BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477057
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78910.1 | Symbols: | Pseudouridine synthase family protein... 2414 0.0
> AT1G78910.1 | Symbols: | Pseudouridine synthase family protein
| chr1:29665218-29667656 FORWARD LENGTH=1587
Length=1587
Score = 2414 bits (1307), Expect = 0.0
Identities = 1427/1485 (96%), Gaps = 7/1485 (0%)
Strand=Plus/Plus
Query 1 CCTAGACACAGAGTCCTCCAGTCTTCTGATAAACACCCCCATGTGGAAGGCCAAGACATG 60
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 14 CCTAGACACAGAGTCCTCCGGTCTTCTGAT-AA-ACCCCCATGTGGAAGGCCAAGACATG 71
Query 61 CTTCCGTCAGATTTTCCTGGGCGTAGTAACT-CGGCGGTACTCGAGAGTCGCTCCACCGC 119
|||||||||||||| | || |||| ||| | ||||||||||||||||||||||| ||||
Sbjct 72 CTTCCGTCAGATTTACTTGACCGTACTAA-TACGGCGGTACTCGAGAGTCGCTCCGCCGC 130
Query 120 CATCGTCGGTGCTCCGCGTGACAAACAACATAGCACACCTGGGACCACCGAAGCAAGGAC 179
| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 131 CGTCTTCGGTGATCCGCGTGACAAACAACGTAGCACACCTGGGACCACCGAAGCAAGGAC 190
Query 180 CATTGCCACGTCAGCTGATATCCCTGCCGCCATTCCCCGGTTATCCGTTACCTGGCAAAA 239
|| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 191 CACTGCCACGTCAGCTGATATCCCTGCCGCCATTTCCCGGTCATCCATTACCTGGCAAAA 250
Query 240 ACGCCGGAGTTGACGGAGACGAGGGAGATA---GCGGCCACGTCACAGCCATAAGCTGGG 296
||||||||| |||||| ||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 251 ACGCCGGAGCTGACGGCGACGATGGAGATAGCGGCGGCCACGTCACAGCTATAAGCTGGG 310
Query 297 TCAAGTACTATTTCGAAGAAATCCATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 356
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 311 TCAAGTACTATTTTGAAGAAATCTATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 370
Query 357 TTGTTCAGATGGAGTTTCGAGGTCGTATGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 371 TTGTTCAGATGGAGTTTCGAGGTCGTAGGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 430
Query 417 TTCCTATGAGAAAGATTAAGCATAACGAAGTAATGGAAATAGGAGATAAAATCTGGTTGC 476
|||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||
Sbjct 431 TTCCTATGAGAAAGATTAAGCATAACGAGGTGATGCAAATAGGAGACAAAATCTGGTTGC 490
Query 477 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACTATACCAAGTGGAACCT 536
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 491 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACCATACCAAGTGGAACCT 550
Query 537 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 610
Query 597 CTATTATCGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CTATTATAGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 670
Query 657 ACAGCATTGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAAAGATGAAGGTCCTAGAT 716
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 671 ATAGCATGGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAACGATGAAGGTCCTAGAT 730
Query 717 TGGTACATCGTCTTGATAGGGAAACTAGCGGCCTCTTAGTAATGGGTCGATCCAAAGAAA 776
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 731 TGGTACATCGTCTTGATAGGGAAACTAGTGGCCTCTTAGTAATGGGTCGAACCAAAGAAA 790
Query 777 GTATAGATTATCTTCACTCAGTGTTCAGTGATTACAAGGGGAGAAACTCAAGCTGTAAGG 836
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 791 GTATAGATTATCTTCACTCAGTGTTCAGTGACTACAAGGGGAGAAACTCAAGCTGTAAGG 850
Query 837 CTTGGAACAAAGCGTGTGAAGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 896
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CTTGGAACAAAGCGTGTGAGGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 910
Query 897 CAAAGGAAAAAGAAGGACGAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 956
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CAAAGGAAAAAGAAGGACTAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 970
Query 957 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGAAGCAATAA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 971 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGATGCAATAA 1030
Query 1017 CAGAGTATAGAGTGTTAGGACCTATGATCAACGGGTGTTCGTGGTTAGAACTTCGTCCTA 1076
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1031 CAGAGTATAAAGTGTTAGGACCTAAGATCAACGGGTGTTCGTGGGTAGAACTTCGTCCTA 1090
Query 1077 TTACTAGCAGAAAGCATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1136
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TTACTAGCAGAAAACATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1150
Query 1137 TGGGGGATTATAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1196
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TAGGGGATTACAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1210
Query 1197 ATATCGAACCAACAACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1256
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 ATATCGAACCAACTACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1270
Query 1257 AAAAGGGAAGCGTTTTGTCAAAAGTTCCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1271 AAAAGGGAAGCGTTTTGTCAAAAGTACCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1330
Query 1317 TTCCAAACATTGCCAAGTTTCTCCATGTCTTGAACCAACAGGAAACAGAGCCGCTTCACA 1376
||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 1331 TTCCAAACATTGCCAAGTTCCTACATGTCATGAACCAACAGGAAACAGAGCCGCTTCACA 1390
Query 1377 CAGGAATCATTGATAAACCAGATCTCTTGCGGTTTGTAGCTTCAATGCCTAGCCATATGA 1436
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1391 CAGGAATCATTGATAAACCGGATCTCTTGCGGTTTGTAGCTTCAATGCCCAGCCATATGA 1450
Query 1437 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCCCTTTT 1481
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1451 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCTCTTTT 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5