BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477067
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78980.1 | Symbols: SRF5 | STRUBBELIG-receptor family 5 | ch... 3530 0.0
AT1G53730.2 | Symbols: SRF6 | STRUBBELIG-receptor family 6 | ch... 100 5e-20
> AT1G78980.1 | Symbols: SRF5 | STRUBBELIG-receptor family 5 |
chr1:29707687-29711421 REVERSE LENGTH=2491
Length=2491
Score = 3530 bits (1911), Expect = 0.0
Identities = 2163/2283 (95%), Gaps = 24/2283 (1%)
Strand=Plus/Plus
Query 1 CCAAACCTCAAAAATATCTCTATCCCTAAAT----T--CAAT--CACATTCTCTCAAACC 52
||||||||||| ||| ||||||||||||||| | |||| |||||| |||||||||
Sbjct 14 CCAAACCTCAACAATGTCTCTATCCCTAAATCCAATCACAATGGCACATTATCTCAAACC 73
Query 53 CGCGTCGTCTTGTCCGTGAAGCAAACCAGAAAGCATAACCCTAACCCTGAAAACCCTAAA 112
| |||||||||||||||||||||||||| |||||| ||| ||||| || |||||| |
Sbjct 74 CTCGTCGTCTTGTCCGTGAAGCAAACCAAAAAGCACAACACTAACTTTGGAAACCC---A 130
Query 113 TCCCTTTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTAAGCCTCT-TGAT 171
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 131 -----TTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTACGCCT-TGTGAT 184
Query 172 CGTCTCTCTGGCTATTATTGTCACTTTAGTTCAAGCAAAAACCGATAACCAAGAAGTCTC 231
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 CGTCTCTCTGGCTATTACTGTCACTTTACTTCAAGCAAAAACCGATAACCAAGAAGTCTC 244
Query 232 CGGGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCCAAACTCAAAGGCTGGAAACC 291
|| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 245 CGCGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCGAAACTCAAAGGTTGGAAAGC 304
Query 292 TAACGGAGGTGATCCCTGCGACGGTTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 351
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 305 TAACGGAGGTGATCCCTGCGAAGATTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 364
Query 352 CACCGAATTACAGTTATCCGGCTTTGAGCTAAGTGGATCTCTCGGTTATCTACTAAGCAA 411
||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 365 CACTGAATTACAGTTATCAGGCTTTGAGCTAGGTGGATCTCGCGGTTATCTACTAAGCAA 424
Query 412 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 484
Query 472 TCAACTCCCACCCAACATTGTCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 531
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCAACTCCCACCCAACATTGCCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 544
Query 532 GCCCTACTCGTTATCTCAAATGAAAAGTCTCCAAAGCATTAATCTTGGACAAAACAAGCT 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 545 GCCCTACTCGTTATCTCAAATGAAAAATCTCCAAAGCATTAATCTTGGACAAAACAAGCT 604
Query 592 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCAAAACTCGTAACTCTGGACTTATC 651
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 605 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCCAAACTCGAAACTCTGGACTTTTC 664
Query 652 GTTGAATCAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 711
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTTGAATAAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 724
Query 712 ACTACACTTGCAGGAAAATCGATTCACAGGCGACATAAACGTTCTGAGGAACCTTGCCAT 771
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 725 ACTACACTTGCAGGATAATCGATTCACAGGCGACATAAACGTTCTCAGGAACCTTGCCAT 784
Query 772 TGATGACTTGAACGTTGAAGACAACCAGTTTGAAGGATGGATCCCTAATGAGCTTAAGGA 831
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 CGATGACTTGAACGTCGAAGACAACCAGTTTGAAGGATGGATACCTAATGAGCTTAAGGA 844
Query 832 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCACCACCACCACC 891
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 845 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCTCCACCACCACC 904
Query 892 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCTAAAGATGGAGGAGGTGTAACCGC 951
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 905 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCGAAAGACGGAGGAGGTATAACCGC 964
Query 952 CGGGAAC-GGAATGATGATCGCTGGAGCATGTTTAGGAGTTCTTGTGTTGATCGCTGTTT 1010
| ||||| |||||| |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 965 C-GGAACTGGAATGGTGATCGCTGGAGCATGTTTAGGCGTTCTTGTGTTGATCATTGTTT 1023
Query 1011 TAATTGCGCTCGTGTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGACA 1070
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1024 TAATTGCGCTCGTTTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGATA 1083
Query 1071 ACAGTCATCACACTCCAAAGTTCAAATCTATTACCTCGCATGGATCAGCGCAAGAGCTTC 1130
||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 1084 ACAGTCATCACACCCCAAAGTTCAAATCTCTCACCTCGCATGGATCTGCGCAAGAGCTTC 1143
Query 1131 GTGTCGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGATGATGAAAATA 1190
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1144 GTGTTGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGGTGATGAAAATA 1203
Query 1191 TCCATAGAATAGGATCAAAGGGACTAAAACATTCTGTTTCGTCGCGTGTGATGTCTTTCA 1250
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1204 TCCATAGGATAGGATCAAAGGGACTAAAACATTATGTTTCGTCGCGTGTGATGTCTTTCA 1263
Query 1251 CCGATACCGAATTCGCAAACAAGCTCAACGCGAAACGAACCACTTCGACTCGTTCCACTG 1310
| ||||||||||| || ||||||||||| || |||||||||||||| ||||||||| |||
Sbjct 1264 CTGATACCGAATTTGCGAACAAGCTCAATGCAAAACGAACCACTTCAACTCGTTCCGCTG 1323
Query 1311 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCGACAGCCAATTTCTCACCTGGAAATCTAC 1370
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1324 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCAACAGCCAATTTCTCACCTGGAAATCTAC 1383
Query 1371 TCGGTGAAGGCTCAATCGGACGTGTTTACAGAGCCAAGTATTCCGATGGCCGCACATTAG 1430
| || |||||||||||||||||||||||||||||||| |||||||| || || || || |
Sbjct 1384 TAGGGGAAGGCTCAATCGGACGTGTTTACAGAGCCAAATATTCCGACGGACGTACTTTGG 1443
Query 1431 CGGTTAAGAAGATCGATTCGACGCTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1490
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1444 CGGTTAAGAAGATCGATTCAACGTTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1503
Query 1491 TTGTAATGAGCGTCTCGAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1550
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TTGTAATGAGCCTCTCAAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1563
Query 1551 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1623
Query 1611 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTAACTTGGAACACAAGAGTCAGAATCG 1670
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTGACTTGGAACACAAGAGTCAGAATCG 1683
Query 1671 CCTTGGGAACCGCTCGAGCAGTCGAGTACCTGCATGAGGCATGTTCGCCGTCTGAGATGC 1730
||||||||||||||||||| || ||||||||||| ||||||||||| || |||| |||||
Sbjct 1684 CCTTGGGAACCGCTCGAGCCGTTGAGTACCTGCACGAGGCATGTTCACCTTCTGTGATGC 1743
Query 1731 ATAAGAACATCAAGTCTTCTAACATTTTGCTAGACGCGGATCTCAACCCTCGTCTCTCAG 1790
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1744 ATAAGAATATCAAGTCTTCTAACATTTTGCTAGACGCAGATCTCAACCCTCGTCTCTCAG 1803
Query 1791 ATTATGGCCTCTCAAAATTCTATCTTAGAACGAGTCAAAACCTAGGGGAAGGATACAATG 1850
|||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1804 ATTACGGCCTCTCAAAATTCTACCTTAGAACGAGTCAAAATCTAGGAGAAGGATACAATG 1863
Query 1851 CACCAGAAGCCAAGAACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1910
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 CACCAGAAGCCAGGGACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1923
Query 1911 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1983
Query 1971 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATTGATGCATTGTCGAATA 2030
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1984 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATAGATGCATTGTCGAATA 2043
Query 2031 TAGCGGATCCAGCTTTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2090
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 TAGCGGATCCAGCTCTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2103
Query 2091 TTATCGCATTATGTGTACAGGTGGAACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGG 2150
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2104 TTATCGCATTATGTGTTCAGGTGGAACCGGAGTTCCGACCACCGATGTCAGAAGTTGTGG 2163
Query 2151 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2223
Query 2211 CTTATCGAGCCCACGACGAATATGATTACTAGAGTAGTTATGGAGAAA-AGTAGTGACAA 2269
||||||||||||||||||| ||||||||||||||| | | | ||||| ||||||||||
Sbjct 2224 CTTATCGAGCCCACGACGATTATGATTACTAGAGT--TAA-GAAGAAAGAGTAGTGACAT 2280
Query 2270 TAT 2272
|||
Sbjct 2281 TAT 2283
> AT1G53730.2 | Symbols: SRF6 | STRUBBELIG-receptor family 6 |
chr1:20061701-20065713 FORWARD LENGTH=2471
Length=2471
Score = 100 bits (54), Expect = 5e-20
Identities = 207/279 (74%), Gaps = 17/279 (6%)
Strand=Plus/Plus
Query 1886 AAGAGTGACGTCTACAGCTTTGGCGTCGTCATG-TTAGAGCTTCTCACCGGTCGAGTTCC 1944
||||||||| | ||||| ||||| || || ||| || || ||| | || || || ||
Sbjct 1859 AAGAGTGACATTTACAGTTTTGGAGTAGTGATGCTT-GAACTTTTAACTGGGAGAAAACC 1917
Query 1945 ATTTGAC-GGAG-AGAA-GCCAAGGCCGGAG-AGATCGTTGGTACGGTGGGCGACACCAC 2000
||||||| | || | || | |||| | ||| || || |||| || |||||||||||||
Sbjct 1918 ATTTGACAGCAGCACAAGGTCAAGATCTGAGCAG-TCACTGGTTCGATGGGCGACACCAC 1976
Query 2001 AACTTCACGACATTGATGCATT-GTCGAATATAGCGGATCCAGCT-TTGCACGGACTTTA 2058
||||||||||||||||||| || | | || || | ||||||||| || | || |||||
Sbjct 1977 AACTTCACGACATTGATGCTTTAGCCAAA-ATGGTTGATCCAGCTCTTAAAGGG-CTTTA 2034
Query 2059 CCCAC-CAAAATCA-TTGTCAAGATTCGCCGACATTATCGCAT-TATGTGTACAGGTGGA 2115
|| |||| || || || |||| || || ||||||| | | ||||| ||| |||
Sbjct 2035 TCCTGTCAAA-TCCCTT-TCTCGATTTGCAGATGTTATCGC-TCTCTGTGTCCAGCCGGA 2091
Query 2116 ACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGGAGGC 2154
|| ||||| ||||||| ||||| ||||||||| ||||
Sbjct 2092 GCCGGAGTTTAGACCACCAATGTCTGAAGTTGTGCAGGC 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117720278025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5