BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477061
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78930.1 | Symbols: | Mitochondrial transcription terminati... 2966 0.0
> AT1G78930.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:29678097-29680757 REVERSE
LENGTH=2073
Length=2073
Score = 2966 bits (1606), Expect = 0.0
Identities = 1927/2074 (93%), Gaps = 54/2074 (3%)
Strand=Plus/Plus
Query 1 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGTAGAAGCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 14 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGCAGAAGCAAAG 73
Query 61 TATCGACCTTTGTCTTCTTCTCCGTC--G--TGTTTATGGAGCTTTTACATACCTCCTGC 116
|| |||||||||||||||||||| || | |||||||||||||||||||||| ||||||
Sbjct 74 TAGCGACCTTTGTCTTCTTCTCCATCGTGTTTGTTTATGGAGCTTTTACATACGTCCTGC 133
Query 117 TATTTCGAAACCCTAACCTTGATTTCTCCTCCTCTACAATCTTGTAAATTTGGTTCCAAC 176
|||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| |
Sbjct 134 AATTTCGAAACCCTAACCTTGATTTCTCCTCCTTTAAAATCCTGTAACTTTAGTTCCAGC 193
Query 177 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTGCTCT-CGGCTTACCACCACAGTGGCCG 235
||||||||||||||||||||||||||||||||| | | | |||| |||| ||||||||
Sbjct 194 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTG-TTTCCAGCTT---ACCATAGTGGCCG 249
Query 236 ATTCGCTGTTTCTGCCTCGTTTCAGCACGGAGATACGAATTTGAGCTCTAGTTCTTCGCA 295
|| ||||||| |||||||| |||||||||||| ||||||| ||||||| |||||||||
Sbjct 250 CGTCACTGTTTCCGCCTCGTTACAGCACGGAGATTCGAATTTTAGCTCTAATTCTTCGCA 309
Query 296 GACAAATCACGAGGACGCGCAGAATTCAATTGCTGAGTTTCTCCGACGAGACATTGGTCT 355
||||||| | |||| ||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 310 GACAAAT--C-AGGAAGCGCAGAATTCAATTGCTGGGTTTCTCCGACGAGACACTGGACT 366
Query 356 CTCAGAGGCCGATTCAGATTTCATTTCTGAAAATTGTCC-AAAGTACACGAGAATGATTG 414
|||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||| |
Sbjct 367 CTCAGAGGCCGATTCAGATTTCATTTCTTCAAATTGTCCTAAA-TACACGCGAATGATCG 425
Query 415 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGTGG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 426 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGAGA 485
Query 475 GAATT--GG-GGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 531
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GAGTTGAGGAGGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 545
Query 532 ATGGTGGGAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTCTGTCTTCTGCTATGTATT 591
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 546 ATGGTGGCAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTTTGTCTTCTGCTATGTATT 605
Query 592 TGGCTCATTACGTCTCCTCTGAATCGCTTCCCATACTTCTCGATAAGGTTAAGTACCTCA 651
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 606 TGGCTCATTACGTCTCCTCTGAATCGCTTCCGATACTTCTCGATAAGGTTAAGTACCTCA 665
Query 652 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTTGTTGGAAAGTATGCACGACGAA 711
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 666 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTGGTTGGAAAGTATGCAAGACGAA 725
Query 712 TGATGCTCTACTTATCCATTCCTATTGATGAAGATGTTCAGCAAACTCTTTCCTTTTTCG 771
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 726 TGATGCTCTACTTATCCATTCCTATCGATGAAGATGTGCAGCAAACTCTTTCCTTTTTCG 785
Query 772 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGGTCTGTAGATGCATCATTTA 831
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGCTCTGTAGATGCATCATTTA 845
Query 832 GATTTTTAATCGAGTCATTCCCTCAGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 891
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 846 GATTTTTACTCGAGTCATTCCCTCGGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 905
Query 892 CTATGGTAGAGTTTCTTGAAAGCATTGGTATTCCTAAATATTGCTTGGGAAAGCTACTTC 951
||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 906 CTATGGTCGAGTTTCTTGAAAGCATTGGTATTCCGAAATATTGCTTGGGAAAGGTACTTC 965
Query 952 TTTTGTACCCTCCTATCTTGCTAGGCAAAACTGAGGAGATCAAAAGAAGGGTAGCCGCAG 1011
||||||||||||| ||| |||| || |||||||||||||||||| ||||||||||| |||
Sbjct 966 TTTTGTACCCTCCCATCATGCTCGGAAAAACTGAGGAGATCAAACGAAGGGTAGCCACAG 1025
Query 1012 CTCTGGAGAAGCTTAGTGTAGTGGACAAGGATTCGGGAAAAGTGTTGCTGAAGTATCCTT 1071
|| |||||||| | ||||||||| |||||||||| |||||| |||||||||||||||| |
Sbjct 1026 CTATGGAGAAGGTAAGTGTAGTGAACAAGGATTCTGGAAAATTGTTGCTGAAGTATCCGT 1085
Query 1072 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGTCTCATATTTTTACAGTG 1131
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1086 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGGCTCATTTTTTTACAGTG 1145
Query 1132 AATCGGTGCTCAAAATGGATATTGACCACGCAATTAAGAGATGGCCTTTGCTTCTCGGTT 1191
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1146 AATCGGTGCTCAAAATGGATATTGACCACGCCATTAGGAGATGGCCTTTGCTTCTCGGTT 1205
Query 1192 GCTCAGCGAACAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1251
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GCTCAGCCAGCAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1265
Query 1252 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1325
Query 1312 TTCTGAAGGTTGTTTGCTTTTTGGAAGATTTGGGATTTCAAAAGGAAATCGTGGGTCAAA 1371
|||| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 1326 TTCTTAAGGTTGTTTGCTTTTTGGAAGATTTGGGGTTTCAAAAAGAAATTGTAGGTCAAA 1385
Query 1372 TACTTTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGACAAGACCCTGCAGAAAAAGC 1431
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1386 TACTGTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGAGAAAACCCTGCAGAAAAAGC 1445
Query 1432 TCATCTTTCTCACACGTTTTGGTGTTTCCACTAGC-CATTTCCCCCGAATCATAAAGAAA 1490
||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 1446 TCATCTTTCTCACTCGTTTTGGTGTTTCCACTA-CACATTTTCCCCGAATCATAAAGAAA 1504
Query 1491 TACCCGGAATTTCTTC-TATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1549
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TACCCTGAATTTCT-CATATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1563
Query 1550 AATGGAGATTGGGATATCGGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1609
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AATGGAGATTGGGATATCAGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1623
Query 1610 CTTGGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1669
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CTTAGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1683
Query 1670 GGAGAAGCCGCTTAGAGAGGTAATAGAATACCCGAGGTACTTCAGTTACTCGCTGGAGAA 1729
|||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1684 GGAGAAGCCGGTAAGAGAGGTAATAGAATACCCAAGGTACTTCAGTTACTCGCTAGAGAA 1743
Query 1730 AAGAATAAAACCGCGGTTTTGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1789
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 AAGGATAAAACCGCGGTTTAGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1803
Query 1790 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1863
Query 1850 AACTCACAGTGAAACCTC-T--T-A----GT---T-AA---GTTTCTTTGAGAAAATCAC 1894
|||||||||||||| ||| | | | || | || ||||||| |||||||||||
Sbjct 1864 AACTCACAGTGAAATCTCGTAGTTATATTGTAGGTGAAAAAGTTTCTTAGAGAAAATCAC 1923
Query 1895 ACTATGTAATGAGATTGGTGATATCTCTGAAGACTGAAGCTTCTTCAGTTTTGTCTGTTT 1954
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 1924 ACTATGTAATGAGATTGGTGATATCTCTGAAG-CT-----T-CTTCAGTTTTGTCTGTTT 1976
Query 1955 GCGTTGTTCATAG----G-TAGTGTATGTACTTACTGTTCTTTTGTATACAAATTCCTAA 2009
|| ||||||||| | |||||||||||||| | || ||| ||||||||||||||||
Sbjct 1977 GCATTGTTCATATAACCGCTAGTGTATGTACTTCCAGTG-TTT-GTATACAAATTCCTAA 2034
Query 2010 CTTTATTTTACCaaaaaaaa-TCAGCTGATGTGT 2042
||| || ||||||||||| || ||||||||||
Sbjct 2035 CTTC-TT--ACCAAAAAAAAATCGGCTGATGTGT 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5