BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477061 Length=2042 Score E Sequences producing significant alignments: (Bits) Value AT1G78930.1 | Symbols: | Mitochondrial transcription terminati... 2966 0.0 > AT1G78930.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29678097-29680757 REVERSE LENGTH=2073 Length=2073 Score = 2966 bits (1606), Expect = 0.0 Identities = 1927/2074 (93%), Gaps = 54/2074 (3%) Strand=Plus/Plus Query 1 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGTAGAAGCAAAG 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 14 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGCAGAAGCAAAG 73 Query 61 TATCGACCTTTGTCTTCTTCTCCGTC--G--TGTTTATGGAGCTTTTACATACCTCCTGC 116 || |||||||||||||||||||| || | |||||||||||||||||||||| |||||| Sbjct 74 TAGCGACCTTTGTCTTCTTCTCCATCGTGTTTGTTTATGGAGCTTTTACATACGTCCTGC 133 Query 117 TATTTCGAAACCCTAACCTTGATTTCTCCTCCTCTACAATCTTGTAAATTTGGTTCCAAC 176 |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| | Sbjct 134 AATTTCGAAACCCTAACCTTGATTTCTCCTCCTTTAAAATCCTGTAACTTTAGTTCCAGC 193 Query 177 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTGCTCT-CGGCTTACCACCACAGTGGCCG 235 ||||||||||||||||||||||||||||||||| | | | |||| |||| |||||||| Sbjct 194 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTG-TTTCCAGCTT---ACCATAGTGGCCG 249 Query 236 ATTCGCTGTTTCTGCCTCGTTTCAGCACGGAGATACGAATTTGAGCTCTAGTTCTTCGCA 295 || ||||||| |||||||| |||||||||||| ||||||| ||||||| ||||||||| Sbjct 250 CGTCACTGTTTCCGCCTCGTTACAGCACGGAGATTCGAATTTTAGCTCTAATTCTTCGCA 309 Query 296 GACAAATCACGAGGACGCGCAGAATTCAATTGCTGAGTTTCTCCGACGAGACATTGGTCT 355 ||||||| | |||| ||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 310 GACAAAT--C-AGGAAGCGCAGAATTCAATTGCTGGGTTTCTCCGACGAGACACTGGACT 366 Query 356 CTCAGAGGCCGATTCAGATTTCATTTCTGAAAATTGTCC-AAAGTACACGAGAATGATTG 414 |||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||| | Sbjct 367 CTCAGAGGCCGATTCAGATTTCATTTCTTCAAATTGTCCTAAA-TACACGCGAATGATCG 425 Query 415 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGTGG 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 426 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGAGA 485 Query 475 GAATT--GG-GGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 531 || || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GAGTTGAGGAGGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 545 Query 532 ATGGTGGGAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTCTGTCTTCTGCTATGTATT 591 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 546 ATGGTGGCAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTTTGTCTTCTGCTATGTATT 605 Query 592 TGGCTCATTACGTCTCCTCTGAATCGCTTCCCATACTTCTCGATAAGGTTAAGTACCTCA 651 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 606 TGGCTCATTACGTCTCCTCTGAATCGCTTCCGATACTTCTCGATAAGGTTAAGTACCTCA 665 Query 652 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTTGTTGGAAAGTATGCACGACGAA 711 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 666 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTGGTTGGAAAGTATGCAAGACGAA 725 Query 712 TGATGCTCTACTTATCCATTCCTATTGATGAAGATGTTCAGCAAACTCTTTCCTTTTTCG 771 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 726 TGATGCTCTACTTATCCATTCCTATCGATGAAGATGTGCAGCAAACTCTTTCCTTTTTCG 785 Query 772 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGGTCTGTAGATGCATCATTTA 831 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 786 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGCTCTGTAGATGCATCATTTA 845 Query 832 GATTTTTAATCGAGTCATTCCCTCAGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 891 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 846 GATTTTTACTCGAGTCATTCCCTCGGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 905 Query 892 CTATGGTAGAGTTTCTTGAAAGCATTGGTATTCCTAAATATTGCTTGGGAAAGCTACTTC 951 ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 906 CTATGGTCGAGTTTCTTGAAAGCATTGGTATTCCGAAATATTGCTTGGGAAAGGTACTTC 965 Query 952 TTTTGTACCCTCCTATCTTGCTAGGCAAAACTGAGGAGATCAAAAGAAGGGTAGCCGCAG 1011 ||||||||||||| ||| |||| || |||||||||||||||||| ||||||||||| ||| Sbjct 966 TTTTGTACCCTCCCATCATGCTCGGAAAAACTGAGGAGATCAAACGAAGGGTAGCCACAG 1025 Query 1012 CTCTGGAGAAGCTTAGTGTAGTGGACAAGGATTCGGGAAAAGTGTTGCTGAAGTATCCTT 1071 || |||||||| | ||||||||| |||||||||| |||||| |||||||||||||||| | Sbjct 1026 CTATGGAGAAGGTAAGTGTAGTGAACAAGGATTCTGGAAAATTGTTGCTGAAGTATCCGT 1085 Query 1072 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGTCTCATATTTTTACAGTG 1131 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1086 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGGCTCATTTTTTTACAGTG 1145 Query 1132 AATCGGTGCTCAAAATGGATATTGACCACGCAATTAAGAGATGGCCTTTGCTTCTCGGTT 1191 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1146 AATCGGTGCTCAAAATGGATATTGACCACGCCATTAGGAGATGGCCTTTGCTTCTCGGTT 1205 Query 1192 GCTCAGCGAACAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1251 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 GCTCAGCCAGCAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1265 Query 1252 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1325 Query 1312 TTCTGAAGGTTGTTTGCTTTTTGGAAGATTTGGGATTTCAAAAGGAAATCGTGGGTCAAA 1371 |||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 1326 TTCTTAAGGTTGTTTGCTTTTTGGAAGATTTGGGGTTTCAAAAAGAAATTGTAGGTCAAA 1385 Query 1372 TACTTTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGACAAGACCCTGCAGAAAAAGC 1431 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1386 TACTGTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGAGAAAACCCTGCAGAAAAAGC 1445 Query 1432 TCATCTTTCTCACACGTTTTGGTGTTTCCACTAGC-CATTTCCCCCGAATCATAAAGAAA 1490 ||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 1446 TCATCTTTCTCACTCGTTTTGGTGTTTCCACTA-CACATTTTCCCCGAATCATAAAGAAA 1504 Query 1491 TACCCGGAATTTCTTC-TATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1549 ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505 TACCCTGAATTTCT-CATATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1563 Query 1550 AATGGAGATTGGGATATCGGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1609 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 AATGGAGATTGGGATATCAGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1623 Query 1610 CTTGGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1669 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 CTTAGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1683 Query 1670 GGAGAAGCCGCTTAGAGAGGTAATAGAATACCCGAGGTACTTCAGTTACTCGCTGGAGAA 1729 |||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1684 GGAGAAGCCGGTAAGAGAGGTAATAGAATACCCAAGGTACTTCAGTTACTCGCTAGAGAA 1743 Query 1730 AAGAATAAAACCGCGGTTTTGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1789 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1744 AAGGATAAAACCGCGGTTTAGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1803 Query 1790 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1804 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1863 Query 1850 AACTCACAGTGAAACCTC-T--T-A----GT---T-AA---GTTTCTTTGAGAAAATCAC 1894 |||||||||||||| ||| | | | || | || ||||||| ||||||||||| Sbjct 1864 AACTCACAGTGAAATCTCGTAGTTATATTGTAGGTGAAAAAGTTTCTTAGAGAAAATCAC 1923 Query 1895 ACTATGTAATGAGATTGGTGATATCTCTGAAGACTGAAGCTTCTTCAGTTTTGTCTGTTT 1954 |||||||||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct 1924 ACTATGTAATGAGATTGGTGATATCTCTGAAG-CT-----T-CTTCAGTTTTGTCTGTTT 1976 Query 1955 GCGTTGTTCATAG----G-TAGTGTATGTACTTACTGTTCTTTTGTATACAAATTCCTAA 2009 || ||||||||| | |||||||||||||| | || ||| |||||||||||||||| Sbjct 1977 GCATTGTTCATATAACCGCTAGTGTATGTACTTCCAGTG-TTT-GTATACAAATTCCTAA 2034 Query 2010 CTTTATTTTACCaaaaaaaa-TCAGCTGATGTGT 2042 ||| || ||||||||||| || |||||||||| Sbjct 2035 CTTC-TT--ACCAAAAAAAAATCGGCTGATGTGT 2065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101204298720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5