BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477067 Length=2371 Score E Sequences producing significant alignments: (Bits) Value AT1G78980.1 | Symbols: SRF5 | STRUBBELIG-receptor family 5 | ch... 3530 0.0 AT1G53730.2 | Symbols: SRF6 | STRUBBELIG-receptor family 6 | ch... 100 5e-20 > AT1G78980.1 | Symbols: SRF5 | STRUBBELIG-receptor family 5 | chr1:29707687-29711421 REVERSE LENGTH=2491 Length=2491 Score = 3530 bits (1911), Expect = 0.0 Identities = 2163/2283 (95%), Gaps = 24/2283 (1%) Strand=Plus/Plus Query 1 CCAAACCTCAAAAATATCTCTATCCCTAAAT----T--CAAT--CACATTCTCTCAAACC 52 ||||||||||| ||| ||||||||||||||| | |||| |||||| ||||||||| Sbjct 14 CCAAACCTCAACAATGTCTCTATCCCTAAATCCAATCACAATGGCACATTATCTCAAACC 73 Query 53 CGCGTCGTCTTGTCCGTGAAGCAAACCAGAAAGCATAACCCTAACCCTGAAAACCCTAAA 112 | |||||||||||||||||||||||||| |||||| ||| ||||| || |||||| | Sbjct 74 CTCGTCGTCTTGTCCGTGAAGCAAACCAAAAAGCACAACACTAACTTTGGAAACCC---A 130 Query 113 TCCCTTTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTAAGCCTCT-TGAT 171 ||||||||||||||||||||||||||||||||||||||||||| |||| | |||| Sbjct 131 -----TTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTACGCCT-TGTGAT 184 Query 172 CGTCTCTCTGGCTATTATTGTCACTTTAGTTCAAGCAAAAACCGATAACCAAGAAGTCTC 231 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 185 CGTCTCTCTGGCTATTACTGTCACTTTACTTCAAGCAAAAACCGATAACCAAGAAGTCTC 244 Query 232 CGGGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCCAAACTCAAAGGCTGGAAACC 291 || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 245 CGCGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCGAAACTCAAAGGTTGGAAAGC 304 Query 292 TAACGGAGGTGATCCCTGCGACGGTTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 351 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 305 TAACGGAGGTGATCCCTGCGAAGATTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 364 Query 352 CACCGAATTACAGTTATCCGGCTTTGAGCTAAGTGGATCTCTCGGTTATCTACTAAGCAA 411 ||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 365 CACTGAATTACAGTTATCAGGCTTTGAGCTAGGTGGATCTCGCGGTTATCTACTAAGCAA 424 Query 412 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 484 Query 472 TCAACTCCCACCCAACATTGTCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 531 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 485 TCAACTCCCACCCAACATTGCCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 544 Query 532 GCCCTACTCGTTATCTCAAATGAAAAGTCTCCAAAGCATTAATCTTGGACAAAACAAGCT 591 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 545 GCCCTACTCGTTATCTCAAATGAAAAATCTCCAAAGCATTAATCTTGGACAAAACAAGCT 604 Query 592 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCAAAACTCGTAACTCTGGACTTATC 651 |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 605 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCCAAACTCGAAACTCTGGACTTTTC 664 Query 652 GTTGAATCAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 711 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 GTTGAATAAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 724 Query 712 ACTACACTTGCAGGAAAATCGATTCACAGGCGACATAAACGTTCTGAGGAACCTTGCCAT 771 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 725 ACTACACTTGCAGGATAATCGATTCACAGGCGACATAAACGTTCTCAGGAACCTTGCCAT 784 Query 772 TGATGACTTGAACGTTGAAGACAACCAGTTTGAAGGATGGATCCCTAATGAGCTTAAGGA 831 |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 785 CGATGACTTGAACGTCGAAGACAACCAGTTTGAAGGATGGATACCTAATGAGCTTAAGGA 844 Query 832 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCACCACCACCACC 891 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 845 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCTCCACCACCACC 904 Query 892 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCTAAAGATGGAGGAGGTGTAACCGC 951 |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 905 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCGAAAGACGGAGGAGGTATAACCGC 964 Query 952 CGGGAAC-GGAATGATGATCGCTGGAGCATGTTTAGGAGTTCTTGTGTTGATCGCTGTTT 1010 | ||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 965 C-GGAACTGGAATGGTGATCGCTGGAGCATGTTTAGGCGTTCTTGTGTTGATCATTGTTT 1023 Query 1011 TAATTGCGCTCGTGTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGACA 1070 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1024 TAATTGCGCTCGTTTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGATA 1083 Query 1071 ACAGTCATCACACTCCAAAGTTCAAATCTATTACCTCGCATGGATCAGCGCAAGAGCTTC 1130 ||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| Sbjct 1084 ACAGTCATCACACCCCAAAGTTCAAATCTCTCACCTCGCATGGATCTGCGCAAGAGCTTC 1143 Query 1131 GTGTCGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGATGATGAAAATA 1190 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1144 GTGTTGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGGTGATGAAAATA 1203 Query 1191 TCCATAGAATAGGATCAAAGGGACTAAAACATTCTGTTTCGTCGCGTGTGATGTCTTTCA 1250 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1204 TCCATAGGATAGGATCAAAGGGACTAAAACATTATGTTTCGTCGCGTGTGATGTCTTTCA 1263 Query 1251 CCGATACCGAATTCGCAAACAAGCTCAACGCGAAACGAACCACTTCGACTCGTTCCACTG 1310 | ||||||||||| || ||||||||||| || |||||||||||||| ||||||||| ||| Sbjct 1264 CTGATACCGAATTTGCGAACAAGCTCAATGCAAAACGAACCACTTCAACTCGTTCCGCTG 1323 Query 1311 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCGACAGCCAATTTCTCACCTGGAAATCTAC 1370 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1324 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCAACAGCCAATTTCTCACCTGGAAATCTAC 1383 Query 1371 TCGGTGAAGGCTCAATCGGACGTGTTTACAGAGCCAAGTATTCCGATGGCCGCACATTAG 1430 | || |||||||||||||||||||||||||||||||| |||||||| || || || || | Sbjct 1384 TAGGGGAAGGCTCAATCGGACGTGTTTACAGAGCCAAATATTCCGACGGACGTACTTTGG 1443 Query 1431 CGGTTAAGAAGATCGATTCGACGCTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1490 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 1444 CGGTTAAGAAGATCGATTCAACGTTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1503 Query 1491 TTGTAATGAGCGTCTCGAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1550 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 TTGTAATGAGCCTCTCAAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1563 Query 1551 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1623 Query 1611 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTAACTTGGAACACAAGAGTCAGAATCG 1670 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1624 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTGACTTGGAACACAAGAGTCAGAATCG 1683 Query 1671 CCTTGGGAACCGCTCGAGCAGTCGAGTACCTGCATGAGGCATGTTCGCCGTCTGAGATGC 1730 ||||||||||||||||||| || ||||||||||| ||||||||||| || |||| ||||| Sbjct 1684 CCTTGGGAACCGCTCGAGCCGTTGAGTACCTGCACGAGGCATGTTCACCTTCTGTGATGC 1743 Query 1731 ATAAGAACATCAAGTCTTCTAACATTTTGCTAGACGCGGATCTCAACCCTCGTCTCTCAG 1790 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1744 ATAAGAATATCAAGTCTTCTAACATTTTGCTAGACGCAGATCTCAACCCTCGTCTCTCAG 1803 Query 1791 ATTATGGCCTCTCAAAATTCTATCTTAGAACGAGTCAAAACCTAGGGGAAGGATACAATG 1850 |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 1804 ATTACGGCCTCTCAAAATTCTACCTTAGAACGAGTCAAAATCTAGGAGAAGGATACAATG 1863 Query 1851 CACCAGAAGCCAAGAACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1910 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1864 CACCAGAAGCCAGGGACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1923 Query 1911 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1924 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1983 Query 1971 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATTGATGCATTGTCGAATA 2030 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1984 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATAGATGCATTGTCGAATA 2043 Query 2031 TAGCGGATCCAGCTTTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2090 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2044 TAGCGGATCCAGCTCTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2103 Query 2091 TTATCGCATTATGTGTACAGGTGGAACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGG 2150 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 2104 TTATCGCATTATGTGTTCAGGTGGAACCGGAGTTCCGACCACCGATGTCAGAAGTTGTGG 2163 Query 2151 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2164 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2223 Query 2211 CTTATCGAGCCCACGACGAATATGATTACTAGAGTAGTTATGGAGAAA-AGTAGTGACAA 2269 ||||||||||||||||||| ||||||||||||||| | | | ||||| |||||||||| Sbjct 2224 CTTATCGAGCCCACGACGATTATGATTACTAGAGT--TAA-GAAGAAAGAGTAGTGACAT 2280 Query 2270 TAT 2272 ||| Sbjct 2281 TAT 2283 > AT1G53730.2 | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061701-20065713 FORWARD LENGTH=2471 Length=2471 Score = 100 bits (54), Expect = 5e-20 Identities = 207/279 (74%), Gaps = 17/279 (6%) Strand=Plus/Plus Query 1886 AAGAGTGACGTCTACAGCTTTGGCGTCGTCATG-TTAGAGCTTCTCACCGGTCGAGTTCC 1944 ||||||||| | ||||| ||||| || || ||| || || ||| | || || || || Sbjct 1859 AAGAGTGACATTTACAGTTTTGGAGTAGTGATGCTT-GAACTTTTAACTGGGAGAAAACC 1917 Query 1945 ATTTGAC-GGAG-AGAA-GCCAAGGCCGGAG-AGATCGTTGGTACGGTGGGCGACACCAC 2000 ||||||| | || | || | |||| | ||| || || |||| || ||||||||||||| Sbjct 1918 ATTTGACAGCAGCACAAGGTCAAGATCTGAGCAG-TCACTGGTTCGATGGGCGACACCAC 1976 Query 2001 AACTTCACGACATTGATGCATT-GTCGAATATAGCGGATCCAGCT-TTGCACGGACTTTA 2058 ||||||||||||||||||| || | | || || | ||||||||| || | || ||||| Sbjct 1977 AACTTCACGACATTGATGCTTTAGCCAAA-ATGGTTGATCCAGCTCTTAAAGGG-CTTTA 2034 Query 2059 CCCAC-CAAAATCA-TTGTCAAGATTCGCCGACATTATCGCAT-TATGTGTACAGGTGGA 2115 || |||| || || || |||| || || ||||||| | | ||||| ||| ||| Sbjct 2035 TCCTGTCAAA-TCCCTT-TCTCGATTTGCAGATGTTATCGC-TCTCTGTGTCCAGCCGGA 2091 Query 2116 ACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGGAGGC 2154 || ||||| ||||||| ||||| ||||||||| |||| Sbjct 2092 GCCGGAGTTTAGACCACCAATGTCTGAAGTTGTGCAGGC 2130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117720278025 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5