BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477055
Length=2370
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78900.1 | Symbols: VHA-A | vacuolar ATP synthase subunit A ... 3890 0.0
> AT1G78900.1 | Symbols: VHA-A | vacuolar ATP synthase subunit
A | chr1:29660184-29664951 FORWARD LENGTH=2376
Length=2376
Score = 3890 bits (2106), Expect = 0.0
Identities = 2291/2379 (96%), Gaps = 18/2379 (1%)
Strand=Plus/Plus
Query 1 ATCTACGTGCATCCA-C-CTCTC-TCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACT 57
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4 ATCTACGTGCATCCACCTCTCTCTTCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACT 63
Query 58 GGAGGTGAATTTTAATTTCTTTGGCCGATCGGATTTGAGTTTTTGAATCTCTGATTGCTG 117
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGAGGTGAATTTTGATTTTTTTGGCCGATCGGATTTGAGTTTTTGAATCTCTGATTGCTG 123
Query 118 AGAAAATGCCGGCGTTTTACGGAGGAAAGCTTACGACCTTCGAGGACGATGAGAAGGAGA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGAAAATGCCGGCGTTTTACGGAGGAAAGCTTACGACCTTCGAGGACGATGAGAAGGAGA 183
Query 178 GCGAGTATGGTTACGTTCGTAAGGTTTCAGGGCCTGTTGTTGTCGCCGATGGTATGGCCG 237
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 184 GCGAGTATGGTTACGTTCGTAAGGTTTCAGGTCCTGTTGTTGTTGCCGATGGTATGGCCG 243
Query 238 GTGCTGCTATGTATGAGTTAGTGCGTGTTGGGCATGATAATTTGATTGGTGAAATCATCC 297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 GTGCTGCTATGTATGAGTTAGTGCGTGTTGGTCATGATAATTTGATTGGTGAAATCATCC 303
Query 298 GTCTTGAAGGAGATTCTGCCACCATCCAAGTTTACGAGGAAACAGCTGGATTGACAGTTA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTCTTGAAGGAGATTCTGCCACCATCCAAGTTTACGAGGAAACAGCTGGATTGACAGTTA 363
Query 358 ATGATCCCGTTCTTCGAACACACAAGCCACTTTCTGTGGAGCTCGGGCCAGGAATACTGG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 364 ATGATCCCGTTCTTCGAACACACAAGCCACTTTCTGTGGAGCTCGGGCCAGGAATATTGG 423
Query 418 GAAATATCTTCGATGGAATTCAGAGGCCTTTGAAGACAATTGCAAGAATATCCGGTGATG 477
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 424 GAAATATCTTTGATGGAATTCAGAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATG 483
Query 478 TGTACATCCCTCGTGGTGTGTCTGTCCCAGCTCTTGACAAAGATTGTCCTTGGGAGTTCC 537
||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 484 TGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCC 543
Query 538 AGCCCAATAAATTTGTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTACTGTCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGCCCAATAAATTTGTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTACTGTCT 603
Query 598 TTGAGAACACTTTGATGAATCACCAT-GTTGCCCTTCCTCCTGATGCCATGGGGAAGATC 656
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 604 TTGAGAACACTTTGATGAATCACC-TCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATC 662
Query 657 ACTTACATTGCTCCAGCTGGTCAATATTCCCTTAAGGATACAGTGATAGAGCTTGAGTTC 716
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 663 ACTTACATTGCTCCAGCTGGTCAATATTCGCTTAAGGATACCGTGATAGAGCTTGAATTC 722
Query 717 CAGGGTATCAAGAAATCTTACACCATGCTTCAGAGCTGGCCTGTACGTACGCCTAGGCCA 776
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGGGGATCAAGAAATCTTACACCATGCTTCAGAGCTGGCCTGTACGTACGCCTAGGCCA 782
Query 777 GTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGCGTGTCCTTGATGCC 836
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 783 GTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGCGTGTTCTTGATGCC 842
Query 837 CTTTTCCCTTCGGTTCTTGGTGGAACCTGTGCCATTCCTGGTGCTTTTGGCTGTGGGAAA 896
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTTTTCCCTTCTGTTCTTGGTGGAACCTGTGCCATTCCTGGTGCTTTTGGCTGTGGGAAA 902
Query 897 ACTGTTATCAGTCAGGCACTTTCCAAGTACTCCAACTCCGATGCTGTTGTGTATGTTGGT 956
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 903 ACTGTTATCAGTCAGGCACTTTCCAAGTACTCCAACTCTGATGCTGTTGTGTATGTTGGT 962
Query 957 TGTGGAGAGAGAGGAAATGAAATGGCTGAGGTTCTTATGGACTTCCCACAATTGACAATG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGTGGAGAGAGAGGAAATGAAATGGCTGAGGTTCTTATGGACTTCCCACAATTGACAATG 1022
Query 1017 ACATTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACTACACTTGTTGCCAACACC 1076
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1023 ACGTTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACCACACTTGTTGCTAACACC 1082
Query 1077 TCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGGAATCACAATCGCTGAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGGAATCACAATCGCTGAA 1142
Query 1137 TATTTTAGAGATATGGGATACAATGTTAGTATGATGGCAGACTCAACTTCCCGTTGGGCA 1196
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TATTTTAGAGATATGGGCTACAATGTTAGTATGATGGCAGACTCAACTTCCCGTTGGGCA 1202
Query 1197 GAAGCATTAAGAGAAATTTCAGGACGGCTGGCTGAAATGCCTGCCGACAGTGGGTATCCC 1256
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1203 GAAGCATTAAGAGAAATTTCAGGACGGCTGGCTGAAATGCCTGCTGACAGTGGATATCCA 1262
Query 1257 GCCTATCTAGCAGCACGTTTAGCATCTTTCTATGAACGTGCTGGTAAAGTAAAATGTCTC 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GCCTATCTAGCAGCACGTTTAGCATCTTTCTATGAACGTGCTGGTAAAGTAAAATGTCTT 1322
Query 1317 GGTGGACCAGAACGTGATGGAAGTGTCACAATTGTTGGTGCTGTTTCACCTCCTGGAGGA 1376
||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1323 GGTGGACCAGAACGTAACGGAAGTGTTACAATTGTTGGTGCAGTTTCGCCTCCTGGAGGA 1382
Query 1377 GACTTTTCAGATCCTGTGACTTCGGCAACCCTTAGTATTGTGCAGGTCTTCTGGGGTTTG 1436
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1383 GACTTTTCAGATCCTGTGACTTCAGCAACCCTTAGTATTGTGCAGGTCTTCTGGGGTTTG 1442
Query 1437 GACAAAAAGCTTGCCCAGAGAAAACATTTTCCTTCTGTTAATTGGTTGATTTCCTACTCT 1496
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1443 GACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCA 1502
Query 1497 AAGTATTCAACGGC-CTTGGAAACTTTCTATGAAAAGTTTGATCCAGATTTCATCACCAT 1555
|||||||||||||| || |||| |||||||||| ||||| |||||||||||||||| |||
Sbjct 1503 AAGTATTCAACGGCACT-GGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACAT 1561
Query 1556 CAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGCT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGCT 1621
Query 1616 TGTAGGAAAAGATGCGCTAGCAGAAGGTGACAAAATCACCTTGGAAACAGCTAAGCTATT 1675
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1622 TGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATT 1681
Query 1676 GAGGGAAGACTACCTTGCTCAAAACGCGTTTACACCATATGACAAATACTGCCCTTTCTA 1735
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1682 GAGGGAAGATTACCTTGCTCAAAACGCGTTTACACCATATGACAAATTCTGTCCTTTCTA 1741
Query 1736 CAAGTCGGTCTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGGCGGT 1795
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 CAAGTCCGTGTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGGCGGT 1801
Query 1796 TGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACTTACACTCTCATCAAGCATCGCTT 1855
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1802 TGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACCTACACTCTTATCAAGCATCGCTT 1861
Query 1856 GGGAGATCTTTTCTACCGTTTAGTGTCTCAGAAGTTCGAAGACCCAGCAGAAGGTGAGGA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1862 AGGAGATCTTTTCTACCGTTTAGTGTCTCAGAAGTTCGAAGACCCAGCAGAAGGGGAGGA 1921
Query 1916 TACACTGGTGGCAAAATTTAAGAAATTGTATGACGATCTCACTGCTGGATTCCGTGCCTT 1975
||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 1922 TACACTGGTGGAAAAATTCAAGAAATTGTACGACGATCTCAATGCTGGATTCCGTGCTTT 1981
Query 1976 GGAGGATGAAACTCGGTAAGCTGTCG-GTCTCCACCGCAAGTCTAAAAA-TCCACAGAAT 2033
||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 1982 GGAAGATGAAACTCGGTAAGCTGTCGAGTCTCCACCGCAAGTAAAAAAAATCCACAGAAT 2041
Query 2034 TGGGTTGTTTTTGGAGAAAGAGGGTTTCATTCATGTTCTCTTTCTTGTGTTTTTGAACCA 2093
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2042 TGGGTTGTTTTTGGAGAAAGAGGGTTTCATTCATGGTCTCTTTCTTGTGTTTTTGAACCA 2101
Query 2094 ACAACTATCATAGTGGTCGGTATTTTATTTATCGGTTTGTTTGATCGATTGAGTTATAGC 2153
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 2102 ACAACTATCATAGTGGTCGGTATTTTATTTATCGGTTTGGTCGATCGATTGAGTTTTAGC 2161
Query 2154 TCTGTGAGCGTCATGATTCTCCGGCTGTGCTGTGCTGTGTAATATGTTTGATTCGTTGTT 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2162 TCTGTGAGCGTCATGATTCTCCGGCTGTGCTGTGCTGTGTAATATGTTTGATTCGTTGTT 2221
Query 2214 TTTATGTTTTTTATTTCGATGGTAATAAGGTACAGCCAATGTGGGACATATATTTGATTT 2273
|| |||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 2222 TTCATGTTTTT-ATTTCGGTGGTAATAAGGTACAGCCAATGTGAGTCATATATTTGATTT 2280
Query 2274 GATGTACCCTATCATCAATTCAATAAGTTAATTATATAATGTCCAAAC-C-TATTGGGGA 2331
|||||||||| | ||||||||||||||||||| | || |||||||| | |||||||||
Sbjct 2281 GATGTACCCT--C-TCAATTCAATAAGTTAATT-T-TA-TGTCCAAAAACATATTGGGGA 2334
Query 2332 TACAGTTATTTTTCTCATAATAAATACCATCATTTTGTA 2370
||| |||||||||||||||||||||||||||||||||||
Sbjct 2335 TACCGTTATTTTTCTCATAATAAATACCATCATTTTGTA 2373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117670077480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5