAT-TTTCATCCGATCTCAATCCTCCA 155
Query 117 ATCGCCGGTCTAA--C---CGAT-TCGGAGAAATCTACGAGATTGATATCGCTGCGGATC 170
|||| |||||||| | | || |||||| |||||||||||||||||||||||||||||
Sbjct 156 ATCGTCGGTCTAACTCTAACCATCTCGGAGTAATCTACGAGATTGATATCGCTGCGGATC 215
Query 171 CTCTTCTCCATAAGTTGGAAGATGCTGTCCACCGGATAATGGTACGCCGATCCGCACCAG 230
||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 216 CTCTTGTCAATAAGTTGGAAGATGCTGTCCACCGGATTATGGTACGCCGATCCGCACCTG 275
Query 231 ATTGGCTCCCTTTTGTTCCCGGTGCTTCGTATTGGGTTCCACCGCCTAGATCCCAGACTC 290
|||||||||||||||| ||||||||||| | |||||||||||| |||||||||||| |||
Sbjct 276 ATTGGCTCCCTTTTGTCCCCGGTGCTTCCTTTTGGGTTCCACCTCCTAGATCCCAGTCTC 335
Query 291 ATGGGATCGCTAAGCTCGTTGAGAAGCTGGCCAATCCCATCTCTGATGAAGAATCTATTT 350
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 336 ATGGGATCGCTAAGCTCGTTGAGAAGCTGGCCAATCCGATCTCTGATGAAGAATCTATTT 395
Query 351 CAATCTCATCGGTTCGAGGATGGCCTTGCTCTGATTACTTCATCAAAGGTGTACAGCCTC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 396 CAATCTCATCGGTTCGAGGATGGCCTTGCTCTGATTACTTCATCAAAGGTGTAAAGCCTC 455
Query 411 AGTCAGTTGAGACGGAGTTGACTTCAAATACTGCATCTCACTCCGACGACGAGGAATAAA 470
| ||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||
Sbjct 456 AATCAGTTGAGACGGAGATGACTTCAAATACTGCATATCACTCCGAGGACGAGGAATAAA 515
Query 471 CCCCAAAACTCTGTCAGGGTTCTTGCTCTCCAAGATCTGTAGATCTATGAACAC-AATTC 529
||||||||||| ||||||| ||||||||| |||||| ||||||| ||||||||| ||| |
Sbjct 516 CCCCAAAACTC-GTCAGGGCTCTTGCTCTTCAAGATTTGTAGATTTATGAACACGAAT-C 573
Query 530 ATCGAGGATTC-ATATCACCAAGAGCAACTGCAAAGACGTGACATGGTTTAGACTTTTAG 588
| ||| ||||| | ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 574 AACGAAGATTCGA-ATCACCAAGAGCAGCTGCAAAGAC---A--TGGTTTAGACTTTTAG 627
Query 589 ATAGGGTAGAGTAA-GCAAACCTTTTACAGACTGATCCGATCCTATCCTATCCAGTCTTA 647
||| |||||||||| |||||||||||||||||||||| |||||||||| | ||||||
Sbjct 628 ATAAGGTAGAGTAAAGCAAACCTTTTACAGACTGATCAGATCCTATCC-A----GTCTTA 682
Query 648 GTGAAATTAAATAAG-AAAAGGTGCTGTGGCTTTGCCCTCTGTTTTCTTGTAATCTTCCT 706
||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 683 GTGAAATTAAATAAGGAAAAGGTGCTGTTGCTTTACCCTCTGTTTTCTTGTAATCTCCCT 742
Query 707 TATAACAGTTTGTTGAATCGTGTGTATATATATATCCGCATAAGCTCGCAGATTCAGTTC 766
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 743 TATAACAGTTTGTTGAATCGTGTGTATATATATTTCCGCATAAGCTCGCAGATTCGGTTC 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5